Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

3885953 .. 3889703

Gene Structure 3751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0049800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGATGATGATCTTGGTCTTGGCTACCATCTCTGGTTCTCCCGACAGTACAACGAGTTATGGGAAATCATAAGGTTGAAGTATCGCATTGAGCTTTTGAAAAACTTACAGCGGGAACATAAGAAGACGGAAATTGAGTTTCATAAAGCGAGGGCTGAATTGAAAGAACAATACAAAGGGTTTTTTAAAAACCTCCAAGGGGAAGGAAAGACTGAATTTTGGCTTTCTAAATTGAAGAACAATGAAATACTTGCTAAGAAGATTACACAACTGGATGAAGGGGCCTTCCAGCATTTAAAAAATATTCGTTGTAGAAAGATTCCTAATGGATTCAAGCTGGAGTTCTTATTTGATTCTAATCCTTATTTTAAAGATTCTAAGCTCACGAAAACATTTCGCACAACTTCTGGCAACATGCCTAAAGTCACAGAGGCAACGGGGATGGAGATCGAGTGGCATCCTGGGAAAAGCTTGACTGAAACAGAAAATGGTGACAGCTTCTTCAACTTCTTTAAGTCCCCTGTTGCCGACACTGATGAAAAAGTCCAAAGACTTATGGAGCAGGACTATTGCATTGGTTCAACAATTCGGGACAAAATCATCAACAATAAGGATTTGGAGGACTTGCAGTTCTTTAGTCCTGTTAGCTACATTGTATACAAGCATCGTATGCTGAGATTGAAGTATTCCGAGTCTAGAAAAAATCTGGAAGCAAAGTACTTGAAACTTTATAAACCTTTATACGCGAAGAGATATCAGATTGTTAACGATATATGTAAAGTTGAAGTGAAAGCTAAAGCTGCAATGGACCAAGGAGATAAAGCCACCAAAGTGAAGGAAATCCCTAACTTTTGGCTTTCTGCAATGAAGAATCATAAATTACTTGCTCAGGAGATCACAGAGCGCGATGAAGAGGCACTTAAGTATCTGAAAGATATCAAGTGGTTTAAGATAGATGGAGGATGTTTCAAGTTGGAGTTCGTTTTTCAGCAGCCTAATCCTTATTTTGAAAATGATGTGCTGACCAAATCATATCAGGAGAAAACAACTGGGTGTGTCATCAAATGGCATCATGGAAAAGACTTGACACATAAACTTCTGGAGGGAATGTCGAAGAATTCCGAGCGCATGATCAAATCTTGTGAAAGCTTCTTCAACTTCTTTAACCCTCCCAAGTTCCGTCCTCACGATGATGTTCATGATTATGATGAACATCCCGATTATTATGATGAATATATTGATTGTCATGATGAATATCTAGTTGAGGAAGTCAAAAGTAGACTGAATTACGACTACTATATCGGTAAAATATTTCGAGACAAAATAATTCCTCATGCAGTATCTTGGTTCACACGCGAGGCTCTTGAAGAAGGAGGTGAGTTTGAAGACTTGCAAGATGAGGATGATGAGGATGTGGAGTTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

56.78

Weight (kDa)

