Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

14535111 .. 14536989

Gene Structure 1879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAATTGTTTTCACGTTTCAGGTGGGTCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCGCAGATTGCTCCATACCTTAACAACAAGAAGAAGACATTCTATAAAAGCATCATTTGGGAAGCGATGAACAGAGATTCTGCTAAGGGAAACAGCAGAAAACAAGCACGAAAACCTCAGAAAGCTGCTCCTCCAAACAAAGCAGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAAACATGCAGCTGACTTTGAAGAAGGCAGCCATGGTGATATGCAGCACTCAAATGACAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTATGATGATGAGTTGGATAATGAACATGCATATAGTGATCGAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

5.56

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	225, 368
AgsI	TTSAA	3 cut(s)	264, 286, 329
AluBI	AGCT	2 cut(s)	200, 320
AluI	AGCT	2 cut(s)	200, 320
Alw26I	GTCTC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	254, 279
ApeKI	GCWGC	4 cut(s)	200, 317, 336, 352
ApoI	RAATTY	2 cut(s)	225, 368
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	356, 389
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	187, 329, 348, 364
BccI	CCATC	2 cut(s)	232, 299
BcoDI	GTCTC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	201, 318, 337, 353
BlsI	GCNGC	4 cut(s)	202, 319, 338, 354
BmsI	GCATC	3 cut(s)	64, 135, 437
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	247, 310
BseMII	CTCAG	3 cut(s)	63, 206, 225
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	187, 329, 348, 364
BshFI	GGCC	2 cut(s)	256, 281
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	256, 281
Bsp143I	GATC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	340
BspANI	GGCC	2 cut(s)	256, 281
BspCNI	CTCAG	3 cut(s)	62, 205, 226
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	49, 159, 192, 234
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	247, 310
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	317, 431
BstV1I	GCAGC	4 cut(s)	187, 329, 348, 364
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	256, 281
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	247, 310
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	79
CviAII	CATG	3 cut(s)	314, 341, 428
CviJI	RGCY	6 cut(s)	57, 200, 256, 281, 320, 339
CviKI_1	RGCY	6 cut(s)	57, 200, 256, 281, 320, 339
DdeI	CTNAG	4 cut(s)	49, 159, 192, 234
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	317, 344, 431
FatI	CATG	3 cut(s)	313, 340, 427
Fnu4HI	GCNGC	4 cut(s)	201, 318, 337, 353
FokI	GGATG	2 cut(s)	254, 317
Fsp4HI	GCNGC	4 cut(s)	201, 318, 337, 353
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	201, 318, 337, 353
HaeIII	GGCC	2 cut(s)	256, 281
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	317, 344, 431
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	32, 152
HphI	GGTGA	2 cut(s)	356, 389
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	31, 37, 52, 64, 195
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	2 cut(s)	74, 377
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	317, 352, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	49, 159, 192, 234
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	317, 344, 431
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	91, 208
LpnPI	CCDG	1 cut(s)	6
Lsp1109I	GCAGC	4 cut(s)	187, 329, 348, 364
LweI	GCATC	3 cut(s)	64, 135, 437
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	5 cut(s)	118, 121, 298, 311, 341
MluCI	AATT	4 cut(s)	4, 225, 290, 368
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	68, 201, 216, 246, 271, 295, 389
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	96, 293
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	3 cut(s)	317, 344, 431
NsbI	TGCGCA	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	317, 431
PceI	AGGCCT	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	32, 152
PkrI	GCNGC	4 cut(s)	202, 319, 338, 354
PstNI	CAGNNNCTG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	96, 293
SatI	GCNGC	4 cut(s)	201, 318, 337, 353
Sau3AI	GATC	1 cut(s)	439
SetI	ASST	6 cut(s)	18, 25, 96, 193, 202, 322
SfaNI	GCATC	3 cut(s)	64, 135, 437
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	4, 225, 290, 368
SseBI	AGGCCT	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	69, 372, 442
TasI	AATT	4 cut(s)	4, 225, 290, 368
TfiI	GAWTC	2 cut(s)	32, 152
Tru1I	TTAA	2 cut(s)	96, 293
Tru9I	TTAA	2 cut(s)	96, 293
TseI	GCWGC	4 cut(s)	200, 317, 336, 352
TspDTI	ATGAA	4 cut(s)	17, 158, 312, 438
XapI	RAATTY	2 cut(s)	225, 368
XceI	RCATGY	2 cut(s)	317, 431
XmnI	GAANNNNTTC	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.