Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

17933587 .. 17934902

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGTTCTAAGGAACGAAAGAAAGCAGCTCTGTATGAGAAATTGCTGCAACTTCGTGCTGCCACTAATTCCAGTGCTCTGAACAAAACTTCAATTATTGTTGATGCATCCAAGTATATCGAGGAGTTGAAGCGCAAAGTGGACGCAATGAGCCAAGGCGTTGGAACTTCCCAGAATTCAATTACCCAAAATCCATTACCCGCGCAGGTTACAGTTGAAACCCTAGAAAAGGGTTTCCAAATTCATGTGTTGTCGGAAAAGAATTGCCCGGGTTTGCTGGTCTCCATTCTCGAAGCCTTTGAGGAGCTCGGCCTCGATGTGCTGGATGCTAGGGTTTCTTGTTCAGACACTTTCCAACTAGAAGCTGTTGGAGAAGCGGCGGATAGCATAGATGCTCAGGCGGTGAAAGAAGCAGTCTTGCAAGCTATTCAAACTTGGAGCACAAGCAGTGAGCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.57

Weight (kDa)

4.78

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	203
AciI	CCGC	4 cut(s)	201, 377, 380, 401
AcsI	RAATTY	2 cut(s)	175, 240
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	93, 130, 180, 218, 431
AluBI	AGCT	4 cut(s)	29, 307, 365, 425
AluI	AGCT	4 cut(s)	29, 307, 365, 425
Alw21I	GWGCWC	3 cut(s)	79, 309, 443
Alw26I	GTCTC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	26, 46, 59
ApoI	RAATTY	2 cut(s)	175, 240
AspLEI	GCGC	2 cut(s)	135, 205
AsuC2I	CCSGG	2 cut(s)	269, 270
AsuHPI	GGTGA	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	3 cut(s)	79, 309, 443
BbvI	GCAGC	3 cut(s)	33, 38, 46
BcnI	CCSGG	2 cut(s)	269, 270
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	3 cut(s)	224, 330, 359
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	27, 47, 60, 378
BlsI	GCNGC	4 cut(s)	28, 48, 61, 379
Bme1390I	CCNGG	2 cut(s)	269, 270
BmeT110I	CYCGRG	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	269, 270
BmsI	GCATC	4 cut(s)	94, 116, 316, 382
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	2 cut(s)	269, 270
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	154, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	154, 268
BseGI	GGATG	2 cut(s)	107, 331
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	137, 317
BseXI	GCAGC	3 cut(s)	33, 38, 46
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	79, 309, 443
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	79, 309, 443
BspACI	CCGC	4 cut(s)	201, 377, 380, 401
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	154, 268
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	9, 396
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	107, 331
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	135, 205
BstMAI	GTCTC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	267, 268
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	33, 38, 46
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	107, 331
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	79, 454
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	2 cut(s)	135, 205
Cfr9I	CCCGGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	152
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	7 cut(s)	29, 153, 296, 307, 312, 365, 425
CviKI_1	RGCY	7 cut(s)	29, 153, 296, 307, 312, 365, 425
DdeI	CTNAG	2 cut(s)	9, 396
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	248
FaiI	YATR	4 cut(s)	36, 117, 246, 389
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	27, 47, 60, 378
FokI	GGATG	2 cut(s)	94, 338
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	27, 47, 60, 378
FspBI	CTAG	3 cut(s)	224, 330, 359
GlaI	GCGC	2 cut(s)	134, 204
GluI	GCNGC	4 cut(s)	27, 47, 60, 378
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	135, 205
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	2 cut(s)	133, 203
HinP1I	GCGC	2 cut(s)	133, 203
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	81, 256, 346
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	49, 107, 421
HpyF3I	CTNAG	2 cut(s)	9, 396
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	2 cut(s)	133, 203
LmnI	GCTCC	2 cut(s)	304, 438
LpnPI	CCDG	7 cut(s)	85, 185, 191, 263, 282, 308, 383
Lsp1109I	GCAGC	3 cut(s)	33, 38, 46
LweI	GCATC	4 cut(s)	94, 116, 316, 382
MaeI	CTAG	3 cut(s)	224, 330, 359
MaeIII	GTNAC	1 cut(s)	208
MhlI	GDGCHC	3 cut(s)	79, 309, 443
MluCI	AATT	7 cut(s)	41, 67, 93, 175, 180, 240, 262
MmeI	TCCRAC	4 cut(s)	142, 234, 349, 379
MnlI	CCTC	3 cut(s)	115, 295, 323
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	460
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	269, 270
MvnI	CGCG	1 cut(s)	203
NciI	CCSGG	2 cut(s)	269, 270
NlaIII	CATG	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	28, 48, 61, 379
Psp124BI	GAGCTC	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	4 cut(s)	27, 47, 60, 378
ScrFI	CCNGG	2 cut(s)	269, 270
SduI	GDGCHC	3 cut(s)	79, 309, 443
SetI	ASST	5 cut(s)	31, 210, 309, 367, 427
SfaNI	GCATC	4 cut(s)	94, 116, 316, 382
SmaI	CCCGGG	1 cut(s)	270
Sse9I	AATT	7 cut(s)	41, 67, 93, 175, 180, 240, 262
SsiI	CCGC	4 cut(s)	201, 377, 380, 401
SspMI	CTAG	3 cut(s)	224, 330, 359
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	267, 268
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	120, 291, 315
TasI	AATT	7 cut(s)	41, 67, 93, 175, 180, 240, 262
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	2 cut(s)	79, 454
TseI	GCWGC	3 cut(s)	26, 46, 59
TspDTI	ATGAA	1 cut(s)	233
TspMI	CCCGGG	1 cut(s)	268
TspRI	CASTG	2 cut(s)	79, 454
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	175, 240
XmaI	CCCGGG	1 cut(s)	268
XspI	CTAG	3 cut(s)	224, 330, 359
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.