pycom02g18730

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
16850509 .. 16852752
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18730.4

Sequence Viewer

Length: 1614 bp
ATGCACACACAAGTTAAACCGTTTCCTCATAGCACCTTCCTTAAGAAGGCACATACCGTACTTCCCAACGATACCCGCCTTCTTGGTTCTCTTCGTCTGCATAACACCAGAGATAATCAGAATGGAATGCAAGGCAACAAATTCAAGTTCTTCCAGAATTCGAAAAAGAAGAAAAATATGCAAACTACATCGATAACACTAAGGGCAGGTTTTAGGACTATAATCCTACGTTTGGTAGGTTGTGGGACTAAAATAAATGGGACTCGCCTCGACTACAAGTGTCTGCGCGCTTCGCTAAAGACTAGAAGAAGGAAACCAGGCCGACATCCAATCCCCACTTTCGCTTGCCCCCCCCCCCCCCCCCCCCCCCCAGTCCCTCCACGCTCCGCCTTCTTCTGCGGAGCCGTCACCATGGCCCGGCCGTCGGCAATGACCCACCTTCATCTTTTGTGCAACCAAGATTCGGTGTCGTCGAGGGAGGACGACAACGAGCTTGAAGAAGAGATCGTCAACGACCAAGATTCGGTGTCGTCGAAGCCACCTAAAGGAATAGCGCTGCAGTCGCACACTTTATATTATATGGATTTGGCATTGCAGTGTGAAGTTCTGGGTTTAATTTTGATGTTAATTTCTTTCATTTCCTTTTTTTTTTTTTGGGTCTCTTTCTCGAAGGAATATACAGTGTGTGGTCTTTATCTCCATTTTCTAGTGTTTTACACTGCGTTTCCAATTCTGGGTTTAGTTTTGATTTCTGGACCTCTTGATATCATATCGATTGCGATCCTAAAAATTGGAAACAATGAATTTGGCTCCATGTGGCGTTGCATTTCTTTCTTAATTTCTTGTTCTCTTATTAACAAAAAAAATTGGGTCAATATTTTAGTCCGACATTTAGTCCGGCACTACACTAAATATTTCACTAGTTTTATTTTATTTAGTCTAAGTCAAGCTAGTCCAGTGATATCAATTGAGATGAAATCGCCAAAGAAAAACTTCCAAGGGAGGAAAAATACAATTGAACCACGACTGCTGCATTTCTTCGAAACAGAAATAGAACAAGAGGAACAATGCACAGAATCTAAAAATAGGGCACAGAAATCAGCAAACAGCGACAGTAAGACAGTCAGCAATACCATTCGACAAAAGATTAAAACTAACAGTTTTTTTGGGGGGGGGGGGGGGGGGGGTTTGTATTTCTGTCGGCCCTTTTCTTTTGGGCTTTTTATTTCTGTTGGGGGAAGACGGGAAGGTCGTGAACTCCTGGTTTGGAGAGATTTTTTCTTAATGCGTCAGGATACGGAGCAGTACGTGTGGGGGGAAGGCTTTTTGTTGTGTCCTTCTTTTTATATAATAATACTAGTCTCTCCACACATGCTCACGCATGTTATGTTAGCTGATTTCTTTCTCATACCGCATCCTAAAAATAAAATACAACATACAATTACAAATAAAAGGAAATGGAATATAATTAAGTTGTGTGATAAAAGAAAGGCTTCTTGCAGGGCGCTCACGCCCCTTACAATGTGTTGTGTTAGATATTTTATTTATCATGTCATAAAAACAAAATTCAACATACAGTTGCTTGAACTGGACAATGTAACATACGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

61.57

Weight (kDa)

