Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

17319276 .. 17319566

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGGTGGTAACTATGCACCTGACTTTGAAGAAGGCAGACATGGTGATATGCAGCACTCAAATGACAAATTCGATGGTGAAGCACAAAGTTTTGGAGGCAGTTATGATGATGATTTGGATAATGAGCATGCATATATTGAAGATGCTGAAGGCAAAAAAGAAAACCTTTCTCAAACTCAAAGTATCTCAAAGTTTAGACCAAGAATCTATCTTCGAAGTTACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

4.87

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	27, 49, 92, 203
AoxI	GGCC	2 cut(s)	17, 42
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	119, 152
AsuII	TTCGAA	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	277
BseGI	GGATG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	19, 44
BsnI	GGCC	2 cut(s)	19, 44
Bsp119I	TTCGAA	1 cut(s)	277
BspANI	GGCC	2 cut(s)	19, 44
BspT104I	TTCGAA	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	19, 44
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	192
CviAII	CATG	2 cut(s)	104, 191
CviJI	RGCY	2 cut(s)	19, 44
CviKI_1	RGCY	2 cut(s)	19, 44
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	2 cut(s)	107, 194
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	2 cut(s)	103, 190
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	19, 44
Hin1II	CATG	2 cut(s)	107, 194
HinfI	GANTC	1 cut(s)	267
HphI	GGTGA	2 cut(s)	119, 152
HpyAV	CCTTC	2 cut(s)	89, 206
HpyCH4V	TGCA	3 cut(s)	80, 115, 194
Hsp92II	CATG	2 cut(s)	107, 194
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	71, 281
MboII	GAAGA	5 cut(s)	61, 74, 104, 215, 266
MluCI	AATT	2 cut(s)	53, 131
MnlI	CCTC	4 cut(s)	9, 34, 58, 152
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	123
NlaIII	CATG	2 cut(s)	107, 194
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	194
NspV	TTCGAA	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	116
SetI	ASST	2 cut(s)	85, 231
SfaNI	GCATC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	277
SgeI	CNNG	6 cut(s)	33, 58, 95, 116, 203, 276
SmiMI	CAYNNNNRTG	1 cut(s)	123
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	53, 131
SseBI	AGGCCT	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	135, 277
TasI	AATT	2 cut(s)	53, 131
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	75
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.