Rh7DG406200

Belongs to the eukaryotic initiation factor 4E family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004106
Physical Location & Seq
Reverse (-)
56708063 .. 56714910
6848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG406200.1

Sequence Viewer

Length: 321 bp
ATGAGAAAGAAGGGGGGACTCTGGGGTGGAGAAAAGTACAGAAGCTTCTTGAATTGCATTGTTGCAAATGTGCAATTAAAAAGGGGAAATTTGCAAGCACTGATCGGGGAACAGTTTGATCATGGAGATGAAATATGTGGAGCAATTGTCAATGTCAGAAATAGGCAAGAAAAAATTGCTCTTTGGACCAAGAATGCAGCAAATGAGGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGGCATTCTAGAGAGCAATGAAACTACAGGGTTCATATTTCATGAAGATGAGAGCAGTGCTAAGAATAGATACAGAGTGTAG

Protein Analysis

106

Amino Acids

11.95

Weight (kDa)

9.26

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 31 - 89 5.1e-16 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 197, 209
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BbvI GCAGC 2 cut(s) 196, 209
BclI TGATCA 1 cut(s) 118
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 198, 210
BlsI GCNGC 2 cut(s) 199, 211
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse3DI GCAATG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 196, 209
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 199, 243
Bsp143I GATC 2 cut(s) 102, 118
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 262
BssMI GATC 2 cut(s) 102, 118
Bst4CI ACNGT 2 cut(s) 114, 234
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 213, 300
BstKTI GATC 2 cut(s) 105, 121
BstMBI GATC 2 cut(s) 102, 118
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 196, 209
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 98, 239, 301
Cac8I GCNNGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 122, 281
CviJI RGCY 2 cut(s) 45, 209
CviKI_1 RGCY 2 cut(s) 45, 209
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 213, 300
DpnI GATC 2 cut(s) 104, 120
DpnII GATC 2 cut(s) 102, 118
Eco47I GGWCC 1 cut(s) 186
FaeI CATG 2 cut(s) 125, 284
FaiI YATR 4 cut(s) 123, 136, 275, 282
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 121, 280
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 198, 210
Fsp4HI GCNGC 2 cut(s) 198, 210
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 198, 210
Hin1II CATG 2 cut(s) 125, 284
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 1 cut(s) 18
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 49, 248, 281
HpyAV CCTTC 2 cut(s) 4, 232
HpyCH4III ACNGT 2 cut(s) 114, 234
HpyCH4V TGCA 5 cut(s) 57, 65, 73, 94, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 213, 300
Hsp92II CATG 2 cut(s) 125, 284
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 102, 118
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 3 cut(s) 7, 200, 252
Lsp1109I GCAGC 2 cut(s) 196, 209
MaeI CTAG 1 cut(s) 248
MalI GATC 2 cut(s) 104, 120
MboI GATC 2 cut(s) 102, 118
MboII GAAGA 1 cut(s) 296
MfeI CAATTG 1 cut(s) 144
MluCI AATT 5 cut(s) 52, 74, 88, 144, 174
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 1 cut(s) 199
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 2 cut(s) 126, 285
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 2 cut(s) 199, 243
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 102, 118
NlaIII CATG 2 cut(s) 125, 284
PagI TCATGA 1 cut(s) 280
PctI GAATGC 2 cut(s) 199, 243
PkrI GCNGC 2 cut(s) 199, 211
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 126, 285
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 2 cut(s) 198, 210
Sau3AI GATC 2 cut(s) 102, 118
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 12
SetI ASST 2 cut(s) 47, 219
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 126, 285
Sse9I AATT 5 cut(s) 52, 74, 88, 144, 174
SspMI CTAG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 114, 234
TasI AATT 5 cut(s) 52, 74, 88, 144, 174
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 3 cut(s) 105, 239, 301
TseI GCWGC 2 cut(s) 197, 209
TspDTI ATGAA 5 cut(s) 144, 262, 269, 273, 297
TspRI CASTG 3 cut(s) 105, 239, 301
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 247
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.