9.74

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1248
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 1 cut(s) 288
AciI CCGC 4 cut(s) 76, 387, 399, 1412
AclWI GGATC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 4 cut(s) 140, 157, 803, 1565
AfaI GTAC 2 cut(s) 60, 1307
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 8 cut(s) 46, 232, 417, 424, 463, 523, 545, 734
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 1308
AgsI TTSAA 5 cut(s) 145, 497, 1019, 1570, 1586
AhdI GACNNNNNGTC 1 cut(s) 893
AhlI ACTAGT 2 cut(s) 920, 1357
AjnI CCWGG 2 cut(s) 316, 1260
AluBI AGCT 3 cut(s) 493, 950, 1394
AluI AGCT 3 cut(s) 493, 950, 1394
Alw26I GTCTC 2 cut(s) 664, 1366
AlwI GGATC 1 cut(s) 775
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 4 cut(s) 319, 414, 419, 1202
ApeKI GCWGC 2 cut(s) 556, 1030
ApoI RAATTY 4 cut(s) 140, 157, 803, 1565
Asp700I GAANNNNTTC 2 cut(s) 992, 1492
AspLEI GCGC 4 cut(s) 288, 290, 556, 1507
AspS9I GGNCC 3 cut(s) 415, 755, 1203
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 400
AsuII TTCGAA 2 cut(s) 161, 1041
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 1093
BbsI GAAGAC 1 cut(s) 1246
BbvI GCAGC 2 cut(s) 543, 1017
BceAI ACGGC 2 cut(s) 389, 406
BciT130I CCWGG 2 cut(s) 318, 1262
BciVI GTATCC 1 cut(s) 1288
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 664, 1366
BcuI ACTAGT 2 cut(s) 920, 1357
BfaI CTAG 6 cut(s) 303, 707, 921, 951, 1358, 1612
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 2 cut(s) 557, 1508
BfrI CTTAAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 1288
BisI GCNGC 2 cut(s) 557, 1031
BlsI GCNGC 2 cut(s) 558, 1032
Bme1390I CCNGG 3 cut(s) 318, 418, 1262
Bme18I GGWCC 1 cut(s) 755
BmeRI GACNNNNNGTC 1 cut(s) 893
BmgT120I GGNCC 3 cut(s) 415, 755, 1203
BmiI GGNNCC 2 cut(s) 403, 811
BmrFI CCNGG 3 cut(s) 318, 418, 1262
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 1423
BmuI ACTGGG 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 1246
Bpu14I TTCGAA 2 cut(s) 161, 1041
BpuMI CCSGG 1 cut(s) 418
Bsa29I ATCGAT 2 cut(s) 191, 773
BsaAI YACGTR 1 cut(s) 1309
BsaBI GATNNNNATC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 411, 997
Bsc4I CCNNNNNNNGG 8 cut(s) 46, 232, 417, 424, 463, 523, 545, 734
Bse1I ACTGG 3 cut(s) 371, 956, 1593
Bse3DI GCAATG 2 cut(s) 435, 590
Bse8I GATNNNNATC 1 cut(s) 779
BseBI CCWGG 2 cut(s) 318, 1262
BseCI ATCGAT 2 cut(s) 191, 773
BseDI CCNNGG 2 cut(s) 411, 997
BseGI GGATG 2 cut(s) 325, 1414
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 8 cut(s) 46, 232, 417, 424, 463, 523, 545, 734
BseMI GCAATG 2 cut(s) 435, 590
BseNI ACTGG 3 cut(s) 371, 956, 1593
BsePI GCGCGC 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 1093
BseX3I CGGCCG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 543, 1017
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 4 cut(s) 321, 416, 421, 1204
BshVI ATCGAT 2 cut(s) 191, 773
BsiEI CGRYCG 1 cut(s) 422
BsiSI CCGG 2 cut(s) 418, 898
BslFI GGGAC 3 cut(s) 259, 274, 359
BslI CCNNNNNNNGG 8 cut(s) 46, 232, 417, 424, 463, 523, 545, 734
BsmAI GTCTC 2 cut(s) 664, 1366
BsmFI GGGAC 3 cut(s) 259, 274, 359
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 4 cut(s) 321, 416, 421, 1204
Bso31I GGTCTC 1 cut(s) 664
Bsp119I TTCGAA 2 cut(s) 161, 1041
Bsp1286I GDGCHC 1 cut(s) 1093
Bsp143I GATC 2 cut(s) 504, 780
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 4 cut(s) 76, 387, 399, 1412
BspANI GGCC 4 cut(s) 321, 416, 421, 1204
BspDI ATCGAT 2 cut(s) 191, 773
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 403, 811
BspMAI CTGCAG 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 1 cut(s) 775
