Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Reverse (-)

39864289 .. 39865781

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAATTCTTCTAGGAAGCGAAAGAAAGCAGCTCTGTATGAACAACTTCGGGCTGCCACCAATTCCACTGCTATGAACAAAGCTTCAATTATAGTTGATGCATCCAAATACATCCAGGAGTTGAAGCAGAAAGTGGACACACTCAACCAAGACGTTGGAACTTCGCAAAATTCATCGTCACCTGCGGTTACTGTGGAAACCCTAGAAAGGGGTTTTCTTATTAGTGTCTTGTCAGAAAAGAACTGCCCAGGTTTGCTCGTTTCCATTCTAGAAGCCTTTGAAGACCTGGGCCTTGATGTGCTCGATGCTAGGGTTTCTTGTGCAGACAGTTTCCAACTGGAAGCGGTTGGAGGAGAAAACCAAGGAGAGGCTGATAGCATAGATGCACAGGTGGTGAAACAAGCGGTGTTGCAAGCTATTCAGAACTGGGAGCCAGAGCAACTAGCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.2

Weight (kDa)

4.6

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	63 - 141	7.5e-26	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	3 cut(s)	185, 344, 404
AcsI	RAATTY	2 cut(s)	4, 169
AfiI	CCNNNNNNNGG	3 cut(s)	207, 208, 367
AgsI	TTSAA	3 cut(s)	87, 124, 281
AjnI	CCWGG	3 cut(s)	114, 247, 285
AluBI	AGCT	4 cut(s)	32, 83, 416, 450
AluI	AGCT	4 cut(s)	32, 83, 416, 450
Alw21I	GWGCWC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	29, 53
ApoI	RAATTY	2 cut(s)	4, 169
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	171, 406
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	40, 41
BciT130I	CCWGG	3 cut(s)	116, 249, 287
BfaI	CTAG	6 cut(s)	12, 203, 269, 309, 443, 451
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	2 cut(s)	30, 54
BlsI	GCNGC	2 cut(s)	31, 55
Bme1390I	CCNGG	3 cut(s)	116, 249, 287
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	3 cut(s)	116, 249, 287
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	4 cut(s)	88, 110, 295, 373
BmuI	ACTGGG	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	247, 286, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 208, 367
Bse1I	ACTGG	2 cut(s)	342, 431
BseBI	CCWGG	3 cut(s)	116, 249, 287
BseDI	CCNNGG	3 cut(s)	247, 286, 361
BseGI	GGATG	2 cut(s)	101, 111
BseLI	CCNNNNNNNGG	3 cut(s)	207, 208, 367
BseNI	ACTGG	2 cut(s)	342, 431
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	40, 41
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	303
BslI	CCNNNNNNNGG	3 cut(s)	207, 208, 367
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	185, 344, 404
BspANI	GGCC	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	342, 431
BssECI	CCNNGG	3 cut(s)	247, 286, 361
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	116, 249, 287
Bst4CI	ACNGT	2 cut(s)	193, 329
BstC8I	GCNNGC	2 cut(s)	414, 448
BstF5I	GGATG	2 cut(s)	101, 111
BstNI	CCWGG	3 cut(s)	116, 249, 287
BstSCI	CCNGG	3 cut(s)	114, 247, 285
BstV1I	GCAGC	2 cut(s)	40, 41
BstV2I	GAAGAC	1 cut(s)	288
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	101, 111
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	414, 448
Cfr13I	GGNCC	1 cut(s)	289
CviJI	RGCY	9 cut(s)	32, 53, 83, 275, 291, 371, 416, 433, 450
CviKI_1	RGCY	9 cut(s)	32, 53, 83, 275, 291, 371, 416, 433, 450
Eco130I	CCWWGG	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	114, 247, 285
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	361
FaiI	YATR	4 cut(s)	39, 74, 92, 380
Fnu4HI	GCNGC	2 cut(s)	30, 54
FokI	GGATG	2 cut(s)	88, 98
Fsp4HI	GCNGC	2 cut(s)	30, 54
FspBI	CTAG	6 cut(s)	12, 203, 269, 309, 443, 451
GluI	GCNGC	2 cut(s)	30, 54
HaeIII	GGCC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	81
HphI	GGTGA	2 cut(s)	171, 406
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	235, 423
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	193, 329
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	101, 323, 386, 412
HpySE526I	ACGT	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	40, 41
LweI	GCATC	4 cut(s)	88, 110, 295, 373
MaeI	CTAG	6 cut(s)	12, 203, 269, 309, 443, 451
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	177, 187
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	4, 61, 87, 169
MmeI	TCCRAC	3 cut(s)	136, 328, 358
MnlI	CCTC	2 cut(s)	344, 361
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	116, 249, 287
MvaI	CCWGG	3 cut(s)	116, 249, 287
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	31, 55
Psp6I	CCWGG	3 cut(s)	114, 247, 285
PspGI	CCWGG	3 cut(s)	114, 247, 285
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	2 cut(s)	30, 54
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	116, 249, 287
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	9 cut(s)	34, 85, 156, 184, 253, 288, 393, 418, 452
SfaNI	GCATC	4 cut(s)	88, 110, 295, 373
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	4, 61, 87, 169
SsiI	CCGC	3 cut(s)	185, 344, 404
SspMI	CTAG	6 cut(s)	12, 203, 269, 309, 443, 451
StyD4I	CCNGG	3 cut(s)	114, 247, 285
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	193, 329
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	4, 61, 87, 169
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	29, 53
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	17, 54, 89, 162
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	4, 169
XbaI	TCTAGA	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	6 cut(s)	12, 203, 269, 309, 443, 451
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.