Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Reverse (-)

85582718 .. 85585276

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGTGGAAGACGCAGGCAAGACTTCAGCTTCGGAAGATCAGAGCAAGACGGAGTCGAACCCTAAATCAATGCAAGACGAGAACGAGCTGGAAGAAGGAGAGATCGTCGGCGGCGGCGGCGAGGAGGAGGAGTCTTCGAAGATCGCAAAGCCGCTGCACCACCCCCTGGAGCACTCATGGACCTTCTGGTTCGATAGCCCCTCGGCCAAGAACTCCAAGCCCAAGCAAGAGGATTGGGGCAGCTCTATTCGCCCGATCTACACCTTCTCTACTGTTGAGGAATTCTGGGGTATATACAATAATATACGCCATCCAACCAAGTTGTCTGTGGGGACGGACCTCCATTGTTTCAAAAACAAAATTGAGCCTAAGTGGGAGGATCCTGTTTGTGCTAATGGAGGGAAATGGACTCTAACTTTTACTAAAGGGAAATCTGATCATCCCTGGCTGCATACGTTGCTAGCATTGATTGGGGAACAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAATGTCAGAACTAGGCAAGAAAAAATTGCTATTTGGACCAAGAATGCAGTAAATGAGTCTGCTCAGATGAGCATTGGAAAACAATGGAAGGGTTTTCTGGATAGCAATGAAACTATAGGCTTCATATTTCATGAAGATGCAAGGCGACAGGAGAGAAGTGCCAAGAATAAATACACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

233

Amino Acids

26.38

Weight (kDa)

