Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

26008530 .. 26011384

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTGGGTTCCACCATTCCAGTTCTAAAGGGGAAACTGAACTAGTCTACAAAAGAAGGCGGCAAGTTGCAATGTCAACTGCGGTTGGCGATGTCTCAGAAAGCCTCTCAGATATCGACGACTCCGAGGTTGCTGGGTACCTTAACAGCAAGGAGGCGGCGCGGTTTAAAAGATTCATTTGGGAAGTACTTAACAAGGACTACGATCAGGGAAAGAGTAGAAAACGAGCCAGAAAAGCCAAGAAAGCTGCACCTGCAGAAAAAACCGCCAAAGTTTCTACTGTGATAAATAACAAGGAGAGGCTGAGTTCGAAAATCGACTTTGATGCTTTGAAGAAATTAAATGAAAAGCTTCGACCTGGATTTGAAGAATGCAAAGAGTCTAATTGCGGCAGCGGTACGCAGCTGTCAAATCAGAAAAAGATTCATTTTGAAGTTAGTCATGATGAGGAGCTCGAACATGAAAATATGTACAGTGAAGAGGCTGAAGCCGGAGAAGGCTACGACGATGATACACATGTTGCAAATGACGAATATAATGGATACAATTATGATGAAGAATACAATTACGATGAGGGATATAATAACGACGATGGATATGATTTTGACGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

206

Amino Acids

23.47

Weight (kDa)

4.88

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	163
AciI	CCGC	7 cut(s)	61, 83, 158, 163, 267, 390, 396
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	4 cut(s)	140, 189, 400, 473
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	334, 368, 434
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	248, 352, 406, 454
AluI	AGCT	4 cut(s)	248, 352, 406, 454
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	248, 393, 403
Asp700I	GAANNNNTTC	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	235, 405, 415
BccI	CCATC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	6 cut(s)	62, 159, 249, 391, 394, 404
BlsI	GCNGC	6 cut(s)	63, 160, 250, 392, 395, 405
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	2 cut(s)	11, 140
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	3 cut(s)	111, 123, 296
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	235, 405, 415
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	492
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	7 cut(s)	61, 83, 158, 163, 267, 390, 396
BspCNI	CTCAG	3 cut(s)	110, 122, 297
BspFNI	CGCG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	11, 140
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	283, 476
Bst6I	CTCTTC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	97, 109, 305
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	235, 405, 415
BsuI	GTATCC	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	262
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	139, 188, 399, 472
CviAII	CATG	3 cut(s)	443, 461, 518
CviQI	GTAC	4 cut(s)	139, 188, 399, 472
DdeI	CTNAG	3 cut(s)	97, 109, 305
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	3 cut(s)	446, 464, 521
FaiI	YATR	8 cut(s)	444, 462, 470, 519, 537, 552, 582, 600
FatI	CATG	3 cut(s)	442, 460, 517
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	6 cut(s)	62, 159, 249, 391, 394, 404
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	6 cut(s)	62, 159, 249, 391, 394, 404
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	62, 159, 249, 391, 394, 404
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	446, 464, 521
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	122, 174, 380, 424
HpaII	CCGG	1 cut(s)	492
Hpy166II	GTNNAC	2 cut(s)	49, 78
Hpy188I	TCNGA	4 cut(s)	100, 112, 127, 417
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	49, 78
Hpy99I	CGWCG	3 cut(s)	122, 509, 593
HpyAV	CCTTC	2 cut(s)	51, 491
HpyCH4III	ACNGT	2 cut(s)	283, 476
HpyCH4V	TGCA	5 cut(s)	71, 251, 257, 375, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
HpyF3I	CTNAG	3 cut(s)	97, 109, 305
Hsp92II	CATG	3 cut(s)	446, 464, 521
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	8 cut(s)	34, 120, 194, 244, 267, 345, 372, 505
Lsp1109I	GCAGC	3 cut(s)	235, 405, 415
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	44
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	346, 380, 491, 569
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	5 cut(s)	338, 385, 547, 565, 611
MlyI	GAGTC	2 cut(s)	116, 389
MnlI	CCTC	7 cut(s)	116, 121, 148, 294, 442, 475, 568
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	4 cut(s)	144, 168, 192, 341
MspA1I	CMGCKG	2 cut(s)	396, 406
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 254
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	446, 464, 521
NlaIV	GGNNCC	2 cut(s)	11, 140
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	174, 424
PkrI	GCNGC	6 cut(s)	63, 160, 250, 392, 395, 405
PleI	GAGTC	2 cut(s)	116, 388
PpsI	GAGTC	2 cut(s)	116, 388
PscI	ACATGT	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	11, 140
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	4 cut(s)	140, 189, 400, 473
RsaNI	GTAC	4 cut(s)	139, 188, 399, 472
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	144, 168, 192, 341
SatI	GCNGC	6 cut(s)	62, 159, 249, 391, 394, 404
Sau3AI	GATC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	2 cut(s)	116, 389
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	132, 144, 250, 256, 354, 361, 408, 456
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	5 cut(s)	338, 385, 547, 565, 611
SsiI	CCGC	7 cut(s)	61, 83, 158, 163, 267, 390, 396
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	283, 476
TaqI	TCGA	5 cut(s)	117, 311, 318, 355, 456
TasI	AATT	5 cut(s)	338, 385, 547, 565, 611
TatI	WGTACW	2 cut(s)	187, 471
TauI	GCSGC	3 cut(s)	64, 161, 393
TfiI	GAWTC	2 cut(s)	174, 424
Tru1I	TTAA	4 cut(s)	144, 168, 192, 341
Tru9I	TTAA	4 cut(s)	144, 168, 192, 341
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	3 cut(s)	248, 393, 403
TspDTI	ATGAA	5 cut(s)	166, 360, 416, 477, 570
TspRI	CASTG	1 cut(s)	481
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.