Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

33548474 .. 33551751

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1239900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATAATAAGGAGAGGCTGAGTTCAAAAATCGACTTCGATGCTTTGAAGAAATTAAATGAAGACCTTGGACCTGGATTTGAAGGAGGCACGGAGTCTAATTGTCCTGGATTTGAAGGAGGCACGGAGTCTAATTGTGGCAGTCGTGGTGATGAGCGGCTGTCGAATCAGAGAAGGAATAGTTTTGAAGGCAGTCATGATGAGGAGCTCGAACGTGAAAATACATACAGTGAAGAGGTTGAAGCCGGAAAAAGCTATGAAGATGATACATATGTTGCAAACGACGAATATAGCAGGTACAATTATGATGAAGAATGCAATTACAACGAGGGATACAATAACGATGATGGATACGATTTTGACGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

4.09

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	6 cut(s)	27, 49, 83, 116, 188, 242
AjnI	CCWGG	2 cut(s)	73, 106
AluBI	AGCT	2 cut(s)	208, 255
AluI	AGCT	2 cut(s)	208, 255
Alw21I	GWGCWC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	2 cut(s)	75, 108
BciVI	GTATCC	2 cut(s)	326, 344
BfuAI	ACCTGC	1 cut(s)	285
BfuI	GTATCC	2 cut(s)	326, 344
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	75, 108
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	75, 108
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	75, 108
BseDI	CCNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	75, 108
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	75, 108
BstSCI	CCNGG	2 cut(s)	73, 106
BstV2I	GAAGAC	1 cut(s)	69
BsuI	GTATCC	2 cut(s)	326, 344
BtsIMutI	CAGTG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	5 cut(s)	19, 160, 208, 245, 255
CviKI_1	RGCY	5 cut(s)	19, 160, 208, 245, 255
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	73, 106
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	200
FaiI	YATR	8 cut(s)	198, 226, 258, 271, 273, 291, 306, 370
FatI	CATG	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	3 cut(s)	95, 128, 166
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	77, 110, 168, 182
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	278, 318
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	60, 87, 93, 120, 259, 280
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	157
MboII	GAAGA	5 cut(s)	61, 74, 245, 272, 323
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	5 cut(s)	53, 100, 133, 301, 319
MlyI	GAGTC	2 cut(s)	104, 137
MnlI	CCTC	6 cut(s)	9, 80, 113, 196, 229, 322
MseI	TTAA	1 cut(s)	56
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	75, 108
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	75, 108
NdeI	CATATG	1 cut(s)	271
NlaIII	CATG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	166
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	2 cut(s)	103, 136
PpsI	GAGTC	2 cut(s)	103, 136
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	73, 106
PspGI	CCWGG	2 cut(s)	73, 106
PspPI	GGNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	158
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	2 cut(s)	104, 137
ScrFI	CCNGG	2 cut(s)	75, 108
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	7 cut(s)	69, 76, 210, 217, 240, 257, 299
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	5 cut(s)	53, 100, 133, 301, 319
SsiI	CCGC	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	73, 106
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	4 cut(s)	33, 39, 164, 210
TasI	AATT	5 cut(s)	53, 100, 133, 301, 319
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	17, 75, 273, 324
TspGWI	ACGGA	2 cut(s)	107, 140
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.