Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Reverse (-)

3728158 .. 3731312

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTGGTGGAGGAGGCAGCCAAGACTATCTCAGCTTCAGAGGATCAGAGCAAGACGGAGTCGAACAACCCTAAATCAATGCAAGACGAGAACGAGCTCGAAGAAGGAGAGATCGTCGGCGGCGGCGACGACGAGTCGTCGAAGATGTCGAAGCCGCAGCAGCACCCTCTGGAGCACTCGTGGACCTTCTGGTTCGATATCCCGTCGTCCAAGCCCGGCAAGTCCAAGCAAGAGGATTGGGGCAGCTCGCTTCGCCCGATCTACACCTTCTCTACTGTTGAGGAGTTCTGGGGTATCTACAACAATATACGCCATCCAAGCAAGTTGAATGTGGGGACAGACTTCCATTGTTTCAAAAACAAAATTGAGCCAAAGTGGGAGGATCCTGTGTGTGCTAATGGAGGGAAATGGACTCTGACATTTCCTAAAGGGAAATCTGATAATTCCTGGCTGCATACGTTGCTGGCACTGATCGGGGAACAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAATGTTAGAGGCAGGCAAGAAAAAATTTCAATTTGGACCAAGAATGCAGAAAATGAGGCAGCTCAGATGAGCATTGGCAAACAATGGAAGAGCTTTCTGGATAGCAACGAAAATATAGGTTTCATATTTCATGAAGATGCAAGACGGGAGAGAAATCCCAAGAATAGTTACACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

233

Amino Acids

26.4

Weight (kDa)

