pycom12g17320

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001433
Physical Location & Seq
Forward (+)
19657120 .. 19658429
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17320.2

Sequence Viewer

Length: 465 bp
ATGAGTTCTAAGGAACGAAAGAAAGCAGCTCTGTATCAGAAATTGCTGCAACTTCGTGCTGCCACCAATTCCAGTGATCTGAACAAAACTTCAATTATTGTTGATGCATCCAAATATATCAATGAGTTGAAGTGCAAAGTGGACATGCTGAGCCAAGGCGTTGGAACTTCCCAGAATTCGATTACCCGAAATCCATTACCCGCGCAGGTAACAGTTCAAACCCTGGAAAAGGGTTTCCAAATTCATGTGTTGTCGGAAAAGAAATGCCCGGGTTTGCTGGTCTCCATTCTCGAAGCCTTTGAGGAACTGGGCCTCGATGTGCTGGATGCTAGGGTTTCTTGTTCAGACACTTTCCAACTAGAAGCTGTTGGAGAAGGGGCTGATAGCATAGATGCTCAGGCGGTGGAACAAGCAGTCTTGCAAGCTATTCAAACTTGGAGCACAAGCAATGAGCAAGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.81

Weight (kDa)

4.89

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 401
AcsI RAATTY 2 cut(s) 175, 240
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 4 cut(s) 93, 130, 218, 431
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 29, 365, 425
AluI AGCT 3 cut(s) 29, 365, 425
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 26, 46, 59
ApoI RAATTY 2 cut(s) 175, 240
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 2 cut(s) 269, 270
AvaI CYCGRG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 33, 38, 46
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 269, 270
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 2 cut(s) 330, 359
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 3 cut(s) 27, 47, 60
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 3 cut(s) 28, 48, 61
Bme1390I CCNGG 3 cut(s) 224, 269, 270
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 3 cut(s) 224, 269, 270
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 4 cut(s) 94, 116, 316, 382
BmuI ACTGGG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 269, 270
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 154, 222, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 72, 312
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 154, 222, 268
BseGI GGATG 2 cut(s) 107, 331
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 2 cut(s) 140, 410
BseNI ACTGG 2 cut(s) 72, 312
BseXI GCAGC 3 cut(s) 33, 38, 46
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 286
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 2 cut(s) 201, 401
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 141, 409
BspFNI CGCG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 2 cut(s) 72, 312
BssECI CCNNGG 3 cut(s) 154, 222, 268
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 9, 149, 396
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 107, 331
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 222, 267, 268
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 33, 38, 46
BstXI CCANNNNNNTGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 107, 331
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 310
Cfr9I CCCGGG 1 cut(s) 268
CviAII CATG 2 cut(s) 145, 245
CviJI RGCY 7 cut(s) 29, 153, 296, 312, 365, 380, 425
CviKI_1 RGCY 7 cut(s) 29, 153, 296, 312, 365, 380, 425
DdeI CTNAG 3 cut(s) 9, 149, 396
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 148, 248
FaiI YATR 4 cut(s) 117, 146, 246, 389
FatI CATG 2 cut(s) 144, 244
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 27, 47, 60
FokI GGATG 2 cut(s) 94, 338
Fsp4HI GCNGC 3 cut(s) 27, 47, 60
FspBI CTAG 2 cut(s) 330, 359
GlaI GCGC 1 cut(s) 204
GluI GCNGC 3 cut(s) 27, 47, 60
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 148, 248
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 39, 81, 256, 346
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 49, 107, 135, 421
HpyF3I CTNAG 3 cut(s) 9, 149, 396
Hsp92II CATG 2 cut(s) 148, 248
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 438
Lsp1109I GCAGC 3 cut(s) 33, 38, 46
LweI GCATC 4 cut(s) 94, 116, 316, 382
MaeI CTAG 2 cut(s) 330, 359
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 5 cut(s) 41, 67, 93, 175, 240
MmeI TCCRAC 4 cut(s) 142, 234, 349, 379
MnlI CCTC 2 cut(s) 295, 323
Mph1103I ATGCAT 1 cut(s) 109
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 224, 269, 270
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 203
NciI CCSGG 2 cut(s) 269, 270
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 148, 248
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 148
PkrI GCNGC 3 cut(s) 28, 48, 61
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 310
SatI GCNGC 3 cut(s) 27, 47, 60
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 3 cut(s) 224, 269, 270
SduI GDGCHC 1 cut(s) 443
SetI ASST 4 cut(s) 31, 210, 367, 427
SfaNI GCATC 4 cut(s) 94, 116, 316, 382
SmaI CCCGGG 1 cut(s) 270
Sse9I AATT 5 cut(s) 41, 67, 93, 175, 240
SsiI CCGC 2 cut(s) 201, 401
SspMI CTAG 2 cut(s) 330, 359
StyD4I CCNGG 3 cut(s) 222, 267, 268
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 179, 291, 315
TasI AATT 5 cut(s) 41, 67, 93, 175, 240
TscAI CASTG 1 cut(s) 79
TseI GCWGC 3 cut(s) 26, 46, 59
TspDTI ATGAA 1 cut(s) 233
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 2 cut(s) 175, 240
XceI RCATGY 1 cut(s) 148
XmaI CCCGGG 1 cut(s) 268
XspI CTAG 2 cut(s) 330, 359
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.