5.52

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	56 - 210	8.2e-57	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AciI	CCGC	5 cut(s)	5, 114, 117, 120, 155
AclWI	GGATC	2 cut(s)	377, 390
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	699
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	168, 446
AluBI	AGCT	3 cut(s)	32, 91, 246
AluI	AGCT	3 cut(s)	32, 91, 246
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	377, 390
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	157, 243, 451
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspS9I	GGNCC	3 cut(s)	183, 340, 555
AsuII	TTCGAA	1 cut(s)	140
AsuNHI	GCTAGC	1 cut(s)	463
AvaII	GGWCC	3 cut(s)	183, 340, 555
BamHI	GGATCC	1 cut(s)	382
BbsI	GAAGAC	2 cut(s)	18, 129
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	144, 255, 438
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	170, 448
BclI	TGATCA	2 cut(s)	439, 487
BfaI	CTAG	2 cut(s)	464, 531
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	7 cut(s)	115, 118, 121, 155, 158, 244, 452
BlsI	GCNGC	7 cut(s)	116, 119, 122, 156, 159, 245, 453
Bme1390I	CCNGG	2 cut(s)	170, 448
Bme18I	GGWCC	3 cut(s)	183, 340, 555
BmgT120I	GGNCC	3 cut(s)	183, 340, 555
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	170, 448
BmsI	GCATC	1 cut(s)	646
BmtI	GCTAGC	1 cut(s)	467
BpiI	GAAGAC	2 cut(s)	18, 129
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	168, 204, 446
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 119, 123, 149, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	170, 448
BseDI	CCNNGG	3 cut(s)	168, 204, 446
BseGI	GGATG	2 cut(s)	313, 442
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	596
BseRI	GAGGAG	3 cut(s)	140, 143, 146
BseXI	GCAGC	3 cut(s)	144, 255, 438
BsgI	GTGCAG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
BspACI	CCGC	5 cut(s)	5, 114, 117, 120, 155
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	377, 390
BspT104I	TTCGAA	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	631
BssECI	CCNNGG	3 cut(s)	168, 204, 446
BssMI	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
Bst2UI	CCWGG	2 cut(s)	170, 448
Bst4CI	ACNGT	3 cut(s)	277, 483, 697
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	19, 465
BstDEI	CTNAG	2 cut(s)	372, 582
BstF5I	GGATG	2 cut(s)	313, 442
BstKTI	GATC	7 cut(s)	43, 108, 147, 261, 385, 442, 490
BstMBI	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 252, 460
BstNI	CCWGG	2 cut(s)	170, 448
BstSCI	CCNGG	2 cut(s)	168, 446
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	144, 255, 438
BstV2I	GAAGAC	2 cut(s)	18, 129
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	313, 442
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	19, 465
CciI	TCATGA	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	183, 340, 555
CseI	GACGC	1 cut(s)	23
CviAII	CATG	3 cut(s)	180, 491, 650
DdeI	CTNAG	2 cut(s)	372, 582
DpnI	GATC	7 cut(s)	42, 107, 146, 260, 384, 441, 489
DpnII	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
DraIII	CACNNNGTG	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	207
Eco47I	GGWCC	3 cut(s)	183, 340, 555
Eco57I	CTGAAG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	168, 446
FaeI	CATG	3 cut(s)	183, 494, 653
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	179, 490, 649
FbaI	TGATCA	2 cut(s)	439, 487
Fnu4HI	GCNGC	7 cut(s)	115, 118, 121, 155, 158, 244, 452
FokI	GGATG	2 cut(s)	300, 429
Fsp4HI	GCNGC	7 cut(s)	115, 118, 121, 155, 158, 244, 452
FspBI	CTAG	2 cut(s)	464, 531
GluI	GCNGC	7 cut(s)	115, 118, 121, 155, 158, 244, 452
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	209
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	183, 494, 653
HinfI	GANTC	4 cut(s)	56, 134, 412, 575
Hpy188I	TCNGA	5 cut(s)	37, 45, 439, 527, 585
Hpy188III	TCNNGA	2 cut(s)	617, 650
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	92, 196, 277, 601
HpyCH4III	ACNGT	3 cut(s)	277, 483, 697
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	5 cut(s)	76, 160, 454, 566, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 252, 460
HpyF3I	CTNAG	2 cut(s)	372, 582
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	183, 494, 653
Ksp22I	TGATCA	2 cut(s)	439, 487
Kzo9I	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
LmnI	GCTCC	2 cut(s)	172, 509
Lsp1109I	GCAGC	3 cut(s)	144, 255, 438
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	464, 531
MaeII	ACGT	1 cut(s)	458
MalI	GATC	7 cut(s)	42, 107, 146, 260, 384, 441, 489
MboI	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
MboII	GAAGA	6 cut(s)	23, 50, 107, 129, 154, 665
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	284, 363, 543
MlyI	GAGTC	4 cut(s)	65, 143, 406, 584
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	9 cut(s)	118, 121, 124, 214, 226, 274, 353, 373, 395
MslI	CAYNNNNRTG	2 cut(s)	495, 654
MspA1I	CMGCKG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	170, 448
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	170, 448
MwoI	GCNNNNNNNGC	3 cut(s)	120, 252, 460
NdeII	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	183, 494, 653
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	649
PctI	GAATGC	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	7 cut(s)	116, 119, 122, 156, 159, 245, 453
PleI	GAGTC	4 cut(s)	64, 142, 406, 583
PpsI	GAGTC	4 cut(s)	64, 142, 406, 583
Psp6I	CCWGG	2 cut(s)	168, 446
PspGI	CCWGG	2 cut(s)	168, 446
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	183, 340, 555
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	495, 654
SatI	GCNGC	7 cut(s)	115, 118, 121, 155, 158, 244, 452
Sau3AI	GATC	7 cut(s)	40, 105, 144, 258, 382, 439, 487
Sau96I	GGNCC	3 cut(s)	183, 340, 555
SchI	GAGTC	4 cut(s)	65, 143, 406, 584
ScrFI	CCNGG	2 cut(s)	170, 448
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	34, 93, 188, 248, 269, 345, 461
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	3 cut(s)	183, 340, 555
SmiMI	CAYNNNNRTG	2 cut(s)	495, 654
Sse9I	AATT	3 cut(s)	284, 363, 543
SsiI	CCGC	5 cut(s)	5, 114, 117, 120, 155
SspMI	CTAG	2 cut(s)	464, 531
StyD4I	CCNGG	2 cut(s)	168, 446
TaaI	ACNGT	3 cut(s)	277, 483, 697
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	59, 140, 195
TasI	AATT	3 cut(s)	284, 363, 543
TauI	GCSGC	4 cut(s)	117, 120, 123, 157
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	3 cut(s)	157, 243, 451
TspDTI	ATGAA	5 cut(s)	513, 631, 638, 642, 666
TspGWI	ACGGA	2 cut(s)	68, 353
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	3 cut(s)	183, 340, 555
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	464, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.