5.25

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	56 - 211	8.7e-59	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 123, 155
AclWI	GGATC	3 cut(s)	51, 377, 390
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	328, 355, 549
AhdI	GACNNNNNGTC	2 cut(s)	133, 136
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	35, 97, 246, 581, 612
AluI	AGCT	5 cut(s)	35, 97, 246, 581, 612
Alw21I	GWGCWC	2 cut(s)	99, 177
AlwI	GGATC	3 cut(s)	51, 377, 390
ApeKI	GCWGC	6 cut(s)	17, 157, 160, 243, 451, 578
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	183, 555
AsuC2I	CCSGG	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	183, 555
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	99, 177
BbvI	GCAGC	6 cut(s)	29, 169, 172, 255, 438, 590
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	216
BisI	GCNGC	9 cut(s)	18, 121, 124, 155, 158, 161, 244, 452, 579
BlsI	GCNGC	9 cut(s)	19, 122, 125, 156, 159, 162, 245, 453, 580
Bme1390I	CCNGG	2 cut(s)	216, 448
Bme18I	GGWCC	2 cut(s)	183, 555
BmeRI	GACNNNNNGTC	2 cut(s)	133, 136
BmgT120I	GGNCC	2 cut(s)	183, 555
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	216, 448
BmsI	GCATC	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	6 cut(s)	99, 129, 164, 194, 501, 531
BseBI	CCWGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	45, 596
BseRI	GAGGAG	2 cut(s)	26, 296
BseXI	GCAGC	6 cut(s)	29, 169, 172, 255, 438, 590
BsiHKAI	GWGCWC	2 cut(s)	99, 177
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	99, 177
Bsp143I	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
BspACI	CCGC	3 cut(s)	120, 123, 155
BspCNI	CTCAG	2 cut(s)	44, 595
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	51, 377, 390
BspQI	GCTCTTC	1 cut(s)	602
BssMI	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	277, 483, 694
Bst6I	CTCTTC	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	248, 465, 533
BstDEI	CTNAG	2 cut(s)	31, 582
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	6 cut(s)	46, 114, 261, 385, 474, 490
BstMBI	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 252, 318, 460
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	214, 446
BstV1I	GCAGC	6 cut(s)	29, 169, 172, 255, 438, 590
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	467, 690
Cac8I	GCNNGC	3 cut(s)	248, 465, 533
CciI	TCATGA	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	183, 555
CviAII	CATG	2 cut(s)	491, 650
DdeI	CTNAG	2 cut(s)	31, 582
DpnI	GATC	6 cut(s)	45, 113, 260, 384, 473, 489
DpnII	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
DraIII	CACNNNGTG	1 cut(s)	696
DriI	GACNNNNNGTC	2 cut(s)	133, 136
Eam1104I	CTCTTC	1 cut(s)	602
Eam1105I	GACNNNNNGTC	2 cut(s)	133, 136
EarI	CTCTTC	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	183, 555
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	2 cut(s)	494, 653
FaiI	YATR	7 cut(s)	308, 456, 492, 505, 635, 644, 651
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	490, 649
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	9 cut(s)	18, 121, 124, 155, 158, 161, 244, 452, 579
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	9 cut(s)	18, 121, 124, 155, 158, 161, 244, 452, 579
GluI	GCNGC	9 cut(s)	18, 121, 124, 155, 158, 161, 244, 452, 579
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	494, 653
HinfI	GANTC	3 cut(s)	59, 134, 412
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	5 cut(s)	40, 48, 417, 439, 585
Hpy188III	TCNNGA	3 cut(s)	170, 617, 650
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	5 cut(s)	119, 131, 134, 142, 208
HpyAV	CCTTC	3 cut(s)	98, 196, 277
HpyCH4III	ACNGT	3 cut(s)	277, 483, 694
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	82, 454, 566, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 252, 318, 460
HpyF3I	CTNAG	2 cut(s)	31, 582
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	494, 653
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	2 cut(s)	172, 509
Lsp1109I	GCAGC	6 cut(s)	29, 169, 172, 255, 438, 590
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	6 cut(s)	45, 113, 260, 384, 473, 489
MboI	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
MboII	GAAGA	4 cut(s)	113, 154, 619, 665
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	99, 177
MluCI	AATT	4 cut(s)	363, 442, 543, 549
MlyI	GAGTC	3 cut(s)	68, 143, 406
MslI	CAYNNNNRTG	2 cut(s)	495, 654
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	216, 448
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	160, 252, 318, 460
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
NlaIII	CATG	2 cut(s)	494, 653
NlaIV	GGNNCC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 146, 254
PctI	GAATGC	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	9 cut(s)	19, 122, 125, 156, 159, 162, 245, 453, 580
PleI	GAGTC	3 cut(s)	67, 142, 406
PpsI	GAGTC	3 cut(s)	67, 142, 406
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	183, 555
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	495, 654
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	602
SatI	GCNGC	9 cut(s)	18, 121, 124, 155, 158, 161, 244, 452, 579
Sau3AI	GATC	6 cut(s)	43, 111, 258, 382, 471, 487
Sau96I	GGNCC	2 cut(s)	183, 555
SchI	GAGTC	3 cut(s)	68, 143, 406
ScrFI	CCNGG	2 cut(s)	216, 448
SduI	GDGCHC	2 cut(s)	99, 177
SetI	ASST	9 cut(s)	37, 99, 188, 248, 269, 461, 583, 614, 640
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	2 cut(s)	183, 555
SmiMI	CAYNNNNRTG	2 cut(s)	495, 654
Sse9I	AATT	4 cut(s)	363, 442, 543, 549
SsiI	CCGC	3 cut(s)	120, 123, 155
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	214, 446
TaaI	ACNGT	3 cut(s)	277, 483, 694
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	5 cut(s)	62, 99, 140, 149, 195
TasI	AATT	4 cut(s)	363, 442, 543, 549
TauI	GCSGC	3 cut(s)	123, 126, 157
TscAI	CASTG	2 cut(s)	474, 697
TseI	GCWGC	6 cut(s)	17, 157, 160, 243, 451, 578
TspDTI	ATGAA	4 cut(s)	513, 631, 638, 666
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	474, 697
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	183, 555
XapI	RAATTY	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.