Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006811.1

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Forward (+)

43819 .. 44952

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006811.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggggacggacctccattgtttcaaaaacaaaattgagcctaagtgggaggatcctgtttgtgctaatggagggaaatggactctaacttttactaaagggaaatctgatcatccctggctgcatacgttgctagcactgattggggaacagtttgatcatggagatgaaatatgtggagcagttgtcaatgtcagaagtaggcaagaaaaaattgctatttggaccaagaatgcagcaaatgaggctgctcagttgagcattggaaaacaatggaagggctttctggataacaacgaagctataggcttcatatttcatgacgatgcaaggcgacaggagagaggtgccaagaatagatacacagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

7.76

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	47, 60
AdeI	CACNNNGTG	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
AlwI	GGATC	2 cut(s)	47, 60
ApeKI	GCWGC	3 cut(s)	121, 236, 248
AspS9I	GGNCC	2 cut(s)	10, 225
AsuNHI	GCTAGC	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	10, 225
BamHI	GGATCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	108, 235, 248
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	2 cut(s)	109, 157
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	122, 237, 249
BlsI	GCNGC	3 cut(s)	123, 238, 250
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	10, 225
BmgT120I	GGNCC	2 cut(s)	10, 225
BmiI	GGNNCC	2 cut(s)	54, 349
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	316
BmtI	GCTAGC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	108, 235, 248
BshNI	GGYRCC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	52, 109, 157
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	54, 349
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	47, 60
BspT107I	GGYRCC	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	52, 109, 157
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	153, 367
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	42, 252
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	55, 112, 160
BstMBI	GATC	3 cut(s)	52, 109, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 245
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	108, 235, 248
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	137, 372
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	10, 225
CviAII	CATG	2 cut(s)	161, 320
CviJI	RGCY	6 cut(s)	40, 121, 248, 282, 302, 309
CviKI_1	RGCY	6 cut(s)	40, 121, 248, 282, 302, 309
DdeI	CTNAG	2 cut(s)	42, 252
DpnI	GATC	3 cut(s)	54, 111, 159
DpnII	GATC	3 cut(s)	52, 109, 157
DraIII	CACNNNGTG	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	10, 225
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	2 cut(s)	164, 323
FaiI	YATR	6 cut(s)	126, 162, 175, 305, 314, 321
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	160, 319
FbaI	TGATCA	2 cut(s)	109, 157
Fnu4HI	GCNGC	3 cut(s)	122, 237, 249
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	122, 237, 249
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	122, 237, 249
Hin1II	CATG	2 cut(s)	164, 323
HinfI	GANTC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	109, 197
Hpy188III	TCNNGA	2 cut(s)	287, 320
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	153, 367
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	124, 236, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 245
HpyF3I	CTNAG	2 cut(s)	42, 252
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	164, 323
Ksp22I	TGATCA	2 cut(s)	109, 157
Kzo9I	GATC	3 cut(s)	52, 109, 157
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	5 cut(s)	69, 103, 130, 272, 323
Lsp1109I	GCAGC	3 cut(s)	108, 235, 248
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	128
MalI	GATC	3 cut(s)	54, 111, 159
MboI	GATC	3 cut(s)	52, 109, 157
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	2 cut(s)	33, 213
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	23, 43, 65, 238, 338
MslI	CAYNNNNRTG	2 cut(s)	165, 324
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	130, 245
NdeII	GATC	3 cut(s)	52, 109, 157
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	164, 323
NlaIV	GGNNCC	2 cut(s)	54, 349
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	123, 238, 250
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	54, 349
PspPI	GGNCC	2 cut(s)	10, 225
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	165, 324
SatI	GCNGC	3 cut(s)	122, 237, 249
Sau3AI	GATC	3 cut(s)	52, 109, 157
Sau96I	GGNCC	2 cut(s)	10, 225
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	4 cut(s)	15, 131, 304, 349
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	10, 225
SmiMI	CAYNNNNRTG	2 cut(s)	165, 324
Sse9I	AATT	2 cut(s)	33, 213
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	153, 367
TaiI	ACGT	1 cut(s)	131
TasI	AATT	2 cut(s)	33, 213
TscAI	CASTG	2 cut(s)	144, 372
TseI	GCWGC	3 cut(s)	121, 236, 248
TspDTI	ATGAA	3 cut(s)	183, 301, 308
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	144, 372
VpaK11BI	GGWCC	2 cut(s)	10, 225
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.