Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Reverse (-)

3550173 .. 3553106

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G072600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGGTCGAAGACGCACCCAAGACTTCAGCTTCAGAAGATCAGGCCAAGACCGAGACGAACCCTAAACCAAGGGAAGAGGACGATGAGCCCGAAGAAGGAGAGATCGTGGGCGACGAAGAATCGGCGTCGAAGCCATCGAAAGGAATAGCGCCACAGTCTCATGCTCTGGAGCACTCATGGACCTTCTGGTTCGATAGCCCCGCAGCAAAGTCCGCTAAGACTAAGCAAGAGGATTGGGGGAGTTCCATTCGCCCGATCTATACCTTCAGTACCGTCGAGGAGTTCTGGAGCATTTACAATAATATACGTCATCCAAGCAAGTTGGCTCTTGGCACGGACTTCCATTGTTTCAAATATAAAATTGAGCCAAAGTGGGAGGATCCTGTGTGTGCTAATGGAGGGAAGTGGACTGTAACTTTTCCTAAAGGGAAATCTGATACTTCTTGGCTGTATACGTTGCTAGGAATGATAGGAGAACAGTTTGATCATGGAGATGAAATTTGTGGAGCAGTTGTCAACGTCAGAAATAGGCAAGAAAAGATATCTATTTGGACGAAGAATGCAATAAATGAAGCTGCTCAGCTGAGCATTGGGAAACAGTGGAAGGGGTTTCTGGATTACAATGAAACTATAGGGTTCATATTTCATGAGGATGCAATGAGACAAGAGAGAAGTGCCAAAAATAAATACGTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

234

Amino Acids

26.44

Weight (kDa)

5.17

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	455
AciI	CCGC	2 cut(s)	204, 216
AclWI	GGATC	2 cut(s)	377, 390
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	3 cut(s)	12, 18, 253
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	98, 143
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	3 cut(s)	32, 578, 586
AluI	AGCT	3 cut(s)	32, 578, 586
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	3 cut(s)	50, 165, 658
AlwI	GGATC	2 cut(s)	377, 390
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	206, 578
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	218, 565
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	3 cut(s)	50, 165, 658
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	2 cut(s)	207, 579
BlpI	GCTNAGC	2 cut(s)	582, 587
BlsI	GCNGC	2 cut(s)	208, 580
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	191, 310
Bpu1102I	GCTNAGC	2 cut(s)	582, 587
BsaAI	YACGTR	1 cut(s)	694
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 143
Bse3DI	GCAATG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	313, 661
BseLI	CCNNNNNNNGG	2 cut(s)	98, 143
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	578, 596
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	218, 565
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	98, 143
BsmAI	GTCTC	3 cut(s)	50, 165, 658
BsmBI	CGTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	93, 177
Bsp143I	GATC	5 cut(s)	40, 105, 258, 382, 487
Bsp1720I	GCTNAGC	2 cut(s)	582, 587
BspACI	CCGC	2 cut(s)	204, 216
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	579, 595
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	377, 390
BsrDI	GCAATG	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	5 cut(s)	40, 105, 258, 382, 487
BssNAI	GTATAC	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	456
Bst4CI	ACNGT	5 cut(s)	159, 277, 415, 483, 603
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	694
BstDEI	CTNAG	4 cut(s)	219, 225, 582, 587
BstF5I	GGATG	2 cut(s)	313, 661
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	43, 108, 261, 385, 490
BstMAI	GTCTC	3 cut(s)	50, 165, 658
BstMBI	GATC	5 cut(s)	40, 105, 258, 382, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	633
BstSNI	TACGTA	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	218, 565
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	313, 661
BtsIMutI	CAGTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	2 cut(s)	23, 117
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	4 cut(s)	164, 180, 491, 650
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	219, 225, 582, 587
DpnI	GATC	5 cut(s)	42, 107, 260, 384, 489
DpnII	GATC	5 cut(s)	40, 105, 258, 382, 487
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	3 cut(s)	12, 18, 253
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	4 cut(s)	167, 183, 494, 653
FatI	CATG	4 cut(s)	163, 179, 490, 649
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	207, 579
FokI	GGATG	2 cut(s)	300, 668
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	207, 579
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	207, 579
GsuI	CTGGAG	2 cut(s)	191, 310
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	47
HgaI	GACGC	2 cut(s)	23, 117
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	167, 183, 494, 653
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	411, 456, 520
Hpy188I	TCNGA	3 cut(s)	37, 439, 527
Hpy188III	TCNNGA	4 cut(s)	170, 289, 617, 650
Hpy8I	GTNNAC	3 cut(s)	411, 456, 520
Hpy99I	CGWCG	3 cut(s)	119, 133, 281
HpyAV	CCTTC	4 cut(s)	92, 196, 277, 601
HpyCH4III	ACNGT	5 cut(s)	159, 277, 415, 483, 603
HpyCH4IV	ACGT	4 cut(s)	310, 458, 522, 693
HpyCH4V	TGCA	2 cut(s)	566, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	4 cut(s)	219, 225, 582, 587
HpySE526I	ACGT	4 cut(s)	310, 458, 522, 693
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	167, 183, 494, 653
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	40, 105, 258, 382, 487
LmnI	GCTCC	3 cut(s)	172, 291, 509
LpnPI	CCDG	6 cut(s)	29, 155, 175, 274, 399, 602
Lsp1109I	GCAGC	2 cut(s)	218, 565
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	4 cut(s)	310, 458, 522, 693
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	42, 107, 260, 384, 489
MboI	GATC	5 cut(s)	40, 105, 258, 382, 487
MboII	GAAGA	6 cut(s)	23, 50, 89, 107, 131, 571
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	93, 177
MluCI	AATT	2 cut(s)	363, 501
MnlI	CCTC	6 cut(s)	73, 226, 274, 373, 395, 646
MslI	CAYNNNNRTG	2 cut(s)	495, 654
MspA1I	CMGCKG	1 cut(s)	586
Mva1269I	GAATGC	1 cut(s)	568
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	5 cut(s)	40, 105, 258, 382, 487
NlaIII	CATG	4 cut(s)	167, 183, 494, 653
NlaIV	GGNNCC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 114, 137
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	208, 580
Ppu21I	YACGTR	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	2 cut(s)	495, 654
SatI	GCNGC	2 cut(s)	207, 579
Sau3AI	GATC	5 cut(s)	40, 105, 258, 382, 487
Sau96I	GGNCC	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	93, 177
SetI	ASST	9 cut(s)	34, 188, 269, 313, 461, 525, 580, 588, 696
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	495, 654
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	2 cut(s)	363, 501
SsiI	CCGC	2 cut(s)	204, 216
SspMI	CTAG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	5 cut(s)	159, 277, 415, 483, 603
TaiI	ACGT	4 cut(s)	313, 461, 525, 696
TaqI	TCGA	5 cut(s)	9, 131, 140, 195, 279
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	363, 501
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	608
TseI	GCWGC	2 cut(s)	206, 578
TspDTI	ATGAA	5 cut(s)	513, 588, 631, 638, 642
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.