Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

23035879 .. 23038598

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCAACAGCGGATGGCCATGTCTCAGAAAGCCTCTCTGATATCGACGACTCCGAGGTTGCTGGGTACCTTAACAGCAAGGAGGCGGCGCGGTTTAAAAGAATCATTTGGGAAGTACTCAACAAGGACTACGATCAGGGAAAGAGTAGAAAACGAGCCAGAAAAGCCAAGAAAGCTGCACCTCAAGAAAAAGCCACCAAAGTTTCTACTGGGATGAATAAAGAGTTTTTTTTTTTCTTGCTGAGGCTGAGTTCAAAAATCGACTTCGATGCTTTGAAGAAATTAAATGAAGACCTTGGACCTGGATTTGAAGGAGGCACGGAGTCTAATTGTGGCAGTCGTCGTGATGAGCAGCTGTCGAATCAGAGGAGGAATAGTTTTGAAGGCAGTCATGATGAGGAGCTCGAACGTGAAAATACATACAGTAAAGAGGTTGAAGCCGGAAAAGGCGATGAAGATGATACATATGTTGCAAGCGACGAATATAGCAGGTACAATTATGATGAAGAATGCAATTACGAGGAGGGATACGATTTTGACGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

183

Amino Acids

20.86

Weight (kDa)

4.69

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	1 cut(s)	91
AciI	CCGC	3 cut(s)	11, 86, 91
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	3 cut(s)	68, 117, 494
AgsI	TTSAA	5 cut(s)	255, 277, 311, 383, 437
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	176, 355, 403
AluI	AGCT	3 cut(s)	176, 355, 403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	176, 352
Asp718I	GGTACC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	163, 364
BccI	CCATC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	480
BfuI	GTATCC	1 cut(s)	521
BisI	GCNGC	3 cut(s)	87, 177, 353
BlsI	GCNGC	3 cut(s)	88, 178, 354
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	54, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	54, 295
BseGI	GGATG	2 cut(s)	19, 219
BseMII	CTCAG	3 cut(s)	39, 233, 239
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	3 cut(s)	382, 413, 536
BseXI	GCAGC	2 cut(s)	163, 364
BseYI	CCCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	3 cut(s)	11, 86, 91
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	3 cut(s)	38, 234, 240
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	54, 295
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	25, 242, 248
BstF5I	GGATG	2 cut(s)	19, 219
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	163, 364
BstV2I	GAAGAC	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	19, 219
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	475
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	67, 116, 493
CviAII	CATG	2 cut(s)	20, 392
CviQI	GTAC	3 cut(s)	67, 116, 493
DdeI	CTNAG	3 cut(s)	25, 242, 248
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	23, 395
FaiI	YATR	8 cut(s)	21, 393, 421, 466, 468, 486, 501, 547
FatI	CATG	2 cut(s)	19, 391
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	87, 177, 353
FokI	GGATG	2 cut(s)	26, 226
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	3 cut(s)	87, 177, 353
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	87, 177, 353
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	23, 395
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	50, 102, 323, 361
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	28, 40, 55, 366
Hpy188III	TCNNGA	3 cut(s)	185, 344, 392
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	3 cut(s)	50, 345, 482
HpyAV	CCTTC	2 cut(s)	305, 377
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	179, 473, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpyF3I	CTNAG	3 cut(s)	25, 242, 248
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	2 cut(s)	23, 395
HspAI	GCGC	1 cut(s)	89
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	8 cut(s)	48, 122, 172, 195, 288, 315, 454, 475
Lsp1109I	GCAGC	2 cut(s)	163, 364
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	409
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	289, 302, 467, 518
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	4 cut(s)	281, 328, 496, 514
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	44, 332
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	3 cut(s)	72, 96, 284
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	11, 355
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	23, 395
NlaIV	GGNNCC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 537
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	102, 361
PkrI	GCNGC	3 cut(s)	88, 178, 354
PleI	GAGTC	2 cut(s)	44, 331
PpsI	GAGTC	2 cut(s)	44, 331
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	68, 117, 494
RsaNI	GTAC	3 cut(s)	67, 116, 493
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	72, 96, 284
SatI	GCNGC	3 cut(s)	87, 177, 353
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	299
ScaI	AGTACT	1 cut(s)	117
SchI	GAGTC	2 cut(s)	44, 332
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	281, 328, 496, 514
SsiI	CCGC	3 cut(s)	11, 86, 91
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	5 cut(s)	45, 261, 267, 359, 405
TasI	AATT	4 cut(s)	281, 328, 496, 514
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	102, 361
Tru1I	TTAA	3 cut(s)	72, 96, 284
Tru9I	TTAA	3 cut(s)	72, 96, 284
TseI	GCWGC	2 cut(s)	176, 352
TspDTI	ATGAA	4 cut(s)	230, 303, 468, 519
TspGWI	ACGGA	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.