RLG00000035249

Brf1-like TBP-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001593
Physical Location & Seq
Reverse (-)
63666184 .. 63667160
977 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035249

Sequence Viewer

Length: 633 bp
ATGGCATTGCCGAAACGATGTGGAACAAAGCGAAAACTACATGCTGATGATAAAGGTGCATCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCCAAGATTGCTCCATACCTTAACAAAAAGAAGGAGACATTCTATAAAAGCATCATTTGGGAAGCGATGAACAAAGATTCTGCTAAGGGAAAGGGCAGAAAACGAGTACGAAAACCCCAGAAAGCTGCTCCTCCAAACAAAGCAATCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCGAGTTCAAAAATCAACTATGAGGCCAGAGGCGGAACCAGGATTAAGAGGGTCTGGACCCCCCCAGACCGTCACACAGTTCTGCCACTGTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAACCATGCACCTGACTTTGAAGAAGGCAGACATGGTGATATGCAGCATTCAAATGACAAATTCGATGGTGAAGCACAAAGTTTTGGAGGCAGTTATGATGATGATTTGGATAATGAACATGCATATATTGAAGATGCTGAGGGCAAACAAGAAAACCTTTCTCAAACTCAAAGTATCTCAAAGTTTAGACCAAGAATCTATTTTCGAAGTTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRF1

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

8.73

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AcsI RAATTY 2 cut(s) 258, 473
AfaI GTAC 1 cut(s) 216
AgsI TTSAA 5 cut(s) 297, 391, 434, 465, 545
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 2 cut(s) 85, 137
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 3 cut(s) 287, 312, 384
ApeKI GCWGC 2 cut(s) 233, 457
ApoI RAATTY 2 cut(s) 258, 473
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 461, 494
AsuII TTCGAA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 220, 469
BccI CCATC 3 cut(s) 265, 404, 473
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 85, 137
BisI GCNGC 2 cut(s) 234, 458
BlsI GCNGC 2 cut(s) 235, 459
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 325, 347
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 68, 97, 168, 538
Bpu10I CCTNAGC 2 cut(s) 192, 552
Bpu14I TTCGAA 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 280, 415
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 3 cut(s) 96, 258, 543
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 220, 469
BshFI GGCC 3 cut(s) 289, 314, 386
BsmAI GTCTC 2 cut(s) 85, 137
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 3 cut(s) 289, 314, 386
Bsp119I TTCGAA 1 cut(s) 619
BspACI CCGC 1 cut(s) 321
BspANI GGCC 3 cut(s) 289, 314, 386
BspCNI CTCAG 3 cut(s) 95, 259, 544
BspLI GGNNCC 2 cut(s) 325, 347
BspT104I TTCGAA 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 359, 367, 378
Bst6I CTCTTC 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 82, 192, 267, 552
BstEII GGTNACC 1 cut(s) 413
BstF5I GGATG 2 cut(s) 280, 415
BstMAI GTCTC 2 cut(s) 85, 137
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 2 cut(s) 44, 536
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 220, 469
BsuRI GGCC 3 cut(s) 289, 314, 386
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 280, 415
BtsIMutI CAGTG 1 cut(s) 374
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 215
CviAII CATG 4 cut(s) 41, 419, 446, 533
CviJI RGCY 5 cut(s) 90, 233, 289, 314, 386
CviKI_1 RGCY 5 cut(s) 90, 233, 289, 314, 386
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 4 cut(s) 82, 192, 267, 552
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 326
EcoT22I ATGCAT 1 cut(s) 538
FaeI CATG 4 cut(s) 44, 422, 449, 536
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 4 cut(s) 40, 418, 445, 532
Fnu4HI GCNGC 2 cut(s) 234, 458
FokI GGATG 2 cut(s) 287, 422
Fsp4HI GCNGC 2 cut(s) 234, 458
GluI GCNGC 2 cut(s) 234, 458
HaeIII GGCC 3 cut(s) 289, 314, 386
Hin1II CATG 4 cut(s) 44, 422, 449, 536
HinfI GANTC 3 cut(s) 65, 185, 609
HphI GGTGA 2 cut(s) 461, 494
Hpy188I TCNGA 4 cut(s) 64, 70, 85, 97
Hpy188III TCNNGA 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 133, 431
HpyCH4III ACNGT 3 cut(s) 359, 367, 378
HpyCH4V TGCA 4 cut(s) 59, 422, 457, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 4 cut(s) 82, 192, 267, 552
Hsp92II CATG 4 cut(s) 44, 422, 449, 536
LmnI GCTCC 2 cut(s) 124, 241
LpnPI CCDG 7 cut(s) 239, 313, 328, 328, 340, 366, 438
Lsp1109I GCAGC 2 cut(s) 220, 469
LweI GCATC 4 cut(s) 68, 97, 168, 538
MaeIII GTNAC 3 cut(s) 359, 413, 623
MboII GAAGA 4 cut(s) 403, 416, 446, 557
MluCI AATT 3 cut(s) 258, 395, 473
Mph1103I ATGCAT 1 cut(s) 538
MseI TTAA 3 cut(s) 129, 333, 398
MslI CAYNNNNRTG 2 cut(s) 45, 465
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 44, 422, 449, 536
NlaIV GGNNCC 2 cut(s) 325, 347
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 2 cut(s) 44, 536
NspV TTCGAA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 386
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 3 cut(s) 65, 185, 609
PkrI GCNGC 2 cut(s) 235, 459
Psp6I CCWGG 1 cut(s) 326
PspEI GGTNACC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 325, 347
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 45, 465
SaqAI TTAA 3 cut(s) 129, 333, 398
SatI GCNGC 2 cut(s) 234, 458
Sau96I GGNCC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 328
SetI ASST 5 cut(s) 58, 129, 235, 427, 573
SfaNI GCATC 4 cut(s) 68, 97, 168, 538
SfuI TTCGAA 1 cut(s) 619
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 45, 465
Sse9I AATT 3 cut(s) 258, 395, 473
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 359, 367, 378
TaqI TCGA 3 cut(s) 102, 477, 619
TasI AATT 3 cut(s) 258, 395, 473
TfiI GAWTC 3 cut(s) 65, 185, 609
Tru1I TTAA 3 cut(s) 129, 333, 398
Tru9I TTAA 3 cut(s) 129, 333, 398
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 233, 457
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 191, 417, 543
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 2 cut(s) 258, 473
XceI RCATGY 2 cut(s) 44, 536
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.