Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

26460929 .. 26462760

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1184400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGTTCTAAGGAACGAAAGAAAGCAGCTCTGTATCAGAAATTGCTGCAACTTCGTGCTGCCACCAATTCCAGTGATCTGAACAAAACTTCAATTATTGTTGATGCATCCAAATATATCAAGGAGTTGAAGTGCAAAGTGGACATGCTGAGCCAAGGCGTTGGAACTTCCCAGAATTCGATTGCCCGAAATCCATTACCCGCGGTAACAGTTCAAGCCCTGGAAAAGGGTTTCCAAATTCATGTGTTGTCGGAAAAGAAATGCCCGGGTTTGCTGGTCTCCATTCTCGAAGCCTTTGAGGAACTGGGCCTCGATGTGCTGGATGCTAGGGTTTCTTGTTCAGACACTTTCCAACTAGAAGCTGTTGGAGAAGGGGCTGATAGCATAGATGCTCAGGCGGTGGAACAAGCAGTCTTGCAAGCTATTCAAACTTGGAGCACAAGCAGTGAGCAAGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.6

Weight (kDa)

5.04

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	69 - 143	1.7e-23	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	3 cut(s)	201, 203, 398
AcsI	RAATTY	2 cut(s)	175, 237
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	93, 130, 215, 428
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	29, 362, 422
AluI	AGCT	3 cut(s)	29, 362, 422
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	26, 46, 59
ApoI	RAATTY	2 cut(s)	175, 237
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	266, 267
AvaI	CYCGRG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	33, 38, 46
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	266, 267
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	327, 356
BisI	GCNGC	3 cut(s)	27, 47, 60
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	3 cut(s)	28, 48, 61
Bme1390I	CCNGG	3 cut(s)	221, 266, 267
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	3 cut(s)	221, 266, 267
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	4 cut(s)	94, 116, 313, 379
BmuI	ACTGGG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	266, 267
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	154, 201, 219, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	72, 309
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	4 cut(s)	154, 201, 219, 265
BseGI	GGATG	2 cut(s)	107, 328
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	140, 407
BseNI	ACTGG	2 cut(s)	72, 309
BseXI	GCAGC	3 cut(s)	33, 38, 46
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	201, 203, 398
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	141, 406
BspFNI	CGCG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	72, 309
BssECI	CCNNGG	4 cut(s)	154, 201, 219, 265
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	9, 149, 393
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	107, 328
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	219, 264, 265
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	33, 38, 46
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	107, 328
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	79, 451
Cac8I	GCNNGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	307
Cfr42I	CCGCGG	1 cut(s)	204
Cfr9I	CCCGGG	1 cut(s)	265
CviAII	CATG	2 cut(s)	145, 242
CviJI	RGCY	8 cut(s)	29, 153, 218, 293, 309, 362, 377, 422
CviKI_1	RGCY	8 cut(s)	29, 153, 218, 293, 309, 362, 377, 422
DdeI	CTNAG	3 cut(s)	9, 149, 393
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	148, 245
FaiI	YATR	4 cut(s)	117, 146, 243, 386
FatI	CATG	2 cut(s)	144, 241
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	27, 47, 60
FokI	GGATG	2 cut(s)	94, 335
Fsp4HI	GCNGC	3 cut(s)	27, 47, 60
FspBI	CTAG	2 cut(s)	327, 356
GluI	GCNGC	3 cut(s)	27, 47, 60
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	148, 245
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	39, 81, 253, 343
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	49, 107, 135, 418
HpyF3I	CTNAG	3 cut(s)	9, 149, 393
Hsp92II	CATG	2 cut(s)	148, 245
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	9 cut(s)	85, 185, 206, 233, 260, 279, 290, 305, 380
Lsp1109I	GCAGC	3 cut(s)	33, 38, 46
LweI	GCATC	4 cut(s)	94, 116, 313, 379
MaeI	CTAG	2 cut(s)	327, 356
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	5 cut(s)	41, 67, 93, 175, 237
MmeI	TCCRAC	4 cut(s)	142, 231, 346, 376
MnlI	CCTC	2 cut(s)	292, 320
Mph1103I	ATGCAT	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	3 cut(s)	221, 266, 267
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	203
NciI	CCSGG	2 cut(s)	266, 267
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	148, 245
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	28, 48, 61
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	307
SacII	CCGCGG	1 cut(s)	204
SatI	GCNGC	3 cut(s)	27, 47, 60
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	221, 266, 267
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	3 cut(s)	31, 364, 424
SfaNI	GCATC	4 cut(s)	94, 116, 313, 379
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SmaI	CCCGGG	1 cut(s)	267
Sse9I	AATT	5 cut(s)	41, 67, 93, 175, 237
SsiI	CCGC	3 cut(s)	201, 203, 398
SspMI	CTAG	2 cut(s)	327, 356
StyD4I	CCNGG	3 cut(s)	219, 264, 265
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	3 cut(s)	179, 288, 312
TasI	AATT	5 cut(s)	41, 67, 93, 175, 237
TscAI	CASTG	2 cut(s)	79, 451
TseI	GCWGC	3 cut(s)	26, 46, 59
TspDTI	ATGAA	1 cut(s)	230
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	2 cut(s)	79, 451
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	2 cut(s)	175, 237
XceI	RCATGY	1 cut(s)	148
XmaI	CCCGGG	1 cut(s)	265
XspI	CTAG	2 cut(s)	327, 356
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.