Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| bHLH-TF_ACT-like_plant | PF22754 | 39 - 98 | 1.7e-19 | Plant bHLH transcription factor, ACT-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 118 |
| Acc16I | TGCGCA | 1 cut(s) | 114 |
| Acc36I | ACCTGC | 2 cut(s) | 106, 118 |
| AciI | CCGC | 1 cut(s) | 275 |
| AcsI | RAATTY | 1 cut(s) | 97 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 138, 139 |
| AgsI | TTSAA | 3 cut(s) | 15, 52, 212 |
| AjnI | CCWGG | 3 cut(s) | 42, 178, 216 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApoI | RAATTY | 1 cut(s) | 97 |
| AspLEI | GCGC | 1 cut(s) | 115 |
| AspS9I | GGNCC | 1 cut(s) | 220 |
| AsuHPI | GGTGA | 1 cut(s) | 99 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BciT130I | CCWGG | 3 cut(s) | 44, 180, 218 |
| BfaI | CTAG | 3 cut(s) | 134, 200, 240 |
| BfuAI | ACCTGC | 2 cut(s) | 106, 118 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 180, 218 |
| BmgT120I | GGNCC | 1 cut(s) | 220 |
| BmrFI | CCNGG | 3 cut(s) | 44, 180, 218 |
| BmsI | GCATC | 3 cut(s) | 16, 38, 226 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 2 cut(s) | 178, 217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 273, 303 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 138, 139 |
| Bse1I | ACTGG | 1 cut(s) | 273 |
| BseBI | CCWGG | 3 cut(s) | 44, 180, 218 |
| BseDI | CCNNGG | 2 cut(s) | 178, 217 |
| BseGI | GGATG | 2 cut(s) | 29, 39 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 138, 139 |
| BseNI | ACTGG | 1 cut(s) | 273 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BsgI | GTGCAG | 1 cut(s) | 273 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 138, 139 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 1 cut(s) | 234 |
| BspACI | CCGC | 1 cut(s) | 275 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspMI | ACCTGC | 2 cut(s) | 106, 118 |
| BsrI | ACTGG | 1 cut(s) | 273 |
| BssECI | CCNNGG | 2 cut(s) | 178, 217 |
| Bst2UI | CCWGG | 3 cut(s) | 44, 180, 218 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 260 |
| BstF5I | GGATG | 2 cut(s) | 29, 39 |
| BstHHI | GCGC | 1 cut(s) | 115 |
| BstNI | CCWGG | 3 cut(s) | 44, 180, 218 |
| BstSCI | CCNGG | 3 cut(s) | 42, 178, 216 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 83 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtsCI | GGATG | 2 cut(s) | 29, 39 |
| BveI | ACCTGC | 2 cut(s) | 106, 118 |
| CfoI | GCGC | 1 cut(s) | 115 |
| Cfr13I | GGNCC | 1 cut(s) | 220 |
| CviJI | RGCY | 3 cut(s) | 11, 206, 222 |
| CviKI_1 | RGCY | 3 cut(s) | 11, 206, 222 |
| EcoRII | CCWGG | 3 cut(s) | 42, 178, 216 |
| EcoT22I | ATGCAT | 1 cut(s) | 31 |
| FaiI | YATR | 2 cut(s) | 20, 319 |
| FokI | GGATG | 2 cut(s) | 16, 26 |
| FspBI | CTAG | 3 cut(s) | 134, 200, 240 |
| FspI | TGCGCA | 1 cut(s) | 114 |
| GlaI | GCGC | 1 cut(s) | 114 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HhaI | GCGC | 1 cut(s) | 115 |
| Hin6I | GCGC | 1 cut(s) | 113 |
| HinP1I | GCGC | 1 cut(s) | 113 |
| HindIII | AAGCTT | 1 cut(s) | 9 |
| HphI | GGTGA | 1 cut(s) | 99 |
| Hpy166II | GTNNAC | 1 cut(s) | 64 |
| Hpy188I | TCNGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 1 cut(s) | 64 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 260 |
| HpyCH4IV | ACGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 254 |
| HpySE526I | ACGT | 1 cut(s) | 81 |
| HspAI | GCGC | 1 cut(s) | 113 |
| LpnPI | CCDG | 9 cut(s) | 29, 56, 101, 123, 165, 192, 203, 230, 254 |
| LweI | GCATC | 3 cut(s) | 16, 38, 226 |
| MaeI | CTAG | 3 cut(s) | 134, 200, 240 |
| MaeII | ACGT | 1 cut(s) | 81 |
| MaeIII | GTNAC | 2 cut(s) | 105, 118 |
| MboII | GAAGA | 1 cut(s) | 224 |
| MhlI | GDGCHC | 1 cut(s) | 234 |
| MluCI | AATT | 2 cut(s) | 15, 97 |
| MmeI | TCCRAC | 3 cut(s) | 64, 259, 289 |
| MnlI | CCTC | 1 cut(s) | 275 |
| Mph1103I | ATGCAT | 1 cut(s) | 31 |
| MspR9I | CCNGG | 3 cut(s) | 44, 180, 218 |
| MvaI | CCWGG | 3 cut(s) | 44, 180, 218 |
| NmuCI | GTSAC | 1 cut(s) | 105 |
| NsbI | TGCGCA | 1 cut(s) | 114 |
| NsiI | ATGCAT | 1 cut(s) | 31 |
| PaqCI | CACCTGC | 1 cut(s) | 118 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| Psp6I | CCWGG | 3 cut(s) | 42, 178, 216 |
| PspGI | CCWGG | 3 cut(s) | 42, 178, 216 |
| PspPI | GGNCC | 1 cut(s) | 220 |
| Sau96I | GGNCC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 3 cut(s) | 44, 180, 218 |
| SduI | GDGCHC | 1 cut(s) | 234 |
| SetI | ASST | 6 cut(s) | 13, 84, 112, 120, 184, 219 |
| SfaNI | GCATC | 3 cut(s) | 16, 38, 226 |
| Sse9I | AATT | 2 cut(s) | 15, 97 |
| SsiI | CCGC | 1 cut(s) | 275 |
| SspMI | CTAG | 3 cut(s) | 134, 200, 240 |
| StyD4I | CCNGG | 3 cut(s) | 42, 178, 216 |
| TaaI | ACNGT | 2 cut(s) | 124, 260 |
| TaiI | ACGT | 1 cut(s) | 84 |
| TaqI | TCGA | 1 cut(s) | 234 |
| TasI | AATT | 2 cut(s) | 15, 97 |
| TseFI | GTSAC | 1 cut(s) | 105 |
| Tsp45I | GTSAC | 1 cut(s) | 105 |
| TspDTI | ATGAA | 2 cut(s) | 17, 90 |
| XapI | RAATTY | 1 cut(s) | 97 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XspI | CTAG | 3 cut(s) | 134, 200, 240 |
| Zsp2I | ATGCAT | 1 cut(s) | 31 |