RLG00000028411

Belongs to the eukaryotic initiation factor 4E family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004106
Physical Location & Seq
Forward (+)
22500794 .. 22512813
12020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028411

Sequence Viewer

Length: 348 bp
ATGGCATTCAAAAGCCGCGAATTGGAGGATCTTGTTTGTGCTAATGGAGGGAAATGGACTTTAACTTTTTCTAGAGGCAAATCTGACGATTCTTGGCTGTGTACGTTGCAAGCACTGATCAGAGAACAGTTTGATCATGGAGATGAAATATTTGGAGCAGTTGTCAATGTCAGAAATAGGCAAGAAAAAATTGCTCTTTGGACCAAGAATGCAGCAAATGAGGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGGCCTTCTGGAGAGCAACAAAACTATAGGGTTCATATTTCATGAAGATGCAAGGCAAGATGAGAGCAGTGCTAAGAATAGATATAGAGTGTAA

Protein Analysis

116

Amino Acids

13.09

Weight (kDa)

7.79

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 9 - 92 1.6e-22 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 36
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 10
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 212, 224
AspS9I GGNCC 2 cut(s) 201, 256
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 211, 224
BclI TGATCA 2 cut(s) 117, 133
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 3 cut(s) 16, 213, 225
BlsI GCNGC 3 cut(s) 17, 214, 226
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 201, 256
BmsI GCATC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 211, 224
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 2 cut(s) 5, 214
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 28, 117, 133
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 295
BspPI GGATC 1 cut(s) 36
BssMI GATC 3 cut(s) 28, 117, 133
Bst4CI ACNGT 2 cut(s) 129, 249
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 228, 327
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 3 cut(s) 31, 120, 136
BstMBI GATC 3 cut(s) 28, 117, 133
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 211, 224
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 113, 254, 328
Cac8I GCNNGC 1 cut(s) 111
CciI TCATGA 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 201, 256
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 137, 296
CviJI RGCY 4 cut(s) 15, 97, 224, 258
CviKI_1 RGCY 4 cut(s) 15, 97, 224, 258
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 228, 327
DpnI GATC 3 cut(s) 30, 119, 135
DpnII GATC 3 cut(s) 28, 117, 133
Eco47I GGWCC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 256
FaeI CATG 2 cut(s) 140, 299
FaiI YATR 5 cut(s) 138, 281, 290, 297, 339
FatI CATG 2 cut(s) 136, 295
FbaI TGATCA 2 cut(s) 117, 133
Fnu4HI GCNGC 3 cut(s) 16, 213, 225
Fsp4HI GCNGC 3 cut(s) 16, 213, 225
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 16, 213, 225
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 2 cut(s) 140, 299
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 85, 122, 173
Hpy188III TCNNGA 3 cut(s) 72, 263, 296
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 247, 269
HpyCH4III ACNGT 2 cut(s) 129, 249
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 109, 212, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 228, 327
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 140, 299
Ksp22I TGATCA 2 cut(s) 117, 133
Kzo9I GATC 3 cut(s) 28, 117, 133
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 2 cut(s) 215, 248
Lsp1109I GCAGC 2 cut(s) 211, 224
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 104
MalI GATC 3 cut(s) 30, 119, 135
MboI GATC 3 cut(s) 28, 117, 133
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 28
MluCI AATT 2 cut(s) 20, 189
MnlI CCTC 4 cut(s) 19, 41, 68, 214
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 2 cut(s) 141, 300
Mva1269I GAATGC 2 cut(s) 5, 214
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 3 cut(s) 28, 117, 133
NlaIII CATG 2 cut(s) 140, 299
PagI TCATGA 1 cut(s) 295
PctI GAATGC 2 cut(s) 5, 214
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 17, 214, 226
PspPI GGNCC 2 cut(s) 201, 256
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 141, 300
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 16, 213, 225
Sau3AI GATC 3 cut(s) 28, 117, 133
Sau96I GGNCC 2 cut(s) 201, 256
SetI ASST 2 cut(s) 107, 234
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 141, 300
Sse9I AATT 2 cut(s) 20, 189
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 129, 249
TaiI ACGT 1 cut(s) 107
TasI AATT 2 cut(s) 20, 189
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 3 cut(s) 120, 254, 328
TseI GCWGC 2 cut(s) 212, 224
TspDTI ATGAA 4 cut(s) 159, 277, 284, 312
TspRI CASTG 3 cut(s) 120, 254, 328
VpaK11BI GGWCC 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 71
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.