Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

9125376 .. 9127282

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAATTCTTCTAGGAAGCGAAAGAAAGCAGCCCTGTATGAACAACTTCGGGCTGCCACCAATTCCACTGCTATGAACAAAGCTTCAATTATAGTTGATGCATCCAAATACATCCAGGAGTTGAAGCAGAAAGTGGACACGCTCAACCAAGACGTTGGAACTTCGCAAAATTCATCGTCACCTGCGCAGGTTACTGTGGAAACCCTAGAAAGGGGTTTTCTTATTAGTGTCTTGTCAGAAAAGAACTGCCCAGGTTTGCTCGTTTCCATTCTAGAAGCCTTTGAAGACCTGGGCCTTGATGTGCTCGATGCTAGGGTTTCTTGTGCAGACAGTTTCCAACTGGAAGCGGTTGGAGGAGAAGTAAGAAATCAATACGCTAGTCAGTTTTTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

5.16

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	63 - 122	2.6e-19	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	2 cut(s)	178, 190
AciI	CCGC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	4, 169
AfiI	CCNNNNNNNGG	2 cut(s)	210, 211
AgsI	TTSAA	3 cut(s)	87, 124, 284
AjnI	CCWGG	3 cut(s)	114, 250, 288
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	29, 53
ApoI	RAATTY	2 cut(s)	4, 169
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	40, 41
BciT130I	CCWGG	3 cut(s)	116, 252, 290
BfaI	CTAG	5 cut(s)	12, 206, 272, 312, 378
BfuAI	ACCTGC	2 cut(s)	178, 190
BisI	GCNGC	2 cut(s)	30, 54
BlsI	GCNGC	2 cut(s)	31, 55
Bme1390I	CCNGG	3 cut(s)	116, 252, 290
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	116, 252, 290
BmsI	GCATC	3 cut(s)	88, 110, 298
BpiI	GAAGAC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	250, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 211
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	116, 252, 290
BseDI	CCNNGG	2 cut(s)	250, 289
BseGI	GGATG	2 cut(s)	101, 111
BseLI	CCNNNNNNNGG	2 cut(s)	210, 211
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	40, 41
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	210, 211
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	178, 190
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	250, 289
Bst2UI	CCWGG	3 cut(s)	116, 252, 290
Bst4CI	ACNGT	2 cut(s)	196, 332
BstF5I	GGATG	2 cut(s)	101, 111
BstHHI	GCGC	1 cut(s)	187
BstNI	CCWGG	3 cut(s)	116, 252, 290
BstSCI	CCNGG	3 cut(s)	114, 250, 288
BstV1I	GCAGC	2 cut(s)	40, 41
BstV2I	GAAGAC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	101, 111
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	178, 190
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	292
CviJI	RGCY	5 cut(s)	32, 53, 83, 278, 294
CviKI_1	RGCY	5 cut(s)	32, 53, 83, 278, 294
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	114, 250, 288
EcoT22I	ATGCAT	1 cut(s)	103
FaiI	YATR	4 cut(s)	39, 74, 92, 391
Fnu4HI	GCNGC	2 cut(s)	30, 54
FokI	GGATG	2 cut(s)	88, 98
Fsp4HI	GCNGC	2 cut(s)	30, 54
FspBI	CTAG	5 cut(s)	12, 206, 272, 312, 378
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	30, 54
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	81
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	196, 332
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	101, 326
HpySE526I	ACGT	1 cut(s)	153
HspAI	GCGC	1 cut(s)	185
Lsp1109I	GCAGC	2 cut(s)	40, 41
LweI	GCATC	3 cut(s)	88, 110, 298
MaeI	CTAG	5 cut(s)	12, 206, 272, 312, 378
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	177, 190
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	4 cut(s)	4, 61, 87, 169
MmeI	TCCRAC	3 cut(s)	136, 331, 361
MnlI	CCTC	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	116, 252, 290
MvaI	CCWGG	3 cut(s)	116, 252, 290
NmuCI	GTSAC	1 cut(s)	177
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	31, 55
Psp6I	CCWGG	3 cut(s)	114, 250, 288
PspGI	CCWGG	3 cut(s)	114, 250, 288
PspPI	GGNCC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	2 cut(s)	30, 54
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	3 cut(s)	116, 252, 290
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	6 cut(s)	85, 156, 184, 192, 256, 291
SfaNI	GCATC	3 cut(s)	88, 110, 298
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	4, 61, 87, 169
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	5 cut(s)	12, 206, 272, 312, 378
StyD4I	CCNGG	3 cut(s)	114, 250, 288
TaaI	ACNGT	2 cut(s)	196, 332
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	306
TasI	AATT	4 cut(s)	4, 61, 87, 169
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	29, 53
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	17, 54, 89, 162
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	4, 169
XbaI	TCTAGA	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	5 cut(s)	12, 206, 272, 312, 378
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.