Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004106

Physical Location & Seq

Genomic Coordinates Forward (+)

9694782 .. 9706589

Gene Structure 11808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGGTGGAAGACGCAGGCAAGACTTCAGCTTCGGAAGATCAGAGCAAGACGGAGTCGAACCCTAAATCAATGCAAGACGAGAACGAGCTCGAGGAAGGAGAGATCGTCGGCGGCGGCGAGGAGGTGTCTTCGAAGATCGCAAAGCCGCTGCGCCACCCTTTGGAGCACTCATGGACCTTCTGGTTCGATAGCCCCTCGGCCAAGAACTCCAAGCCCAAGCAAGAGGATTGGGGCAGCTCTATTCGCCCGATCTACACCTTCTCTACTGTTGAGGAATTCTGGGGTATTTACGATACCACACAACTTGTGAGAAAGATAGTTGCACACTTGGAGATATACTGCTTGAAATCCAGCATTGGGTCAGCTTGTGAGGATCTTGTTCAAGGAAGAAAATGGACACTAAGCTTTTCTAAAGGGAAACCAATGTGGGAGTATCCTGTTTGTGCTAATAGAGGCAAATGGACTTTAACTTTTTCTAGAGGGAAATCTGACAATTCCTGGCTATCTACGATATGGTCGAAACTGCAGGGAGAGTTGCTAGCACTGATCGGGGAACATTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAATGTCAGAAATAGGCAAGAAAAAATTGCTGTTTGGACCAAGAATGCACAAATGAGATTGCTCAGCATTGGAAAACAGTGGAAGGGCTTTCTGGAGAGCAACGAAACTGTAGGGTTCAGGTTTCATGAAGATACAAGGCGCGATGGAGCAGCGCTAAGAATAGATACGCAGTGTAATCTCTATCTTGCTCTGTGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009628 GO:0034059 GO:0036293 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

266

Amino Acids

30.07

Weight (kDa)

