Brf1-like TBP-binding domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BRF1 | PF07741 | 36 - 124 | 6.1e-07 | Brf1-like TBP-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 239, 252, 365 |
| AcsI | RAATTY | 2 cut(s) | 155, 587 |
| AcuI | CTGAAG | 2 cut(s) | 185, 504 |
| AgsI | TTSAA | 4 cut(s) | 441, 469, 587, 593 |
| AluBI | AGCT | 2 cut(s) | 364, 400 |
| AluI | AGCT | 2 cut(s) | 364, 400 |
| Alw26I | GTCTC | 1 cut(s) | 319 |
| AlwI | GGATC | 3 cut(s) | 239, 252, 365 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 311 |
| ApoI | RAATTY | 2 cut(s) | 155, 587 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 3 cut(s) | 98, 217, 434 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 262, 294 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BceAI | ACGGC | 1 cut(s) | 586 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 284, 318 |
| BcoDI | GTCTC | 1 cut(s) | 319 |
| BfaI | CTAG | 5 cut(s) | 30, 231, 267, 401, 599 |
| BglII | AGATCT | 1 cut(s) | 595 |
| BmiI | GGNNCC | 1 cut(s) | 246 |
| BmsI | GCATC | 2 cut(s) | 109, 532 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BsaI | GGTCTC | 1 cut(s) | 319 |
| Bse1I | ACTGG | 2 cut(s) | 410, 521 |
| Bse3DI | GCAATG | 2 cut(s) | 307, 580 |
| BseMI | GCAATG | 2 cut(s) | 307, 580 |
| BseMII | CTCAG | 4 cut(s) | 114, 123, 366, 488 |
| BseNI | ACTGG | 2 cut(s) | 410, 521 |
| BsmAI | GTCTC | 1 cut(s) | 319 |
| BsmI | GAATGC | 1 cut(s) | 569 |
| Bso31I | GGTCTC | 1 cut(s) | 319 |
| Bsp143I | GATC | 4 cut(s) | 88, 244, 370, 595 |
| BspCNI | CTCAG | 4 cut(s) | 115, 124, 367, 487 |
| BspLI | GGNNCC | 1 cut(s) | 246 |
| BspPI | GGATC | 3 cut(s) | 239, 252, 365 |
| BspTNI | GGTCTC | 1 cut(s) | 319 |
| BsrDI | GCAATG | 2 cut(s) | 307, 580 |
| BsrI | ACTGG | 2 cut(s) | 410, 521 |
| BssMI | GATC | 4 cut(s) | 88, 244, 370, 595 |
| Bst4CI | ACNGT | 3 cut(s) | 78, 452, 533 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstDEI | CTNAG | 5 cut(s) | 123, 132, 140, 375, 474 |
| BstEII | GGTNACC | 1 cut(s) | 422 |
| BstKTI | GATC | 4 cut(s) | 91, 247, 373, 598 |
| BstMAI | GTCTC | 1 cut(s) | 319 |
| BstMBI | GATC | 4 cut(s) | 88, 244, 370, 595 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 128 |
| BstPI | GGTNACC | 1 cut(s) | 422 |
| BstX2I | RGATCY | 2 cut(s) | 244, 595 |
| BstYI | RGATCY | 2 cut(s) | 244, 595 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 311 |
| CviAII | CATG | 1 cut(s) | 177 |
| CviJI | RGCY | 4 cut(s) | 29, 364, 400, 462 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 364, 400, 462 |
| DdeI | CTNAG | 5 cut(s) | 123, 132, 140, 375, 474 |
| DpnI | GATC | 4 cut(s) | 90, 246, 372, 597 |
| DpnII | GATC | 4 cut(s) | 88, 244, 370, 595 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| Eco31I | GGTCTC | 1 cut(s) | 319 |
| Eco32I | GATATC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 2 cut(s) | 185, 504 |
| Eco91I | GGTNACC | 1 cut(s) | 422 |
