RchiOBHm_Chr1g0351341

Belongs to the eukaryotic initiation factor 4E family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004106
Physical Location & Seq
Reverse (-)
44628864 .. 44629754
891 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57713

Sequence Viewer

Length: 276 bp
ATGACTATTCATGGCTGTTTGCAAGCACTGATTGGAGAACAGTTTGATCATGGAGACGAAATATGTGGAGCAGTTGTCAATGTCAGAAATAGGCAAAAAAAAATTGCTCTTTGGACCAAGAATGCAGCAAATGAGGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGGCATTCTGGAGAGCAACGAAACTATAGGGTTCATATTTCATGTAAGGATATCTATACAAGTATGTTATCTGTTGATTTATTCAAATCATGTTAAGTTATATAAGTAA

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

8.89

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 7 - 63 1.8e-16 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 125, 137
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 124, 137
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 126, 138
BlsI GCNGC 2 cut(s) 127, 139
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 124, 137
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmI GAATGC 2 cut(s) 127, 171
Bsp143I GATC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 154
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 42, 162
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 141
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 124, 137
BtsIMutI CAGTG 2 cut(s) 26, 167
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 4 cut(s) 11, 50, 209, 257
CviJI RGCY 2 cut(s) 15, 137
CviKI_1 RGCY 2 cut(s) 15, 137
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 114
EcoRV GATATC 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 14, 53, 212, 260
FatI CATG 4 cut(s) 10, 49, 208, 256
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 126, 138
Fsp4HI GCNGC 2 cut(s) 126, 138
GluI GCNGC 2 cut(s) 126, 138
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 4 cut(s) 14, 53, 212, 260
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 42, 162
HpyCH4V TGCA 2 cut(s) 22, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 4 cut(s) 14, 53, 212, 260
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 128, 161
Lsp1109I GCAGC 2 cut(s) 124, 137
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MluCI AATT 1 cut(s) 102
MnlI CCTC 1 cut(s) 127
MseI TTAA 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 127, 171
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 46
NlaIII CATG 4 cut(s) 14, 53, 212, 260
PctI GAATGC 2 cut(s) 127, 171
PkrI GCNGC 2 cut(s) 127, 139
PspPI GGNCC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 126, 138
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 114
SetI ASST 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 9 cut(s) 23, 35, 62, 130, 155, 188, 221, 239, 269
SinI GGWCC 1 cut(s) 114
Sse9I AATT 1 cut(s) 102
TaaI ACNGT 2 cut(s) 42, 162
TasI AATT 1 cut(s) 102
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 33, 167
TseI GCWGC 2 cut(s) 125, 137
TspDTI ATGAA 2 cut(s) 190, 197
TspRI CASTG 2 cut(s) 33, 167
VpaK11BI GGWCC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.