6.08

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	70 - 202	1e-29	Nucleosome assembly protein (NAP)
NAP	PF00956	219 - 453	1e-56	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AccI	GTMKAC	2 cut(s)	657, 1279
AccII	CGCG	3 cut(s)	746, 906, 1356
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	215, 1117
AfaI	GTAC	2 cut(s)	50, 719
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	920
AjnI	CCWGG	1 cut(s)	460
AleI	CACNNNNGTG	1 cut(s)	830
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	9 cut(s)	94, 337, 382, 471, 498, 648, 794, 800, 1149
AluI	AGCT	9 cut(s)	94, 337, 382, 471, 498, 648, 794, 800, 1149
Alw26I	GTCTC	1 cut(s)	1311
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	800, 991
ApoI	RAATTY	2 cut(s)	215, 1117
AspLEI	GCGC	2 cut(s)	906, 1128
AspS9I	GGNCC	2 cut(s)	282, 808
AsuHPI	GGTGA	2 cut(s)	503, 1388
AvaII	GGWCC	1 cut(s)	808
BaeI	ACNNNNGTAYC	2 cut(s)	908, 941
BbsI	GAAGAC	2 cut(s)	131, 1392
BbvI	GCAGC	2 cut(s)	787, 1003
BccI	CCATC	3 cut(s)	36, 436, 950
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	1131
BcoDI	GTCTC	1 cut(s)	1311
BfaI	CTAG	3 cut(s)	696, 1259, 1426
BfrI	CTTAAG	1 cut(s)	920
BisI	GCNGC	2 cut(s)	801, 992
BlsI	GCNGC	2 cut(s)	802, 993
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	282, 808
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	1059
BmsI	GCATC	3 cut(s)	466, 673, 1078
BmuI	ACTGGG	1 cut(s)	1059
BpiI	GAAGAC	2 cut(s)	131, 1392
BpmI	CTGGAG	2 cut(s)	359, 1121
Bpu10I	CCTNAGC	1 cut(s)	888
BsaBI	GATNNNNATC	5 cut(s)	9, 357, 446, 1212, 1254
BsaJI	CCNNGG	3 cut(s)	196, 461, 811
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 1094, 1124
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	276, 1054
Bse3DI	GCAATG	2 cut(s)	810, 870
Bse8I	GATNNNNATC	5 cut(s)	9, 357, 446, 1212, 1254
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	196, 461, 811
BseGI	GGATG	8 cut(s)	10, 280, 447, 457, 968, 1213, 1408, 1417
BseJI	GATNNNNATC	5 cut(s)	9, 357, 446, 1212, 1254
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	2 cut(s)	810, 870
BseMII	CTCAG	2 cut(s)	665, 902
BseNI	ACTGG	2 cut(s)	276, 1054
BseXI	GCAGC	2 cut(s)	787, 1003
Bsh1236I	CGCG	3 cut(s)	746, 906, 1356
BshFI	GGCC	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	502, 605
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	1311
BsmFI	GGGAC	2 cut(s)	502, 605
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	4 cut(s)	10, 447, 894, 1131
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	666, 901
BspFNI	CGCG	3 cut(s)	746, 906, 1356
BspHI	TCATGA	2 cut(s)	1198, 1246
BspLI	GGNNCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	810, 870
BsrI	ACTGG	2 cut(s)	276, 1054
BssECI	CCNNGG	3 cut(s)	196, 461, 811
BssMI	GATC	4 cut(s)	10, 447, 894, 1131
BssNAI	GTATAC	1 cut(s)	658
BssT1I	CCWWGG	2 cut(s)	196, 811
Bst1107I	GTATAC	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	743, 906
BstAFI	CTTAAG	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstDEI	CTNAG	4 cut(s)	255, 378, 674, 888
BstF5I	GGATG	8 cut(s)	10, 280, 447, 457, 968, 1213, 1408, 1417
BstFNI	CGCG	3 cut(s)	746, 906, 1356
BstHHI	GCGC	2 cut(s)	906, 1128
BstKTI	GATC	4 cut(s)	13, 450, 897, 1134
BstMAI	GTCTC	1 cut(s)	1311
BstMBI	GATC	4 cut(s)	10, 447, 894, 1131
BstMWI	GCNNNNNNNGC	2 cut(s)	670, 800
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	3 cut(s)	746, 906, 1356
BstV1I	GCAGC	2 cut(s)	787, 1003
BstV2I	GAAGAC	2 cut(s)	131, 1392
BstZ17I	GTATAC	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	8 cut(s)	10, 280, 447, 457, 968, 1213, 1408, 1417
BtsIMutI	CAGTG	1 cut(s)	531
CciI	TCATGA	2 cut(s)	1198, 1246
CfoI	GCGC	2 cut(s)	906, 1128
Cfr13I	GGNCC	2 cut(s)	282, 808
Csp6I	GTAC	2 cut(s)	49, 718
CviAII	CATG	6 cut(s)	415, 1073, 1129, 1199, 1247, 1334
CviQI	GTAC	2 cut(s)	49, 718
DdeI	CTNAG	4 cut(s)	255, 378, 674, 888
DpnI	GATC	4 cut(s)	12, 449, 896, 1133
DpnII	GATC	4 cut(s)	10, 447, 894, 1131
DraI	TTTAAA	3 cut(s)	187, 297, 370
Eam1104I	CTCTTC	2 cut(s)	743, 906
EarI	CTCTTC	2 cut(s)	743, 906
Eco130I	CCWWGG	2 cut(s)	196, 811
Eco32I	GATATC	2 cut(s)	755, 937
Eco47I	GGWCC	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	1117