5.94

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	54 - 139	8.6e-16	Eukaryotic initiation factor 4E
IF4E	PF01652	141 - 235	4.1e-21	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18040
fragaria_vesca	FvH4_3g06500 FvH4_6g40690 FvH4_6g40690
malus_domestica	MD05G1292800.v1.1 MD10G1268600.v1.1 MD10G1268700.v1.1
prunus_persica	Prupe.4G072600_v2.0.a1
pyrus_communis	pycom02g18730 pycom05g26930 pycom10g22520
rosa_chinensis	RchiOBHm_Chr1g0351341 RchiOBHm_Chr5g0012781
rosa_laevigata	RLG00000011566 RLG00000028411 RLG00000031930 RLG00000031941 RLG00000031944 RLG00000031954
rosa_multiflora	Rmu_sc0000089.1_g000002 Rmu_sc0006811.1_g000012 Rmu_sc0011161.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063810 Rroxscaffold_4G00303860
rosa_rugosa	Rorug05G0004000 Rorug05G0004000
rosa_samantha	Rh1BG202600 Rh5AG097900 Rh5BG094900 Rh5CG106800 Rh5DG093600 Rh7DG406200
rosa_wichuraiana	Rw5G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccII	CGCG	1 cut(s)	738
AciI	CCGC	4 cut(s)	5, 114, 117, 149
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	12
AfeI	AGCGCT	1 cut(s)	750
AfiI	CCNNNNNNNGG	2 cut(s)	163, 360
AgsI	TTSAA	2 cut(s)	349, 386
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	5 cut(s)	32, 91, 240, 368, 408
AluI	AGCT	5 cut(s)	32, 91, 240, 368, 408
Alw21I	GWGCWC	2 cut(s)	93, 171
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	750
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	151, 237, 746
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspLEI	GCGC	3 cut(s)	156, 738, 751
AspS9I	GGNCC	2 cut(s)	177, 633
AsuII	TTCGAA	1 cut(s)	134
AsuNHI	GCTAGC	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	177, 633
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	2 cut(s)	18, 123
Bbv12I	GWGCWC	2 cut(s)	93, 171
BbvI	GCAGC	3 cut(s)	138, 249, 758
BccI	CCATC	1 cut(s)	734
BciT130I	CCWGG	1 cut(s)	502
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	2 cut(s)	480, 542
BfmI	CTRYAG	2 cut(s)	527, 705
BfoI	RGCGCY	1 cut(s)	752
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	6 cut(s)	115, 118, 149, 152, 238, 747
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	6 cut(s)	116, 119, 150, 153, 239, 748
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	2 cut(s)	177, 633
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	177, 633
BmrFI	CCNGG	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	18, 123
BpmI	CTGGAG	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	659
Bpu14I	TTCGAA	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 360
Bse1I	ACTGG	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	163, 360
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	138, 249, 758
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	93, 171
BsiHKCI	CYCGRG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	163, 360
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	93, 171
Bsp143I	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	4 cut(s)	5, 114, 117, 149
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	738
BspHI	TCATGA	1 cut(s)	721
BspMAI	CTGCAG	1 cut(s)	531
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	3 cut(s)	271, 675, 706
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	19, 543
BstDEI	CTNAG	3 cut(s)	404, 659, 752
BstFNI	CGCG	1 cut(s)	738
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	3 cut(s)	156, 738, 751
BstKTI	GATC	7 cut(s)	43, 108, 141, 255, 379, 552, 568
BstMBI	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	527, 705
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	138, 249, 758
BstV2I	GAAGAC	2 cut(s)	18, 123
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	753
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	3 cut(s)	545, 680, 773
Cac8I	GCNNGC	2 cut(s)	19, 543
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	3 cut(s)	156, 738, 751
Cfr13I	GGNCC	2 cut(s)	177, 633
CseI	GACGC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	3 cut(s)	174, 569, 722
DdeI	CTNAG	3 cut(s)	404, 659, 752
DpnI	GATC	7 cut(s)	42, 107, 140, 254, 378, 551, 567
DpnII	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
EaeI	YGGCCR	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	177, 633
Eco47III	AGCGCT	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	3 cut(s)	177, 572, 725
FaiI	YATR	6 cut(s)	175, 340, 517, 570, 583, 723
FatI	CATG	3 cut(s)	173, 568, 721
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	6 cut(s)	115, 118, 149, 152, 238, 747
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	115, 118, 149, 152, 238, 747
FspBI	CTAG	2 cut(s)	480, 542
GlaI	GCGC	3 cut(s)	155, 737, 750
GluI	GCNGC	6 cut(s)	115, 118, 149, 152, 238, 747
GsuI	CTGGAG	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	3 cut(s)	156, 738, 751
Hin1II	CATG	3 cut(s)	177, 572, 725
Hin6I	GCGC	3 cut(s)	154, 736, 749
HinP1I	GCGC	3 cut(s)	154, 736, 749
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	1 cut(s)	56
Hpy188I	TCNGA	4 cut(s)	37, 45, 493, 605
Hpy188III	TCNNGA	3 cut(s)	480, 689, 722
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	92, 190, 271, 673
HpyCH4III	ACNGT	3 cut(s)	271, 675, 706
HpyCH4V	TGCA	4 cut(s)	76, 326, 529, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	404, 659, 752
Hsp92II	CATG	3 cut(s)	177, 572, 725
HspAI	GCGC	3 cut(s)	154, 736, 749
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
LmnI	GCTCC	3 cut(s)	166, 587, 743
Lsp1109I	GCAGC	3 cut(s)	138, 249, 758
MaeI	CTAG	2 cut(s)	480, 542
MalI	GATC	7 cut(s)	42, 107, 140, 254, 378, 551, 567
MboI	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
MboII	GAAGA	6 cut(s)	23, 50, 123, 148, 402, 737
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	93, 171
MluCI	AATT	3 cut(s)	278, 496, 621
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	88, 115, 118, 208, 220, 268, 367, 449, 476
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	502
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	177, 572, 725
NmeAIII	GCCGAG	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	92
PagI	TCATGA	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 518
PctI	GAATGC	1 cut(s)	646
PflFI	GACNNNGTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	6 cut(s)	116, 119, 150, 153, 239, 748
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspPI	GGNCC	2 cut(s)	177, 633
PspXI	VCTCGAGB	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	6 cut(s)	115, 118, 149, 152, 238, 747
Sau3AI	GATC	7 cut(s)	40, 105, 138, 252, 376, 549, 565
Sau96I	GGNCC	2 cut(s)	177, 633
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	2 cut(s)	93, 171
SetI	ASST	9 cut(s)	34, 93, 129, 182, 242, 263, 370, 410, 719
SfcI	CTRYAG	2 cut(s)	527, 705
Sfr274I	CTCGAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	2 cut(s)	177, 633
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	278, 496, 621
SsiI	CCGC	4 cut(s)	5, 114, 117, 149
SspMI	CTAG	2 cut(s)	480, 542
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	271, 675, 706
TaqI	TCGA	5 cut(s)	59, 93, 134, 189, 521
TasI	AATT	3 cut(s)	278, 496, 621
TauI	GCSGC	3 cut(s)	117, 120, 151
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	3 cut(s)	552, 680, 773
TseI	GCWGC	3 cut(s)	151, 237, 746
TspDTI	ATGAA	3 cut(s)	591, 710, 738
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	3 cut(s)	552, 680, 773
Tth111I	GACNNNGTC	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	177, 633
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	479
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	2 cut(s)	480, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.