Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

80946808 .. 80950060

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCGATCGGTCTCGCCATCCTTCGCAGGGCGGCGGCAGTTTGATGAAGTAGCCCTTGGTCTTCAACCCCTCGAACAAAGGCCACCCACTCCGGTCATGGGTGGTGCACGGGGGCTTCGGTGCTGCGCGGTGACGGTATCGACGGAGGAGACCGCGACGGCGGAGGAGCGATCAAGGAAGAAGAACAGGGTACCAGACAAAGCGGGCAGGAAAAAAGTTAAGGTTATGGCATTGCCAAAACAATCTGGAACCAAGCGAAAACTGCATGCTCATGATAAAGGTGGGTCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCCGAGATTGCTCCATACCTTAACAACAAGAAGGAGACATTCTATAAACGCATCATTTGGGAAGCGATGAACAGAGATTCTGCTAAGATATTCGTCAATGACTATCTTGCTTTCCTTTTACATTTCTTTGGTCCCCAAAATCCTGAAGGAAAGAGCAGAAAACAAGCACGAAAACCCCAGAAAGCTGCTCCTCCAAACAAAGCAGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAACCATGCACCTGACTTTGAAGAAGGCAGCCATGGTGATATGCAGCACTCAAATGACAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTGTGATGATGAGTTGGATAATGAACATGCATATAGTGAAGATGCTGAAGGCAGACAAGGCTATGAAGACGAAGATACATATTTTCCAAATGATGGTTATAATGAATATGGCTGTGAGGATGAGTATTGTTTTGACGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

287

Amino Acids

32.42

Weight (kDa)