| EcoO65I | GGTNACC | 1 cut(s) | 422 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRV | GATATC | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 180 |
| FaiI | YATR | 5 cut(s) | 46, 48, 178, 216, 549 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 75, 107, 447, 479 |
| FatI | CATG | 1 cut(s) | 176 |
| FspBI | CTAG | 5 cut(s) | 30, 231, 267, 401, 599 |
| Hin1II | CATG | 1 cut(s) | 180 |
| HinfI | GANTC | 2 cut(s) | 136, 580 |
| HphI | GGTGA | 3 cut(s) | 98, 217, 434 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 165, 484 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 374, 584, 599 |
| HpyAV | CCTTC | 4 cut(s) | 78, 199, 235, 617 |
| HpyCH4III | ACNGT | 3 cut(s) | 78, 452, 533 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 284, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 128 |
| HpyF3I | CTNAG | 5 cut(s) | 123, 132, 140, 375, 474 |
| Hsp92II | CATG | 1 cut(s) | 180 |
| Kzo9I | GATC | 4 cut(s) | 88, 244, 370, 595 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 7 cut(s) | 207, 215, 261, 387, 423, 502, 525 |
| LweI | GCATC | 2 cut(s) | 109, 532 |
| MaeI | CTAG | 5 cut(s) | 30, 231, 267, 401, 599 |
| MaeIII | GTNAC | 2 cut(s) | 223, 422 |
| MalI | GATC | 4 cut(s) | 90, 246, 372, 597 |
| MboI | GATC | 4 cut(s) | 88, 244, 370, 595 |
| MflI | RGATCY | 2 cut(s) | 244, 595 |
| MluCI | AATT | 5 cut(s) | 155, 182, 343, 587, 630 |
| MnlI | CCTC | 5 cut(s) | 91, 118, 384, 517, 545 |
| MroXI | GAANNNNTTC | 1 cut(s) | 159 |
| Mva1269I | GAATGC | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 128 |
| NdeII | GATC | 4 cut(s) | 88, 244, 370, 595 |
| NlaIII | CATG | 1 cut(s) | 180 |
| NlaIV | GGNNCC | 1 cut(s) | 246 |
| NmuCI | GTSAC | 2 cut(s) | 223, 422 |
| PctI | GAATGC | 1 cut(s) | 569 |
| PdmI | GAANNNNTTC | 1 cut(s) | 159 |
| PfeI | GAWTC | 2 cut(s) | 136, 580 |
| PspEI | GGTNACC | 1 cut(s) | 422 |
| PspN4I | GGNNCC | 1 cut(s) | 246 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 182, 214 |
| PstNI | CAGNNNCTG | 1 cut(s) | 311 |
| PsuI | RGATCY | 2 cut(s) | 244, 595 |
| Sau3AI | GATC | 4 cut(s) | 88, 244, 370, 595 |
| SetI | ASST | 5 cut(s) | 39, 88, 129, 366, 402 |
| SfaNI | GCATC | 2 cut(s) | 109, 532 |
| Sse9I | AATT | 5 cut(s) | 155, 182, 343, 587, 630 |
| SspI | AATATT | 1 cut(s) | 437 |
| SspMI | CTAG | 5 cut(s) | 30, 231, 267, 401, 599 |
| TaaI | ACNGT | 3 cut(s) | 78, 452, 533 |
| TaqI | TCGA | 1 cut(s) | 73 |
| TaqII | GACCGA | 1 cut(s) | 343 |
| TasI | AATT | 5 cut(s) | 155, 182, 343, 587, 630 |
| TfiI | GAWTC | 2 cut(s) | 136, 580 |
| TscAI | CASTG | 2 cut(s) | 121, 457 |
| TseFI | GTSAC | 2 cut(s) | 223, 422 |
| Tsp45I | GTSAC | 2 cut(s) | 223, 422 |
| TspDTI | ATGAA | 5 cut(s) | 148, 203, 552, 624, 636 |
| TspRI | CASTG | 2 cut(s) | 121, 457 |
| XapI | RAATTY | 2 cut(s) | 155, 587 |
| XbaI | TCTAGA | 1 cut(s) | 598 |
| XmnI | GAANNNNTTC | 1 cut(s) | 159 |
| XspI | CTAG | 5 cut(s) | 30, 231, 267, 401, 599 |