Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

60888388 .. 60888972

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCATTCCGAAAGCGATCCAAGTCGAGGCAAGAGCAGAAAGCTGATGAGGGTAATGGTTTTGATGAGGGCTCAAGTACATCAGACTCGGATAGTAGTGATAATGTCTCGGAAAGTCTTTCTGATATTGACGATGCCGAGATTTCTCCATACCTACTAACCAAGAAGGAGGCACTGTATAAAACCATCATCTGGGAAGCAATGCACAAGGATTATGTCGAGAAAAGAAGTACTAGAAAAAGAGCCAGAAAAGCCAAGGAAGCTGGTCCTCTGAGAAAGGCAGCCAAAACTTCTACCAAGAAATCGGATGAAGGTTCAAAAATCAACTATAATGCCATAAATGAAGAGGATTGCAGGTTGGAAGAAGGTTTGGATGAAGAGGCTCAAGACGGACAAGGCTATTATGATGATAATTATGAGTCTGAGCATGAAAACCAGTACAATGAAGAGGACGAGTCTTATTATGCAAATGATGATGGTGATGATAACGGGCACAATGATGGATGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

170

Amino Acids

19.44

Weight (kDa)

4.54

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRF1	PF07741	41 - 104	9.2e-10	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	79, 232, 440
AfiI	CCNNNNNNNGG	2 cut(s)	27, 192
AgsI	TTSAA	1 cut(s)	318
AluBI	AGCT	2 cut(s)	44, 263
AluI	AGCT	2 cut(s)	44, 263
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	194, 470, 494, 498
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	58, 369
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 192
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	313, 379, 509
BseLI	CCNNNNNNNGG	2 cut(s)	27, 192
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	263, 414
BseNI	ACTGG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	27, 192
BsmAI	GTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	74, 495
Bsp143I	GATC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	264, 415
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	339, 372, 441
BstDEI	CTNAG	2 cut(s)	272, 423
BstF5I	GGATG	3 cut(s)	313, 379, 509
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 260
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	313, 379, 509
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	78, 231, 439
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 383, 399
CviKI_1	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 383, 399
CviQI	GTAC	3 cut(s)	78, 231, 439
DdeI	CTNAG	2 cut(s)	272, 423
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	339, 372, 441
EarI	CTCTTC	3 cut(s)	339, 372, 441
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	431
FaiI	YATR	9 cut(s)	151, 180, 216, 330, 338, 405, 417, 429, 465
FatI	CATG	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	320, 386
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	431
HinfI	GANTC	3 cut(s)	86, 419, 455
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	9 cut(s)	11, 85, 91, 112, 124, 273, 307, 424, 512
Hpy188III	TCNNGA	2 cut(s)	220, 386
HpyAV	CCTTC	3 cut(s)	160, 305, 359
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	205, 354, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 260
HpyF3I	CTNAG	2 cut(s)	272, 423
Hsp92II	CATG	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	5 cut(s)	178, 249, 259, 340, 449
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	356, 374, 389, 458
MhlI	GDGCHC	2 cut(s)	74, 495
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	3 cut(s)	80, 428, 464
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	8 cut(s)	21, 43, 61, 163, 279, 340, 373, 442
MslI	CAYNNNNRTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	251, 260
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	163
PctI	GAATGC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	3 cut(s)	80, 427, 463
PpsI	GAGTC	3 cut(s)	80, 427, 463
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	3 cut(s)	79, 232, 440
RsaNI	GTAC	3 cut(s)	78, 231, 439
RseI	CAYNNNNRTG	1 cut(s)	498
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	3 cut(s)	80, 428, 464
SduI	GDGCHC	2 cut(s)	74, 495
SetI	ASST	6 cut(s)	46, 156, 265, 316, 359, 370
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	73, 384
SmoI	CTYRAG	2 cut(s)	73, 384
Sse9I	AATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	26, 219
TasI	AATT	1 cut(s)	412
TatI	WGTACW	3 cut(s)	77, 230, 438
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	324, 357, 390, 444, 459
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	266
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.