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	2 cut(s)	755, 937
EcoT14I	CCWWGG	2 cut(s)	196, 811
ErhI	CCWWGG	2 cut(s)	196, 811
FaeI	CATG	6 cut(s)	418, 1076, 1132, 1202, 1250, 1337
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	2 cut(s)	502, 605
FatI	CATG	6 cut(s)	414, 1072, 1128, 1198, 1246, 1333
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	1131
FblI	GTMKAC	2 cut(s)	657, 1279
Fnu4HI	GCNGC	2 cut(s)	801, 992
FokI	GGATG	8 cut(s)	17, 287, 444, 454, 975, 1200, 1415, 1424
Fsp4HI	GCNGC	2 cut(s)	801, 992
FspBI	CTAG	3 cut(s)	696, 1259, 1426
GlaI	GCGC	2 cut(s)	905, 1127
GluI	GCNGC	2 cut(s)	801, 992
GsuI	CTGGAG	2 cut(s)	359, 1121
HaeIII	GGCC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	906, 1128
Hin1II	CATG	6 cut(s)	418, 1076, 1132, 1202, 1250, 1337
Hin6I	GCGC	2 cut(s)	904, 1126
HinP1I	GCGC	2 cut(s)	904, 1126
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	2 cut(s)	469, 1147
HinfI	GANTC	6 cut(s)	319, 330, 353, 374, 692, 871
HpaI	GTTAAC	1 cut(s)	766
HphI	GGTGA	2 cut(s)	503, 1388
Hpy166II	GTNNAC	4 cut(s)	658, 766, 1280, 1350
Hpy188I	TCNGA	4 cut(s)	691, 759, 930, 1123
Hpy8I	GTNNAC	4 cut(s)	658, 766, 1280, 1350
HpyAV	CCTTC	5 cut(s)	197, 272, 295, 829, 1364
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	6 cut(s)	573, 628, 803, 863, 1337, 1393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	670, 800
HpyF3I	CTNAG	4 cut(s)	255, 378, 674, 888
Hsp92II	CATG	6 cut(s)	418, 1076, 1132, 1202, 1250, 1337
HspAI	GCGC	2 cut(s)	904, 1126
Ksp22I	TGATCA	1 cut(s)	1131
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	10, 447, 894, 1131
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	787, 1003
LweI	GCATC	3 cut(s)	466, 673, 1078
MaeI	CTAG	3 cut(s)	696, 1259, 1426
MaeIII	GTNAC	2 cut(s)	424, 491
MalI	GATC	4 cut(s)	12, 449, 896, 1133
MboI	GATC	4 cut(s)	10, 447, 894, 1131
MluCI	AATT	9 cut(s)	132, 158, 215, 230, 585, 878, 1117, 1285, 1326
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	1 cut(s)	954
MseI	TTAA	8 cut(s)	186, 296, 369, 513, 765, 921, 948, 1164
MslI	CAYNNNNRTG	3 cut(s)	830, 1191, 1203
MspA1I	CMGCKG	1 cut(s)	112
MspCI	CTTAAG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	3 cut(s)	746, 906, 1356
MwoI	GCNNNNNNNGC	2 cut(s)	670, 800
NdeII	GATC	4 cut(s)	10, 447, 894, 1131
NlaIII	CATG	6 cut(s)	418, 1076, 1132, 1202, 1250, 1337
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	424, 491
NspI	RCATGY	1 cut(s)	418
OliI	CACNNNNGTG	1 cut(s)	830
PagI	TCATGA	2 cut(s)	1198, 1246
PfeI	GAWTC	5 cut(s)	319, 330, 353, 374, 871
PkrI	GCNGC	2 cut(s)	802, 993
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	282, 808
RsaI	GTAC	2 cut(s)	50, 719
RsaNI	GTAC	2 cut(s)	49, 718
RseI	CAYNNNNRTG	3 cut(s)	830, 1191, 1203
SaqAI	TTAA	8 cut(s)	186, 296, 369, 513, 765, 921, 948, 1164
SatI	GCNGC	2 cut(s)	801, 992
Sau3AI	GATC	4 cut(s)	10, 447, 894, 1131
Sau96I	GGNCC	2 cut(s)	282, 808
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	466, 673, 1078
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	3 cut(s)	830, 1191, 1203
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	9 cut(s)	132, 158, 215, 230, 585, 878, 1117, 1285, 1326
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	2 cut(s)	304, 1311
SspMI	CTAG	3 cut(s)	696, 1259, 1426
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	196, 811
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	450, 1112, 1315
TasI	AATT	9 cut(s)	132, 158, 215, 230, 585, 878, 1117, 1285, 1326
TatI	WGTACW	2 cut(s)	48, 717
TfiI	GAWTC	5 cut(s)	319, 330, 353, 374, 871
Tru1I	TTAA	8 cut(s)	186, 296, 369, 513, 765, 921, 948, 1164
Tru9I	TTAA	8 cut(s)	186, 296, 369, 513, 765, 921, 948, 1164
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	424, 491
TseI	GCWGC	2 cut(s)	800, 991
Tsp45I	GTSAC	2 cut(s)	424, 491
TspGWI	ACGGA	2 cut(s)	143, 1169
TspRI	CASTG	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	2 cut(s)	215, 1117
XbaI	TCTAGA	1 cut(s)	695
XceI	RCATGY	1 cut(s)	418
XmiI	GTMKAC	2 cut(s)	657, 1279
XspI	CTAG	3 cut(s)	696, 1259, 1426
ZrmI	AGTACT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.