Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

14285611 .. 14289430

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCATTGCCGAAACAATCTGGAACCAAGCGAAAACTGCATGCTGTCATTGATGTCTCAGAAAGCCTCTCTGACATAGACGATGCGCAGATTGCTCCATACCTTAACAACAAGAAGGAGACATTCTATAAAAGCATCATTTGGGAAGCGATGAACAGAGATTCTGCTAAGGGAAAGAGCAGAAAACAAGCACGAAAACCTCAGAAAGCTGCTCCTCCAAACAAAGCAGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAAACATGCAGCTGACTTTGAAGAAGGCAGCCATGGTGATATGCAGCACTCAAATGACAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTATGATGATGAGTTGGATAATGAACATGCATATAGTGAAGATGCTGAAGGCAGACAAGGCTATGAAGACGAAGATTTTCCAAATGATGGGTATAATGAATATGGCTGTGAGGATGAGTATTGTTTTGACGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

182

Amino Acids

20.76

Weight (kDa)

4.8

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	234, 377
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	273, 295, 338
AluBI	AGCT	2 cut(s)	209, 329
AluI	AGCT	2 cut(s)	209, 329
Alw26I	GTCTC	2 cut(s)	61, 113
AoxI	GGCC	2 cut(s)	263, 288
ApeKI	GCWGC	4 cut(s)	209, 326, 345, 361
ApoI	RAATTY	2 cut(s)	234, 377
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	365, 398
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	4 cut(s)	196, 338, 357, 373
BccI	CCATC	3 cut(s)	241, 308, 491
BcoDI	GTCTC	2 cut(s)	61, 113
BisI	GCNGC	4 cut(s)	210, 327, 346, 362
BlsI	GCNGC	4 cut(s)	211, 328, 347, 363
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	73, 144, 442
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	3 cut(s)	256, 319, 529
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	3 cut(s)	72, 215, 234
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	4 cut(s)	196, 338, 357, 373
BshFI	GGCC	2 cut(s)	265, 290
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	61, 113
BsnI	GGCC	2 cut(s)	265, 290
Bsp19I	CCATGG	1 cut(s)	349
BspANI	GGCC	2 cut(s)	265, 290
BspCNI	CTCAG	3 cut(s)	71, 214, 235
BspLI	GGNNCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	58, 168, 201, 243
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	256, 319, 529
BstHHI	GCGC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	61, 113
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 92, 468
BstNSI	RCATGY	3 cut(s)	44, 326, 440
BstV1I	GCAGC	4 cut(s)	196, 338, 357, 373
BstV2I	GAAGAC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	265, 290
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	256, 319, 529
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	88
CviAII	CATG	4 cut(s)	41, 323, 350, 437
CviJI	RGCY	8 cut(s)	66, 209, 265, 290, 329, 348, 471, 516
CviKI_1	RGCY	8 cut(s)	66, 209, 265, 290, 329, 348, 471, 516
DdeI	CTNAG	4 cut(s)	58, 168, 201, 243
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	44, 326, 353, 440
FatI	CATG	4 cut(s)	40, 322, 349, 436
Fnu4HI	GCNGC	4 cut(s)	210, 327, 346, 362
FokI	GGATG	3 cut(s)	263, 326, 536
Fsp4HI	GCNGC	4 cut(s)	210, 327, 346, 362
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	4 cut(s)	210, 327, 346, 362
HaeIII	GGCC	2 cut(s)	265, 290
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	4 cut(s)	44, 326, 353, 440
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	365, 398
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	61, 73, 204, 548
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	109, 335, 452
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	4 cut(s)	40, 326, 361, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 92, 468
HpyF3I	CTNAG	4 cut(s)	58, 168, 201, 243
Hsp92II	CATG	4 cut(s)	44, 326, 353, 440
HspAI	GCGC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	100, 217
LpnPI	CCDG	1 cut(s)	6
Lsp1109I	GCAGC	4 cut(s)	196, 338, 357, 373
LweI	GCATC	3 cut(s)	73, 144, 442
MboII	GAAGA	6 cut(s)	307, 320, 350, 461, 488, 494
MluCI	AATT	3 cut(s)	234, 299, 377
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	8 cut(s)	77, 210, 225, 255, 280, 304, 398, 514
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	2 cut(s)	105, 302
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	37, 92, 468
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	4 cut(s)	44, 326, 353, 440
NlaIV	GGNNCC	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	3 cut(s)	44, 326, 440
PaeI	GCATGC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	4 cut(s)	211, 328, 347, 363
PspN4I	GGNNCC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	105, 302
SatI	GCNGC	4 cut(s)	210, 327, 346, 362
SetI	ASST	4 cut(s)	105, 202, 211, 331
SfaNI	GCATC	3 cut(s)	73, 144, 442
SmiMI	CAYNNNNRTG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	234, 299, 377
SseBI	AGGCCT	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	234, 299, 377
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	105, 302
Tru9I	TTAA	2 cut(s)	105, 302
TseI	GCWGC	4 cut(s)	209, 326, 345, 361
TspDTI	ATGAA	5 cut(s)	167, 321, 447, 489, 522
Van91I	CCANNNNNTGG	1 cut(s)	497
XapI	RAATTY	2 cut(s)	234, 377
XceI	RCATGY	3 cut(s)	44, 326, 440
XmnI	GAANNNNTTC	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.