Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Forward (+)

9344707 .. 9347410

Gene Structure 2704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGGTGGAAGACGCTTCAGCTTCGGAAGATCAGAGCAAGACGGAGTCGAACCCTAAATCAATGCAAGACGAGAACGAGCTGGAAGAAGGAGAGATCGTCGGCGGCGACGAGGTGTCTTCGAAGATCGCAAAGCCGCTGCACCACCCTCTGGAGCACTCATGGACCTTCTGGTTCGATAGCCCCTCGGCCAAGAACTCCAAGCCCAAGCAAGAGGATTGGGGCAGCTCTATTCGCCCGATCTACACCTTCTCTACTGTTGAGGAATTCTGGGGTATATACAATAATATACGCCATCCAAGCAAGTTGTCTATGGGGACGGACCTCCATTGTTTCAAAAACAAAATTGAGCCTAAGTGGGAGGATCCTGTTTGTGCTAATGGAGGGAAATGGACTCTAACTTTTACTAAAGGGAAATCTGATCATCCCTGGCTGCATACGTTGCTAGCACTGATTGGGGAACAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAATGTCAGAAGTAGGCAAGAAAAAATTGCTATTTGGACCAAGAATGCAGCAAATGAGGCTGCTCAGTTGAGCATTGGAAAACAATGGAAGGGCTTTCTGGATAACAACGAAGCTATAGGCTTCATATTTCATGACGATGCAAGGCGACAGGAGAGAGGTGCCAAGAATAGATACACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

227

Amino Acids

25.73

Weight (kDa)

5.61

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	50 - 203	1.4e-57	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	3 cut(s)	5, 105, 137
AclWI	GGATC	2 cut(s)	359, 372
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	681
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	337
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	23, 82, 228, 614
AluI	AGCT	4 cut(s)	23, 82, 228, 614
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	359, 372
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	5 cut(s)	139, 225, 433, 548, 560
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	165, 322, 537
AsuII	TTCGAA	1 cut(s)	122
AsuNHI	GCTAGC	1 cut(s)	445
AvaII	GGWCC	3 cut(s)	165, 322, 537
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	659
BbsI	GAAGAC	2 cut(s)	18, 111
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	5 cut(s)	126, 237, 420, 547, 560
BccI	CCATC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	2 cut(s)	421, 469
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	7 cut(s)	106, 137, 140, 226, 434, 549, 561
BlsI	GCNGC	7 cut(s)	107, 138, 141, 227, 435, 550, 562
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	3 cut(s)	165, 322, 537
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	165, 322, 537
BmiI	GGNNCC	2 cut(s)	366, 661
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	628
BmtI	GCTAGC	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	18, 111
BpmI	CTGGAG	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	186, 428
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	186, 428
BseGI	GGATG	2 cut(s)	295, 424
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	578
BseXI	GCAGC	5 cut(s)	126, 237, 420, 547, 560
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
BspACI	CCGC	3 cut(s)	5, 105, 137
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	366, 661
BspOI	GCTAGC	1 cut(s)	449
BspPI	GGATC	2 cut(s)	359, 372
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	186, 428
BssMI	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	259, 465, 679
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	354, 564
BstF5I	GGATG	2 cut(s)	295, 424
BstKTI	GATC	7 cut(s)	34, 99, 129, 243, 367, 424, 472
BstMBI	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 300, 442, 557
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	5 cut(s)	126, 237, 420, 547, 560
BstV2I	GAAGAC	2 cut(s)	18, 111
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	295, 424
BtsIMutI	CAGTG	2 cut(s)	449, 684
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	3 cut(s)	165, 322, 537
CseI	GACGC	1 cut(s)	23
CviAII	CATG	3 cut(s)	162, 473, 632
DdeI	CTNAG	2 cut(s)	354, 564
DpnI	GATC	7 cut(s)	33, 98, 128, 242, 366, 423, 471
DpnII	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
DraIII	CACNNNGTG	1 cut(s)	681
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	189
Eam1105I	GACNNNNNGTC	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	165, 322, 537
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	428
FaeI	CATG	3 cut(s)	165, 476, 635
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	3 cut(s)	161, 472, 631
FbaI	TGATCA	2 cut(s)	421, 469
Fnu4HI	GCNGC	7 cut(s)	106, 137, 140, 226, 434, 549, 561
FokI	GGATG	2 cut(s)	282, 411
Fsp4HI	GCNGC	7 cut(s)	106, 137, 140, 226, 434, 549, 561
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	7 cut(s)	106, 137, 140, 226, 434, 549, 561
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	191
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	165, 476, 635
HinfI	GANTC	2 cut(s)	47, 394
Hpy188I	TCNGA	4 cut(s)	28, 36, 421, 509
Hpy188III	TCNNGA	3 cut(s)	152, 599, 632
Hpy99I	CGWCG	2 cut(s)	104, 113
HpyAV	CCTTC	4 cut(s)	83, 178, 259, 583
HpyCH4III	ACNGT	3 cut(s)	259, 465, 679
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	67, 142, 436, 548, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 300, 442, 557
HpyF3I	CTNAG	2 cut(s)	354, 564
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	165, 476, 635
Ksp22I	TGATCA	2 cut(s)	421, 469
Kzo9I	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
LmnI	GCTCC	2 cut(s)	154, 491
LpnPI	CCDG	9 cut(s)	68, 137, 157, 256, 381, 415, 442, 584, 635
Lsp1109I	GCAGC	5 cut(s)	126, 237, 420, 547, 560
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	440
MalI	GATC	7 cut(s)	33, 98, 128, 242, 366, 423, 471
MboI	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
MboII	GAAGA	5 cut(s)	23, 41, 98, 111, 136
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	266, 345, 525
MlyI	GAGTC	2 cut(s)	56, 388
MslI	CAYNNNNRTG	2 cut(s)	477, 636
MspA1I	CMGCKG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	234, 300, 442, 557
NdeII	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	165, 476, 635
NlaIV	GGNNCC	2 cut(s)	366, 661
NmeAIII	GCCGAG	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	122
PagI	TCATGA	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 108
PctI	GAATGC	1 cut(s)	550
PflFI	GACNNNGTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	107, 138, 141, 227, 435, 550, 562
PleI	GAGTC	2 cut(s)	55, 388
PpsI	GAGTC	2 cut(s)	55, 388
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	366, 661
PspPI	GGNCC	3 cut(s)	165, 322, 537
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	477, 636
SatI	GCNGC	7 cut(s)	106, 137, 140, 226, 434, 549, 561
Sau3AI	GATC	7 cut(s)	31, 96, 126, 240, 364, 421, 469
Sau96I	GGNCC	3 cut(s)	165, 322, 537
SchI	GAGTC	2 cut(s)	56, 388
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	3 cut(s)	165, 322, 537
SmiMI	CAYNNNNRTG	2 cut(s)	477, 636
Sse9I	AATT	3 cut(s)	266, 345, 525
SsiI	CCGC	3 cut(s)	5, 105, 137
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	259, 465, 679
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	50, 122, 177
TasI	AATT	3 cut(s)	266, 345, 525
TauI	GCSGC	2 cut(s)	108, 139
TscAI	CASTG	2 cut(s)	456, 684
TseI	GCWGC	5 cut(s)	139, 225, 433, 548, 560
TspDTI	ATGAA	3 cut(s)	495, 613, 620
TspGWI	ACGGA	2 cut(s)	59, 335
TspRI	CASTG	2 cut(s)	456, 684
Tth111I	GACNNNGTC	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	3 cut(s)	165, 322, 537
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.