BspT104I TTCGAA 2 cut(s) 161, 1041
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 664
BsrDI GCAATG 2 cut(s) 435, 590
BsrI ACTGG 3 cut(s) 371, 956, 1593
BssECI CCNNGG 2 cut(s) 411, 997
BssHII GCGCGC 1 cut(s) 286
BssMI GATC 2 cut(s) 504, 780
BssT1I CCWWGG 2 cut(s) 411, 997
Bst2UI CCWGG 2 cut(s) 318, 1262
Bst4CI ACNGT 8 cut(s) 21, 58, 682, 1115, 1123, 1160, 1578, 1607
Bst6I CTCTTC 2 cut(s) 96, 495
BstAFI CTTAAG 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 1309
BstBI TTCGAA 2 cut(s) 161, 1041
BstC8I GCNNGC 2 cut(s) 288, 346
BstDEI CTNAG 2 cut(s) 200, 941
BstDSI CCRYGG 1 cut(s) 411
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 325, 1414
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 2 cut(s) 557, 1508
BstHHI GCGC 4 cut(s) 288, 290, 556, 1507
BstKTI GATC 2 cut(s) 507, 783
BstMAI GTCTC 2 cut(s) 664, 1366
BstMBI GATC 2 cut(s) 504, 780
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 292, 562
BstNI CCWGG 2 cut(s) 318, 1262
BstNSI RCATGY 2 cut(s) 1375, 1385
BstSCI CCNGG 3 cut(s) 316, 416, 1260
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 1093
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 543, 1017
BstV2I GAAGAC 1 cut(s) 1246
BstZI CGGCCG 1 cut(s) 419
Bsu15I ATCGAT 2 cut(s) 191, 773
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 4 cut(s) 321, 416, 421, 1204
BsuTUI ATCGAT 2 cut(s) 191, 773
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 325, 1414
BtsI GCAGTG 2 cut(s) 602, 717
BtsIMutI CAGTG 4 cut(s) 602, 687, 717, 963
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 288, 346
CfoI GCGC 4 cut(s) 288, 290, 556, 1507
Cfr13I GGNCC 3 cut(s) 415, 755, 1203
ClaI ATCGAT 2 cut(s) 191, 773
CseI GACGC 1 cut(s) 1277
Csp6I GTAC 2 cut(s) 59, 1306
CviAII CATG 5 cut(s) 412, 814, 1372, 1382, 1550
CviQI GTAC 2 cut(s) 59, 1306
DdeI CTNAG 2 cut(s) 200, 941
DpnI GATC 2 cut(s) 506, 782
DpnII GATC 2 cut(s) 504, 780
DrdI GACNNNNNNGTC 1 cut(s) 1248
DriI GACNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 1248
EaeI YGGCCR 1 cut(s) 419
EagI CGGCCG 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 96, 495
Eam1105I GACNNNNNGTC 1 cut(s) 893
EarI CTCTTC 2 cut(s) 96, 495
EciI GGCGGA 1 cut(s) 376
EclXI CGGCCG 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 411, 997
Eco31I GGTCTC 1 cut(s) 664
Eco32I GATATC 2 cut(s) 766, 963
Eco47I GGWCC 1 cut(s) 755
Eco47III AGCGCT 1 cut(s) 555
Eco52I CGGCCG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 316, 1260
EcoRV GATATC 2 cut(s) 766, 963
EcoT14I CCWWGG 2 cut(s) 411, 997
ErhI CCWWGG 2 cut(s) 411, 997
FaeI CATG 5 cut(s) 415, 817, 1375, 1385, 1553
FalI AAGNNNNNCTT 4 cut(s) 977, 1009, 1477, 1509
FaqI GGGAC 3 cut(s) 259, 274, 359
FatI CATG 5 cut(s) 411, 813, 1371, 1381, 1549
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 557, 1031
FokI GGATG 2 cut(s) 312, 1401
Fsp4HI GCNGC 2 cut(s) 557, 1031
FspBI CTAG 6 cut(s) 303, 707, 921, 951, 1358, 1612
GlaI GCGC 4 cut(s) 287, 289, 555, 1506
GluI GCNGC 2 cut(s) 557, 1031
HaeII RGCGCY 2 cut(s) 557, 1508
HaeIII GGCC 4 cut(s) 321, 416, 421, 1204
HapII CCGG 2 cut(s) 418, 898
HgaI GACGC 1 cut(s) 1277
HhaI GCGC 4 cut(s) 288, 290, 556, 1507
Hin1II CATG 5 cut(s) 415, 817, 1375, 1385, 1553
Hin6I GCGC 4 cut(s) 286, 288, 554, 1505
HinP1I GCGC 4 cut(s) 286, 288, 554, 1505
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 4 cut(s) 262, 461, 521, 1076
HpaII CCGG 2 cut(s) 418, 898
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 511, 1256
Hpy188I TCNGA 2 cut(s) 120, 887
Hpy188III TCNNGA 6 cut(s) 154, 667, 753, 761, 1253, 1292
Hpy8I GTNNAC 2 cut(s) 511, 1256
Hpy99I CGWCG 3 cut(s) 427, 475, 535
