Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

6885840 .. 6888827

Gene Structure 2988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCATTGCCAAAACGATCCGGAACAAAGCGAAAACTGCATGCTGATGTTAAAGATGCATCAGAATCTGAAAGTGATGATGTCTCAGAAAGCCTCTCTGACATTGACGATGCCGAGATTGCTCCATACCTTAACAACAAGAAGGAGGCATTCTATAAGCGCATCATTTGGGAAGCGATGAACAAAGATTTTGCTAAGGGAAAGAGCAGAAAACAAGCACGAACACCCAAGAAAGCTGCTCCTCCAAACAAGGCTGTGAAAACTTCTACTGAGATGGATGATAGAAAGAGGCCGAGTTCAAAAATCAACTACGAGGTCTTGAAGAAATTAAATGAAGAGGATGGTAACCATGGACCTGACTTTGAAGAAGGCAGCCATAGTGATATGCAGCACTCAAATGAGAAGTTAGAGAGTGAAGCACAAAGTTTCGGAGGCAGTTATGACGATGAGTTGGATAATGAAAATGCATATAGTGAAGAGGTTGAAGGCAGACAAGGCTATGAAGATGATGATACATGTTATCCAAATGATGATTATAATGAATATGGCTGTGACGACGACGAGTATGGTTTTGATGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

195

Amino Acids

22.11

Weight (kDa)

4.53

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRF1	PF07741	33 - 81	3.3e-07	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	20
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	4 cut(s)	300, 322, 365, 485
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	236, 372, 388
ApoI	RAATTY	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	223, 384, 400
BccI	CCATC	2 cut(s)	268, 335
BcoDI	GTCTC	1 cut(s)	88
BisI	GCNGC	3 cut(s)	237, 373, 389
BlsI	GCNGC	3 cut(s)	238, 374, 390
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmsI	GCATC	4 cut(s)	46, 68, 100, 171
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	5
BseAI	TCCGGA	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	283, 346
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	2 cut(s)	99, 261
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	223, 384, 400
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	349
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	98, 262
BspEI	TCCGGA	1 cut(s)	20
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	330, 471
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	85, 195, 270
BstDSI	CCRYGG	1 cut(s)	349
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	283, 346
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 119, 495
BstNSI	RCATGY	2 cut(s)	44, 519
BstPI	GGTNACC	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	223, 384, 400
BsuRI	GGCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	283, 346
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	353
CviAII	CATG	3 cut(s)	41, 350, 516
CviJI	RGCY	7 cut(s)	93, 236, 254, 292, 375, 498, 549
CviKI_1	RGCY	7 cut(s)	93, 236, 254, 292, 375, 498, 549
DdeI	CTNAG	3 cut(s)	85, 195, 270
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	330, 471
EarI	CTCTTC	2 cut(s)	330, 471
Eco130I	CCWWGG	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	2 cut(s)	61, 469
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	3 cut(s)	44, 353, 519
FatI	CATG	3 cut(s)	40, 349, 515
Fnu4HI	GCNGC	3 cut(s)	237, 373, 389
FokI	GGATG	2 cut(s)	290, 353
Fsp4HI	GCNGC	3 cut(s)	237, 373, 389
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	237, 373, 389
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	44, 353, 519
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	6 cut(s)	64, 70, 88, 100, 431, 584
Hpy188III	TCNNGA	2 cut(s)	21, 319
Hpy99I	CGWCG	2 cut(s)	560, 563
HpyAV	CCTTC	3 cut(s)	136, 362, 479
HpyCH4V	TGCA	4 cut(s)	40, 59, 388, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 119, 495
HpyF3I	CTNAG	3 cut(s)	85, 195, 270
Hsp92II	CATG	3 cut(s)	44, 353, 519
HspAI	GCGC	1 cut(s)	160
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	127, 244
LpnPI	CCDG	2 cut(s)	34, 369
Lsp1109I	GCAGC	3 cut(s)	223, 384, 400
LweI	GCATC	4 cut(s)	46, 68, 100, 171
MaeIII	GTNAC	2 cut(s)	344, 551
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	5 cut(s)	334, 347, 377, 488, 515
MluCI	AATT	2 cut(s)	326, 578
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	104, 139, 252, 282, 307, 331, 425, 472
Mph1103I	ATGCAT	2 cut(s)	61, 469
MroI	TCCGGA	1 cut(s)	20
MseI	TTAA	3 cut(s)	51, 132, 329
MslI	CAYNNNNRTG	2 cut(s)	45, 396
MspI	CCGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	37, 119, 495
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	44, 353, 519
NmeAIII	GCCGAG	2 cut(s)	139, 318
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	2 cut(s)	61, 469
NspI	RCATGY	2 cut(s)	44, 519
PaeI	GCATGC	1 cut(s)	44
PciI	ACATGT	1 cut(s)	515
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	238, 374, 390
PscI	ACATGT	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	45, 396
SaqAI	TTAA	3 cut(s)	51, 132, 329
SatI	GCNGC	3 cut(s)	237, 373, 389
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	353
SetI	ASST	5 cut(s)	132, 238, 318, 358, 483
SfaNI	GCATC	4 cut(s)	46, 68, 100, 171
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	45, 396
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	2 cut(s)	326, 578
StyI	CCWWGG	1 cut(s)	349
TasI	AATT	2 cut(s)	326, 578
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	3 cut(s)	51, 132, 329
Tru9I	TTAA	3 cut(s)	51, 132, 329
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	236, 372, 388
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	5 cut(s)	194, 348, 474, 516, 555
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	2 cut(s)	44, 519
Zsp2I	ATGCAT	2 cut(s)	61, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.