Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Reverse (-)

10016530 .. 10018232

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGGTAGAAGACACTCCCAAATCTGTTGTAACGGAAGAAGCTAAGCCTAATTCAATAGAGAATCCGATTGATCGATACCATGAGGAAGGTGATGATGCCGAAGAAGGAGAGATCGCCGGAGGAGAAGGAGACGGAAACGTTGACGAATCGAGCAAATCCGGTGTTCCTGAATCGCATCCTCTGGAACATTCATGGACTTTCTGGTTCGATAATCCTGCTGTGAAATCGAAACAAACCTCTTGGGGAAGTTCCTTGCGACCCGTGTTTACGTTTTCAACTGTTGAGGAATTTTGGAGTTTGTACAACAACATGAAGCATCCGAGCAAGTTAGCTCACGGAGCTGACTTCTACTGTTTCAAACACATCATTGAACCTAAGTGGGAGGATCCTATTTGTGCTAATGGAGGAAAATGGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACTTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTAAAAATGCTTCAAACGAAGCTGCTCAGGTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCATAGGTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005845 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0010494 GO:0031974 GO:0031981 GO:0032991 GO:0034059 GO:0034518 GO:0035770 GO:0036293 GO:0036464 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

235

Amino Acids

26.52

Weight (kDa)

5.0

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	61 - 212	2.4e-57	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 702
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	2 cut(s)	383, 396
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	57, 279, 361, 374, 576
AluBI	AGCT	6 cut(s)	44, 335, 344, 453, 584, 673
AluI	AGCT	6 cut(s)	44, 335, 344, 453, 584, 673
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	383, 396
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	104, 604
AxyI	CCTNAGG	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	571
BcgI	CGANNNNNNTGC	4 cut(s)	200, 234, 665, 699
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	585
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	390
BmsI	GCATC	4 cut(s)	88, 187, 328, 652
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bse21I	CCTNAGG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	76
BseGI	GGATG	4 cut(s)	178, 319, 651, 667
BseMII	CTCAG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	571
BshVI	ATCGAT	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	120, 162
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	688
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	73, 114, 388, 493
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	5, 702
BspCNI	CTCAG	1 cut(s)	601
BspDI	ATCGAT	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	383, 396
BsrGI	TGTACA	1 cut(s)	303
BssMI	GATC	4 cut(s)	73, 114, 388, 493
Bst4CI	ACNGT	2 cut(s)	283, 356
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	455, 471
BstDEI	CTNAG	4 cut(s)	45, 378, 432, 588
BstF5I	GGATG	4 cut(s)	178, 319, 651, 667
BstKTI	GATC	4 cut(s)	76, 117, 391, 496
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	4 cut(s)	73, 114, 388, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 692, 701
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Bsu15I	ATCGAT	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	178, 319, 651, 667
Cac8I	GCNNGC	2 cut(s)	455, 471
ClaI	ATCGAT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	5 cut(s)	83, 195, 313, 497, 656
CviJI	RGCY	8 cut(s)	44, 49, 335, 344, 453, 457, 584, 673
CviKI_1	RGCY	8 cut(s)	44, 49, 335, 344, 453, 457, 584, 673
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	45, 378, 432, 588
DpnI	GATC	4 cut(s)	75, 116, 390, 495
DpnII	GATC	4 cut(s)	73, 114, 388, 493
Eco32I	GATATC	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	5 cut(s)	86, 198, 316, 500, 659
FaiI	YATR	8 cut(s)	84, 196, 314, 422, 498, 511, 641, 657
FatI	CATG	5 cut(s)	82, 194, 312, 496, 655
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	4 cut(s)	165, 306, 638, 674
Fsp4HI	GCNGC	1 cut(s)	585
GluI	GCNGC	1 cut(s)	585
HapII	CCGG	2 cut(s)	120, 162
Hin1II	CATG	5 cut(s)	86, 198, 316, 500, 659
HincII	GTYRAC	2 cut(s)	145, 526
HindII	GTYRAC	2 cut(s)	145, 526
HinfI	GANTC	3 cut(s)	64, 149, 173
HpaII	CCGG	2 cut(s)	120, 162
HphI	GGTGA	2 cut(s)	104, 604
Hpy166II	GTNNAC	3 cut(s)	145, 270, 526
Hpy188I	TCNGA	3 cut(s)	69, 324, 445
Hpy188III	TCNNGA	3 cut(s)	170, 185, 623
Hpy8I	GTNNAC	3 cut(s)	145, 270, 526
HpyAV	CCTTC	4 cut(s)	83, 101, 122, 607
HpyCH4III	ACNGT	2 cut(s)	283, 356
HpyCH4IV	ACGT	2 cut(s)	141, 272
HpyCH4V	TGCA	2 cut(s)	473, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 692, 701
HpyF3I	CTNAG	4 cut(s)	45, 378, 432, 588
HpySE526I	ACGT	2 cut(s)	141, 272
Hsp92II	CATG	5 cut(s)	86, 198, 316, 500, 659
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	73, 114, 388, 493
LmnI	GCTCC	2 cut(s)	341, 515
LpnPI	CCDG	9 cut(s)	133, 170, 175, 183, 190, 231, 439, 575, 664
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	4 cut(s)	88, 187, 328, 652
MaeII	ACGT	2 cut(s)	141, 272
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	75, 116, 390, 495
MboI	GATC	4 cut(s)	73, 114, 388, 493
MboII	GAAGA	4 cut(s)	23, 50, 116, 679
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	52, 290
MnlI	CCTC	9 cut(s)	79, 116, 192, 250, 280, 379, 401, 527, 652
MslI	CAYNNNNRTG	2 cut(s)	501, 660
MspI	CCGG	2 cut(s)	120, 162
Mva1269I	GAATGC	1 cut(s)	688
MwoI	GCNNNNNNNGC	3 cut(s)	341, 692, 701
NdeII	GATC	4 cut(s)	73, 114, 388, 493
NlaIII	CATG	5 cut(s)	86, 198, 316, 500, 659
NlaIV	GGNNCC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	64, 149, 173
PkrI	GCNGC	1 cut(s)	586
Psp1406I	AACGTT	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	501, 660
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	4 cut(s)	73, 114, 388, 493
SfaNI	GCATC	4 cut(s)	88, 187, 328, 652
SmiMI	CAYNNNNRTG	2 cut(s)	501, 660
Sse9I	AATT	2 cut(s)	52, 290
SsiI	CCGC	2 cut(s)	5, 702
TaaI	ACNGT	2 cut(s)	283, 356
TaiI	ACGT	2 cut(s)	144, 275
TaqI	TCGA	6 cut(s)	76, 152, 210, 230, 624, 675
TasI	AATT	2 cut(s)	52, 290
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	64, 149, 173
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	4 cut(s)	183, 329, 519, 637
TspGWI	ACGGA	3 cut(s)	50, 150, 354
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.