HpyCH4III ACNGT 8 cut(s) 21, 58, 682, 1115, 1123, 1160, 1578, 1607
HpyCH4IV ACGT 2 cut(s) 229, 1308
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 562
HpyF3I CTNAG 2 cut(s) 200, 941
HpySE526I ACGT 2 cut(s) 229, 1308
Hsp92II CATG 5 cut(s) 415, 817, 1375, 1385, 1553
HspAI GCGC 4 cut(s) 286, 288, 554, 1505
Kzo9I GATC 2 cut(s) 504, 780
LmnI GCTCC 4 cut(s) 389, 401, 815, 1300
Lsp1109I GCAGC 2 cut(s) 543, 1017
LweI GCATC 1 cut(s) 1423
MaeI CTAG 6 cut(s) 303, 707, 921, 951, 1358, 1612
MaeII ACGT 2 cut(s) 229, 1308
MaeIII GTNAC 3 cut(s) 406, 1597, 1607
MalI GATC 2 cut(s) 506, 782
MboI GATC 2 cut(s) 504, 780
MboII GAAGA 9 cut(s) 83, 142, 181, 318, 385, 509, 512, 1030, 1251
MfeI CAATTG 2 cut(s) 966, 1014
MhlI GDGCHC 1 cut(s) 1093
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 910
MnlI CCTC 8 cut(s) 36, 278, 387, 468, 472, 768, 996, 1054
MroXI GAANNNNTTC 2 cut(s) 992, 1492
MseI TTAA 9 cut(s) 15, 42, 614, 626, 836, 855, 1149, 1283, 1470
MslI CAYNNNNRTG 1 cut(s) 595
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 2 cut(s) 418, 898
MspR9I CCNGG 3 cut(s) 318, 418, 1262
MunI CAATTG 2 cut(s) 966, 1014
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 318, 1262
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 292, 562
NciI CCSGG 1 cut(s) 418
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 504, 780
NlaIII CATG 5 cut(s) 415, 817, 1375, 1385, 1553
NlaIV GGNNCC 2 cut(s) 403, 811
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 2 cut(s) 1375, 1385
NspV TTCGAA 2 cut(s) 161, 1041
PauI GCGCGC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 3 cut(s) 470, 530, 1249
PctI GAATGC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 992, 1492
PfeI GAWTC 3 cut(s) 461, 521, 1076
PkrI GCNGC 2 cut(s) 558, 1032
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 1309
Psp6I CCWGG 2 cut(s) 316, 1260
PspGI CCWGG 2 cut(s) 316, 1260
PspN4I GGNNCC 2 cut(s) 403, 811
PspPI GGNCC 3 cut(s) 415, 755, 1203
PstI CTGCAG 1 cut(s) 561
PteI GCGCGC 1 cut(s) 286
RsaI GTAC 2 cut(s) 60, 1307
RsaNI GTAC 2 cut(s) 59, 1306
RseI CAYNNNNRTG 1 cut(s) 595
SaqAI TTAA 9 cut(s) 15, 42, 614, 626, 836, 855, 1149, 1283, 1470
SatI GCNGC 2 cut(s) 557, 1031
Sau3AI GATC 2 cut(s) 504, 780
Sau96I GGNCC 3 cut(s) 415, 755, 1203
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 3 cut(s) 318, 418, 1262
SduI GDGCHC 1 cut(s) 1093
SfaNI GCATC 1 cut(s) 1423
SfcI CTRYAG 1 cut(s) 557
SfuI TTCGAA 2 cut(s) 161, 1041
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 2 cut(s) 920, 1357
SsiI CCGC 4 cut(s) 76, 387, 399, 1412
SspI AATATT 2 cut(s) 877, 914
SspMI CTAG 6 cut(s) 303, 707, 921, 951, 1358, 1612
StyD4I CCNGG 3 cut(s) 316, 416, 1260
StyI CCWWGG 2 cut(s) 411, 997
TaaI ACNGT 8 cut(s) 21, 58, 682, 1115, 1123, 1160, 1578, 1607
TaiI ACGT 2 cut(s) 232, 1311
TaqI TCGA 9 cut(s) 161, 191, 270, 473, 533, 668, 773, 1041, 1138
TfiI GAWTC 3 cut(s) 461, 521, 1076
Tru1I TTAA 9 cut(s) 15, 42, 614, 626, 836, 855, 1149, 1283, 1470
Tru9I TTAA 9 cut(s) 15, 42, 614, 626, 836, 855, 1149, 1283, 1470
TscAI CASTG 4 cut(s) 602, 687, 724, 963
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 556, 1030
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 4 cut(s) 431, 625, 816, 989
TspGWI ACGGA 1 cut(s) 1313
TspRI CASTG 4 cut(s) 602, 687, 724, 963
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 755
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 4 cut(s) 140, 157, 803, 1565
XceI RCATGY 2 cut(s) 1375, 1385
XmnI GAANNNNTTC 2 cut(s) 992, 1492
XspI CTAG 6 cut(s) 303, 707, 921, 951, 1358, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.