5.28

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRF1	PF07741	107 - 205	4.9e-08	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccII	CGCG	2 cut(s)	128, 155
AciI	CCGC	6 cut(s)	31, 34, 128, 153, 161, 203
AcsI	RAATTY	2 cut(s)	543, 686
AcuI	CTGAAG	2 cut(s)	498, 786
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	27, 98, 812
AgsI	TTSAA	4 cut(s)	65, 582, 604, 647
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	1 cut(s)	518
AluI	AGCT	1 cut(s)	518
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	4 cut(s)	16, 143, 310, 362
Alw44I	GTGCAC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	3 cut(s)	80, 572, 597
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	123, 518, 654, 670
ApoI	RAATTY	2 cut(s)	543, 686
Asp718I	GGTACC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	142, 674, 707
AvaII	GGWCC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	53, 792
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	4 cut(s)	110, 505, 666, 682
BccI	CCATC	4 cut(s)	25, 550, 617, 806
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	4 cut(s)	16, 143, 310, 362
BisI	GCNGC	6 cut(s)	32, 35, 124, 519, 655, 671
BlsI	GCNGC	6 cut(s)	33, 36, 125, 520, 656, 672
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	3 cut(s)	192, 250, 466
BmsI	GCATC	3 cut(s)	322, 393, 751
BpiI	GAAGAC	2 cut(s)	53, 792
BsaI	GGTCTC	2 cut(s)	16, 143
BsaJI	CCNNGG	2 cut(s)	55, 658
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 98, 812
Bse3DI	GCAATG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	55, 658
BseGI	GGATG	4 cut(s)	17, 565, 628, 844
BseLI	CCNNNNNNNGG	3 cut(s)	27, 98, 812
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	321, 543
BseRI	GAGGAG	3 cut(s)	161, 179, 513
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	110, 505, 666, 682
Bsh1236I	CGCG	2 cut(s)	128, 155
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	82, 574, 599
BshNI	GGYRCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	3 cut(s)	27, 98, 812
BsmAI	GTCTC	4 cut(s)	16, 143, 310, 362
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	82, 574, 599
Bso31I	GGTCTC	2 cut(s)	16, 143
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	5, 170
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	6 cut(s)	31, 34, 128, 153, 161, 203
BspANI	GGCC	3 cut(s)	82, 574, 599
BspCNI	CTCAG	2 cut(s)	320, 544
BspFNI	CGCG	2 cut(s)	128, 155
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	192, 250, 466
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	2 cut(s)	16, 143
BsrDI	GCAATG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	55, 658
BssMI	GATC	2 cut(s)	5, 170
BssT1I	CCWWGG	2 cut(s)	55, 658
Bst4CI	ACNGT	2 cut(s)	136, 695
Bst6I	CTCTTC	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	205, 267
BstDEI	CTNAG	3 cut(s)	307, 417, 552
BstDSI	CCRYGG	1 cut(s)	658
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	4 cut(s)	17, 565, 628, 844
BstFNI	CGCG	2 cut(s)	128, 155
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	8, 173
BstMAI	GTCTC	4 cut(s)	16, 143, 310, 362
BstMBI	GATC	2 cut(s)	5, 170
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 341, 777
BstNSI	RCATGY	2 cut(s)	269, 749
BstPI	GGTNACC	1 cut(s)	626
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	2 cut(s)	128, 155
BstV1I	GCAGC	4 cut(s)	110, 505, 666, 682
BstV2I	GAAGAC	2 cut(s)	53, 792
BsuRI	GGCC	3 cut(s)	82, 574, 599
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	413
BtsCI	GGATG	4 cut(s)	17, 565, 628, 844
Cac8I	GCNNGC	2 cut(s)	205, 267
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	6 cut(s)	97, 266, 272, 632, 659, 746
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	307, 417, 552
DpnI	GATC	2 cut(s)	7, 172
DpnII	GATC	2 cut(s)	5, 170
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	55, 658
Eco147I	AGGCCT	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	16, 143
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	498, 786
Eco91I	GGTNACC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	55, 658
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	55, 658
FaeI	CATG	6 cut(s)	100, 269, 275, 635, 662, 749
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	6 cut(s)	96, 265, 271, 631, 658, 745
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	6 cut(s)	32, 35, 124, 519, 655, 671
FokI	GGATG	4 cut(s)	4, 572, 635, 851
Fsp4HI	GCNGC	6 cut(s)	32, 35, 124, 519, 655, 671
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	6 cut(s)	32, 35, 124, 519, 655, 671
HaeIII	GGCC	3 cut(s)	82, 574, 599
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	100, 269, 275, 635, 662, 749
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	290, 410
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	142, 674, 707
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	5 cut(s)	289, 295, 310, 322, 863
Hpy188III	TCNNGA	3 cut(s)	246, 272, 476
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	4 cut(s)	145, 160, 332, 695
HpyAV	CCTTC	5 cut(s)	31, 358, 473, 644, 761
HpyCH4III	ACNGT	2 cut(s)	136, 695
HpyCH4V	TGCA	5 cut(s)	107, 265, 635, 670, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 341, 777
HpyF3I	CTNAG	3 cut(s)	307, 417, 552
Hsp92II	CATG	6 cut(s)	100, 269, 275, 635, 662, 749
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	5, 170
LmnI	GCTCC	3 cut(s)	166, 349, 526
LpnPI	CCDG	9 cut(s)	12, 105, 172, 193, 207, 231, 489, 524, 651
Lsp1109I	GCAGC	4 cut(s)	110, 505, 666, 682
LweI	GCATC	3 cut(s)	322, 393, 751
MaeIII	GTNAC	2 cut(s)	130, 626
MalI	GATC	2 cut(s)	7, 172
MboI	GATC	2 cut(s)	5, 170
MboII	GAAGA	9 cut(s)	53, 190, 193, 616, 629, 659, 770, 797, 803
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	543, 608, 686
MmeI	TCCRAC	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	3 cut(s)	219, 354, 611
MslI	CAYNNNNRTG	2 cut(s)	270, 678
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	128, 155
MwoI	GCNNNNNNNGC	3 cut(s)	262, 341, 777
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	2 cut(s)	5, 170
NlaIII	CATG	6 cut(s)	100, 269, 275, 635, 662, 749
NlaIV	GGNNCC	3 cut(s)	192, 250, 466
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	2 cut(s)	269, 749
PaeI	GCATGC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	290, 410
PflMI	CCANNNNNTGG	1 cut(s)	812
PkrI	GCNGC	6 cut(s)	33, 36, 125, 520, 656, 672
Ple19I	CGATCG	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	819
PspEI	GGTNACC	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	192, 250, 466
PspPI	GGNCC	1 cut(s)	464
PstNI	CAGNNNCTG	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	270, 678
SaqAI	TTAA	3 cut(s)	219, 354, 611
SatI	GCNGC	6 cut(s)	32, 35, 124, 519, 655, 671
Sau3AI	GATC	2 cut(s)	5, 170
Sau96I	GGNCC	1 cut(s)	464
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	225, 283, 354, 520, 640
SfaNI	GCATC	3 cut(s)	322, 393, 751
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	2 cut(s)	270, 678
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	543, 608, 686
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	6 cut(s)	31, 34, 128, 153, 161, 203
StuI	AGGCCT	1 cut(s)	599
StyI	CCWWGG	2 cut(s)	55, 658
TaaI	ACNGT	2 cut(s)	136, 695
TaqI	TCGA	4 cut(s)	72, 140, 327, 690
TasI	AATT	3 cut(s)	543, 608, 686
TauI	GCSGC	2 cut(s)	34, 37
TfiI	GAWTC	2 cut(s)	290, 410
Tru1I	TTAA	3 cut(s)	219, 354, 611
Tru9I	TTAA	3 cut(s)	219, 354, 611
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	4 cut(s)	123, 518, 654, 670
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	6 cut(s)	60, 416, 630, 756, 798, 837
TspGWI	ACGGA	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	2 cut(s)	543, 686
XceI	RCATGY	2 cut(s)	269, 749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.