FvH4_2g39330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001593
Physical Location & Seq
Reverse (-)
28270074 .. 28270507
434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39330.t1

Sequence Viewer

Length: 393 bp
ATGAACAAGGATTATGTTGAGAGAAGAAGTACTAGAAAAAGAGGCAGAAAAGCCGAGGAAGCTGCTCCTCGGAGAAAGGCAGCCAAAACTTCTACCAAGTCGACGGATAACACTAAGAAATCGAGTGAAGGGGAGAGTAATCTGGCACCGGGAGTCAAAACAGGACGGAGTTCGAAAATCAACTATAGTGTTCTAAATGAAGAGGATTACAGGTTAGAAGAAGGTTTGGAATCTAATGAGAAAGTCATTAGTGCAGAGCACAGTGAAGAGGCTGAAGACGGACAAGGCTATGGCGACGATTATGAGTTTGAGCATGAAAACCAGTACAATGAAGAGGATGAGTCTTATTATGCAAATGATGATGATAATGGGCATGATGATGGATGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.87

Weight (kDa)

4.68

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 31, 326
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 62, 80
AsuC2I CCSGG 1 cut(s) 150
AsuII TTCGAA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 49, 92
BccI CCATC 2 cut(s) 374, 378
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 63, 81
BlsI GCNGC 2 cut(s) 64, 82
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 54, 68
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 54, 68
BseGI GGATG 2 cut(s) 343, 389
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 49, 92
BsgI GTGCAG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 54, 68
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 3 cut(s) 195, 261, 327
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 343, 389
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 49, 92
BstV2I GAAGAC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 343, 389
BtsIMutI CAGTG 1 cut(s) 268
Csp6I GTAC 2 cut(s) 30, 325
CviAII CATG 2 cut(s) 314, 374
CviJI RGCY 5 cut(s) 53, 62, 83, 272, 288
CviKI_1 RGCY 5 cut(s) 53, 62, 83, 272, 288
CviQI GTAC 2 cut(s) 30, 325
DdeI CTNAG 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 195, 261, 327
EarI CTCTTC 3 cut(s) 195, 261, 327
Eco57I CTGAAG 1 cut(s) 294
FaeI CATG 2 cut(s) 317, 377
FaiI YATR 7 cut(s) 15, 186, 291, 303, 315, 351, 375
FatI CATG 2 cut(s) 313, 373
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 63, 81
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 63, 81
FspBI CTAG 1 cut(s) 33
GluI GCNGC 2 cut(s) 63, 81
HapII CCGG 1 cut(s) 149
Hin1II CATG 2 cut(s) 317, 377
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 153, 230, 341
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 2 cut(s) 106, 299
HpyAV CCTTC 2 cut(s) 122, 215
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 254, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 317, 377
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 128, 147, 162, 196, 335
Lsp1109I GCAGC 2 cut(s) 49, 92
MaeI CTAG 1 cut(s) 33
MboII GAAGA 6 cut(s) 36, 212, 230, 278, 287, 344
MhlI GDGCHC 1 cut(s) 261
MlyI GAGTC 2 cut(s) 162, 350
MnlI CCTC 6 cut(s) 35, 49, 78, 196, 262, 328
MslI CAYNNNNRTG 1 cut(s) 378
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 150
NlaIII CATG 2 cut(s) 317, 377
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 79
NspV TTCGAA 1 cut(s) 173
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 64, 82
PleI GAGTC 2 cut(s) 161, 349
PpsI GAGTC 2 cut(s) 161, 349
PspN4I GGNNCC 1 cut(s) 147
RsaI GTAC 2 cut(s) 31, 326
RsaNI GTAC 2 cut(s) 30, 325
RseI CAYNNNNRTG 1 cut(s) 378
SalI GTCGAC 1 cut(s) 100
SatI GCNGC 2 cut(s) 63, 81
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 2 cut(s) 162, 350
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 261
SetI ASST 3 cut(s) 64, 215, 226
SfcI CTRYAG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 378
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 3 cut(s) 101, 122, 173
TatI WGTACW 2 cut(s) 29, 324
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 268
TseI GCWGC 2 cut(s) 62, 80
TspDTI ATGAA 4 cut(s) 17, 213, 330, 345
TspGWI ACGGA 3 cut(s) 119, 181, 294
TspRI CASTG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.