Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

94565208 .. 94567928

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCATTGCCGAAACAATCTGGAACCAAGCGAAAACTGCATGCTGATGATAAAGGTGGGTCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCCGAGATTGCTCCATACCTTAACAACAAGAAGGAGACATTCTATAAACGCATCATTTGGGAAGTGATGAACAGAGATTCTGCTAAGGGAAAGAGCAGAAAACAAGCACGAAAACCCCAGAAAGCTGCTCCTCCAAACAAAGCTGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAACCATGCACTTGACTTTGATGAAGGCAGCCATGGTGATATGCAGCACTCAAATGTCAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTATGATGATGAGTTGGATAATGAACATGCACATAGTGAAGATGCTGAAGGCAGACAAGGCTATGAAGACGAAGATACATATTTTCCAAATGATGGTTATAATGAATATGGCTGTGAGGATGAGTATTGTTTTGACGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

192

Amino Acids

21.88

Weight (kDa)

4.74

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	258, 401
AcuI	CTGAAG	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	297, 319
AluBI	AGCT	2 cut(s)	233, 251
AluI	AGCT	2 cut(s)	233, 251
Alw26I	GTCTC	2 cut(s)	85, 137
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	287, 312
ApeKI	GCWGC	3 cut(s)	233, 369, 385
ApoI	RAATTY	2 cut(s)	258, 401
AsuHPI	GGTGA	2 cut(s)	389, 422
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	220, 381, 397
BccI	CCATC	3 cut(s)	265, 332, 521
BcoDI	GTCTC	2 cut(s)	85, 137
BisI	GCNGC	3 cut(s)	234, 370, 386
BlsI	GCNGC	3 cut(s)	235, 371, 387
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	97, 168, 466
BpiI	GAAGAC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	3 cut(s)	280, 343, 559
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	2 cut(s)	96, 258
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	220, 381, 397
BshFI	GGCC	2 cut(s)	289, 314
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	2 cut(s)	85, 137
BsnI	GGCC	2 cut(s)	289, 314
Bsp19I	CCATGG	1 cut(s)	373
BspANI	GGCC	2 cut(s)	289, 314
BspCNI	CTCAG	2 cut(s)	95, 259
BspLI	GGNNCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	82, 192, 267
BstDSI	CCRYGG	1 cut(s)	373
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	280, 343, 559
BstMAI	GTCTC	2 cut(s)	85, 137
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 116, 492
BstNSI	RCATGY	2 cut(s)	44, 464
BstPI	GGTNACC	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	220, 381, 397
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	289, 314
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	280, 343, 559
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	68
CviAII	CATG	4 cut(s)	41, 347, 374, 461
CviJI	RGCY	8 cut(s)	90, 233, 251, 289, 314, 372, 495, 546
CviKI_1	RGCY	8 cut(s)	90, 233, 251, 289, 314, 372, 495, 546
DdeI	CTNAG	3 cut(s)	82, 192, 267
DraIII	CACNNNGTG	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	501
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	44, 350, 377, 464
FatI	CATG	4 cut(s)	40, 346, 373, 460
Fnu4HI	GCNGC	3 cut(s)	234, 370, 386
FokI	GGATG	3 cut(s)	287, 350, 566
Fsp4HI	GCNGC	3 cut(s)	234, 370, 386
GluI	GCNGC	3 cut(s)	234, 370, 386
HaeIII	GGCC	2 cut(s)	289, 314
Hin1II	CATG	4 cut(s)	44, 350, 377, 464
HinfI	GANTC	2 cut(s)	65, 185
HphI	GGTGA	2 cut(s)	389, 422
Hpy188I	TCNGA	5 cut(s)	64, 70, 85, 97, 578
Hpy188III	TCNNGA	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	107, 410
HpyAV	CCTTC	3 cut(s)	133, 359, 476
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	40, 350, 385, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 116, 492
HpyF3I	CTNAG	3 cut(s)	82, 192, 267
Hsp92II	CATG	4 cut(s)	44, 350, 377, 464
LmnI	GCTCC	2 cut(s)	124, 241
LpnPI	CCDG	2 cut(s)	6, 239
Lsp1109I	GCAGC	3 cut(s)	220, 381, 397
LweI	GCATC	3 cut(s)	97, 168, 466
MaeIII	GTNAC	1 cut(s)	341
MboII	GAAGA	5 cut(s)	331, 344, 485, 512, 518
MluCI	AATT	3 cut(s)	258, 323, 401
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	7 cut(s)	101, 249, 279, 304, 328, 422, 544
MseI	TTAA	2 cut(s)	129, 326
MslI	CAYNNNNRTG	2 cut(s)	45, 393
MwoI	GCNNNNNNNGC	3 cut(s)	37, 116, 492
NcoI	CCATGG	1 cut(s)	373
NlaIII	CATG	4 cut(s)	44, 350, 377, 464
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	2 cut(s)	44, 464
PaeI	GCATGC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	65, 185
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	235, 371, 387
PsiI	TTATAA	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	45, 393
SaqAI	TTAA	2 cut(s)	129, 326
SatI	GCNGC	3 cut(s)	234, 370, 386
SetI	ASST	4 cut(s)	58, 129, 235, 253
SfaNI	GCATC	3 cut(s)	97, 168, 466
SmiMI	CAYNNNNRTG	2 cut(s)	45, 393
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	258, 323, 401
SseBI	AGGCCT	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	102, 405
TasI	AATT	3 cut(s)	258, 323, 401
TfiI	GAWTC	2 cut(s)	65, 185
Tru1I	TTAA	2 cut(s)	129, 326
Tru9I	TTAA	2 cut(s)	129, 326
TseI	GCWGC	3 cut(s)	233, 369, 385
TspDTI	ATGAA	6 cut(s)	191, 345, 378, 471, 513, 552
Van91I	CCANNNNNTGG	1 cut(s)	527
XapI	RAATTY	2 cut(s)	258, 401
XceI	RCATGY	2 cut(s)	44, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.