Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

19454417 .. 19456503

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25520.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTTTCTAGGGAGCACAAGAGAGCAGCACTTTATGAGAAGCTGCAGCTTCTTCGTTCCATTACTAACTCTCATGCTCTAAACCAAACCTCAATCATAGTAGACGCATCAAAGTACATTGAAGAGCTAAAACAGAAAGTGGAAATACTCAATCAAGACATTGCAGATGCAACTTCAAGTCACGACCAGAATCAATTGCCTGTGCAGGTTACAGTGGAAACCCTAGAAAAGGGGTTTTTGATAAACGTGTTTTCGGAAAAGAGCTGCCCAGGTTTGCTTGTTTCTGTACTGGAAGCCTTCGAAGAGTTGGGTCTAAATGTGCTTGAAGCTAGGGTTTCATGTGCAGAAAGTTTCAGATTGCAGGCAGTTGGAGGAGAAAATGAAGAAGAAGGTGAAGGGATTGATGCTCATGCAGTGAAACAGGCAGTGGCAGTGGCTATTAAGAACTGGAGTGAAAGTACCGAACAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.32

Weight (kDa)

4.74

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	69 - 147	8.7e-25	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	116, 288, 460
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	122, 177, 326
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	43, 49, 127, 264, 329
AluI	AGCT	5 cut(s)	43, 49, 127, 264, 329
Alw21I	GWGCWC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	26, 43, 46, 264
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	30, 38, 58, 251
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	3 cut(s)	9, 224, 330
BfmI	CTRYAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	27, 44, 47, 265
BlsI	GCNGC	4 cut(s)	28, 45, 48, 266
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	116, 157, 394
BpmI	CTGGAG	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	294, 452
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	294, 452
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	30, 38, 58, 251
BsgI	GTGCAG	2 cut(s)	224, 363
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	294, 452
BssECI	CCNNGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	117, 297
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	4 cut(s)	30, 38, 58, 251
BtsI	GCAGTG	3 cut(s)	420, 432, 438
BtsIMutI	CAGTG	4 cut(s)	219, 420, 432, 438
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	363
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	115, 287, 459
CviAII	CATG	3 cut(s)	74, 339, 410
CviJI	RGCY	7 cut(s)	43, 49, 127, 264, 296, 329, 437
CviKI_1	RGCY	7 cut(s)	43, 49, 127, 264, 296, 329, 437
CviQI	GTAC	3 cut(s)	115, 287, 459
Eam1104I	CTCTTC	2 cut(s)	117, 297
EarI	CTCTTC	2 cut(s)	117, 297
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	3 cut(s)	77, 342, 413
FaiI	YATR	5 cut(s)	36, 75, 98, 340, 411
FatI	CATG	3 cut(s)	73, 338, 409
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	27, 44, 47, 265
Fsp4HI	GCNGC	4 cut(s)	27, 44, 47, 265
FspBI	CTAG	3 cut(s)	9, 224, 330
GluI	GCNGC	4 cut(s)	27, 44, 47, 265
GsuI	CTGGAG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	77, 342, 413
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	256, 356
Hpy188III	TCNNGA	2 cut(s)	155, 182
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	307, 383, 389
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	46, 164, 170, 205, 344, 361, 413
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	77, 342, 413
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	191, 200, 213, 255, 275, 282, 347, 407, 433
Lsp1109I	GCAGC	4 cut(s)	30, 38, 58, 251
LweI	GCATC	3 cut(s)	116, 157, 394
MaeI	CTAG	3 cut(s)	9, 224, 330
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	179, 208
MboII	GAAGA	5 cut(s)	44, 134, 314, 395, 398
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	2 cut(s)	100, 365
MseI	TTAA	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	270
NlaIII	CATG	3 cut(s)	77, 342, 413
NmuCI	GTSAC	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	28, 45, 48, 266
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	116, 288, 460
RsaNI	GTAC	3 cut(s)	115, 287, 459
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	4 cut(s)	27, 44, 47, 265
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	116, 157, 394
SfcI	CTRYAG	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	300
Sse9I	AATT	1 cut(s)	194
SspMI	CTAG	3 cut(s)	9, 224, 330
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	194
TatI	WGTACW	2 cut(s)	114, 286
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	4 cut(s)	219, 420, 432, 438
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	26, 43, 46, 264
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	327, 396
TspRI	CASTG	4 cut(s)	219, 420, 432, 438
XagI	CCTNNNNNAGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	9, 224, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.