Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

26995898 .. 26997990

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTTCTAGGGAGCACAAGAGGGCAGCACTTTATGAGAAGCTGCAGCTTCTTCGTTCTATTACTAATTCTCATGCTCTAAACAAAACCTCAATCATAGTAGACGCATCAAAGTACATTGAAGAGCTAAAACAAAAGGTGGAAAGACTGAATGAAGATGCTGCAAATGCGCAAACTAGTTCATCATCAAGTGACCAAACTCCATTGCCTGTGCAGGTTACAGTGGAAACCCTAGAAAAGGGGTTTCTGATAAATGTGTTTTCTGAAAAGAGCTGCCCAGGTTTGCTTGTCTCTGTACTGGAAGCTTTCGAGGACTTGGGTCTTAATGTGCTTGAAGCTAGGGTTTCCTGTGCAGACAGTTTCCGGTTGCAGGCAGTTGGAGGAGAAAATGAGGAAGAAGGTGAAAGCATTGATGCTCATGCAGTGAAGCAAGCAGTGGCAGTGGCTATTAAAAACTGGAGTGAAAACAACGAACACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.6

Weight (kDa)

4.91

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	116, 297
AfiI	CCNNNNNNNGG	2 cut(s)	238, 370
AgsI	TTSAA	2 cut(s)	122, 335
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	6 cut(s)	43, 49, 127, 273, 305, 338
AluI	AGCT	6 cut(s)	43, 49, 127, 273, 305, 338
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	295
ApeKI	GCWGC	5 cut(s)	26, 43, 46, 161, 273
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	413
BauI	CACGAG	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	30, 38, 58, 148, 260
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	4 cut(s)	9, 177, 233, 339
BfmI	CTRYAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	5 cut(s)	27, 44, 47, 162, 274
BlsI	GCNGC	5 cut(s)	28, 45, 48, 163, 275
Bme1390I	CCNGG	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	116, 148, 403
BoxI	GACNNNNGTC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 370
Bse1I	ACTGG	2 cut(s)	303, 461
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	238, 370
BseMI	GCAATG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	303, 461
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	5 cut(s)	30, 38, 58, 148, 260
BsgI	GTGCAG	2 cut(s)	233, 372
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	238, 370
BsmAI	GTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	303, 461
BssECI	CCNNGG	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	223, 359
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	372, 432
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	279
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	5 cut(s)	30, 38, 58, 148, 260
BtsI	GCAGTG	3 cut(s)	429, 441, 447
BtsIMutI	CAGTG	4 cut(s)	228, 429, 441, 447
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	372, 432
CfoI	GCGC	1 cut(s)	172
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	115, 296
CviAII	CATG	2 cut(s)	74, 419
CviJI	RGCY	7 cut(s)	43, 49, 127, 273, 305, 338, 446
CviKI_1	RGCY	7 cut(s)	43, 49, 127, 273, 305, 338, 446
CviQI	GTAC	2 cut(s)	115, 296
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	77, 422
FaiI	YATR	4 cut(s)	36, 75, 98, 420
FatI	CATG	2 cut(s)	73, 418
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	27, 44, 47, 162, 274
Fsp4HI	GCNGC	5 cut(s)	27, 44, 47, 162, 274
FspBI	CTAG	4 cut(s)	9, 177, 233, 339
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	5 cut(s)	27, 44, 47, 162, 274
GsuI	CTGGAG	1 cut(s)	478
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	77, 422
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	303
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	249, 265
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	223, 359
HpyCH4V	TGCA	6 cut(s)	46, 164, 214, 353, 370, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	77, 422
HspAI	GCGC	1 cut(s)	170
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	200, 222, 264, 284, 291, 356, 361, 377, 442
Lsp1109I	GCAGC	5 cut(s)	30, 38, 58, 148, 260
LweI	GCATC	3 cut(s)	116, 148, 403
MaeI	CTAG	4 cut(s)	9, 177, 233, 339
MaeIII	GTNAC	2 cut(s)	191, 217
MboII	GAAGA	4 cut(s)	44, 134, 167, 407
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	5 cut(s)	15, 100, 304, 374, 385
MseI	TTAA	2 cut(s)	324, 450
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	77, 422
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	28, 45, 48, 163, 275
PshAI	GACNNNNGTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	48
RsaI	GTAC	2 cut(s)	116, 297
RsaNI	GTAC	2 cut(s)	115, 296
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	324, 450
SatI	GCNGC	5 cut(s)	27, 44, 47, 162, 274
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	116, 148, 403
SfcI	CTRYAG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	4 cut(s)	9, 177, 233, 339
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	223, 359
TaqI	TCGA	1 cut(s)	309
TasI	AATT	1 cut(s)	67
TatI	WGTACW	2 cut(s)	114, 295
Tru1I	TTAA	2 cut(s)	324, 450
Tru9I	TTAA	2 cut(s)	324, 450
TscAI	CASTG	4 cut(s)	228, 429, 441, 447
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	5 cut(s)	26, 43, 46, 161, 273
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	168, 171
TspRI	CASTG	4 cut(s)	228, 429, 441, 447
XagI	CCTNNNNNAGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	4 cut(s)	9, 177, 233, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.