Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

14312243 .. 14315546

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCAAACTCTAATCCCCAACCTAATAACCTCAATCTCAGATCCACGTCTTTCATTTCCTCAACGGAATGGCTCCCTCCACCTCTACCCACACTTTCCTTGCCCTCTTCGCCTTTGCAGCCGGTGGGTTGCTTGCGTCATTGCTCCGCTTCGCCAAGTCACAGGTGCTGAACAATCCAAGGATATAGCCATCGCTGCCCAAGCTGAAGACTTTGGCTGGTTAGCAATTGGCGGCCTCCATGCTCCTCTTTACCACGAAGTGGTTTCGCCCTTGGTTGAACGCTGGTCTCTTAAGGAAGTAAAGGGACATGAACCTGAAATTCGATCCCAAAAACCCGAAACTGAAAACAGATCAAGTAAGAAGAGCAGGGTACCAGACAAAGCGGGCAGGAAGGGATTTAAGGTTATGGCATTGCCGAAACAATCTGGAACAAAGCGAAAACTGCATGCTGATGATAAAGGTGGGTCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCCGAGATTGCTCCATACCTTAACAACAAGAAGGAGACATTCTATAAAAGCATCATTTGGGAAGCGATGAACAGAGATTCTGCTAAGGGAAAGAGCAGAAAACAAGCACGAAAACCCCAGAAAGCTGCTCCTCCAAACAAAGCAGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAACCATGCACCTGACTTTGAAGAAGGCAGCCATGGTGATATGCAGCACTCAAATGACAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTATGATGATGAGTTGGATAATGAACATGCATATAGTGAAGATGCTGAAGGCAGACAAGGCTATGAAGACGAAGATACATATTTTCCAAATGATGGTTATAATGAATATGGCTGTGAGGATGAGTATTGTTTTGACGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

328

Amino Acids

36.92

Weight (kDa)

5.34

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
Acc65I	GGTACC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	370
AccB7I	CCANNNNNTGG	2 cut(s)	259, 932
AciI	CCGC	3 cut(s)	146, 231, 383
AclWI	GGATC	2 cut(s)	35, 318
AcsI	RAATTY	3 cut(s)	318, 663, 806
AcuI	CTGAAG	2 cut(s)	225, 906
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	259, 932
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	278, 702, 724, 767
AjiI	CACGTC	1 cut(s)	47
AluBI	AGCT	2 cut(s)	203, 638
AluI	AGCT	2 cut(s)	203, 638
Alw26I	GTCTC	3 cut(s)	291, 490, 542
AlwI	GGATC	2 cut(s)	35, 318
AlwNI	CAGNNNCTG	2 cut(s)	167, 473
AoxI	GGCC	3 cut(s)	232, 692, 717
ApeKI	GCWGC	5 cut(s)	117, 194, 638, 774, 790
ApoI	RAATTY	3 cut(s)	318, 663, 806
Asp718I	GGTACC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	794, 827
BanI	GGYRCC	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	213, 912
BbvI	GCAGC	5 cut(s)	129, 181, 625, 786, 802
BccI	CCATC	4 cut(s)	197, 670, 737, 926
BcoDI	GTCTC	3 cut(s)	291, 490, 542
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	6 cut(s)	118, 195, 232, 639, 775, 791
BlsI	GCNGC	6 cut(s)	119, 196, 233, 640, 776, 792
BmgBI	CACGTC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	73, 372
BmsI	GCATC	3 cut(s)	502, 573, 871
BpiI	GAAGAC	2 cut(s)	213, 912
Bpu10I	CCTNAGC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	177, 270, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 932
Bse118I	RCCGGY	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	138, 410
BseDI	CCNNGG	3 cut(s)	177, 270, 778
BseGI	GGATG	3 cut(s)	685, 748, 964
BseLI	CCNNNNNNNGG	2 cut(s)	259, 932
BseMI	GCAATG	2 cut(s)	138, 410
BseMII	CTCAG	3 cut(s)	51, 501, 663
BseRI	GAGGAG	2 cut(s)	234, 633
BseXI	GCAGC	5 cut(s)	129, 181, 625, 786, 802
BshFI	GGCC	3 cut(s)	234, 694, 719
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	259, 932
BsmAI	GTCTC	3 cut(s)	291, 490, 542
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	234, 694, 719
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	40, 323, 350
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	3 cut(s)	146, 231, 383
BspANI	GGCC	3 cut(s)	234, 694, 719
BspCNI	CTCAG	3 cut(s)	50, 500, 664
BspLI	GGNNCC	2 cut(s)	73, 372
BspPI	GGATC	2 cut(s)	35, 318
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	138, 410
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	177, 270, 778
BssMI	GATC	3 cut(s)	40, 323, 350
BssT1I	CCWWGG	3 cut(s)	177, 270, 778
Bst4CI	ACNGT	1 cut(s)	815
Bst6I	CTCTTC	3 cut(s)	111, 356, 732
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	133, 385, 447
BstDEI	CTNAG	4 cut(s)	37, 487, 597, 672
BstDSI	CCRYGG	1 cut(s)	778
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	3 cut(s)	685, 748, 964
BstKTI	GATC	3 cut(s)	43, 326, 353
BstMAI	GTCTC	3 cut(s)	291, 490, 542
BstMBI	GATC	3 cut(s)	40, 323, 350
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 117, 194, 200, 442, 521, 897
BstNSI	RCATGY	2 cut(s)	449, 869
BstPI	GGTNACC	1 cut(s)	746
BstV1I	GCAGC	5 cut(s)	129, 181, 625, 786, 802
BstV2I	GAAGAC	2 cut(s)	213, 912
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	234, 694, 719
BtgI	CCRYGG	1 cut(s)	778
BtgZI	GCGATG	2 cut(s)	175, 593
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	685, 748, 964
Cac8I	GCNNGC	3 cut(s)	133, 385, 447
CaiI	CAGNNNCTG	2 cut(s)	167, 473
Cfr10I	RCCGGY	1 cut(s)	120
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	6 cut(s)	239, 308, 446, 752, 779, 866
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	37, 487, 597, 672
DpnI	GATC	3 cut(s)	42, 325, 352
DpnII	GATC	3 cut(s)	40, 323, 350
DraIII	CACNNNGTG	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	111, 356, 732
EarI	CTCTTC	3 cut(s)	111, 356, 732
Eco130I	CCWWGG	3 cut(s)	177, 270, 778
Eco147I	AGGCCT	1 cut(s)	719
Eco31I	GGTCTC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	225, 906
Eco91I	GGTNACC	1 cut(s)	746
EcoO65I	GGTNACC	1 cut(s)	746
EcoT14I	CCWWGG	3 cut(s)	177, 270, 778
EcoT22I	ATGCAT	1 cut(s)	871
ErhI	CCWWGG	3 cut(s)	177, 270, 778
FaeI	CATG	6 cut(s)	242, 311, 449, 755, 782, 869
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	6 cut(s)	238, 307, 445, 751, 778, 865
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	6 cut(s)	118, 195, 232, 639, 775, 791
FokI	GGATG	3 cut(s)	692, 755, 971
Fsp4HI	GCNGC	6 cut(s)	118, 195, 232, 639, 775, 791
GluI	GCNGC	6 cut(s)	118, 195, 232, 639, 775, 791
HaeIII	GGCC	3 cut(s)	234, 694, 719
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	6 cut(s)	242, 311, 449, 755, 782, 869
HinfI	GANTC	2 cut(s)	470, 590
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	794, 827
Hpy188I	TCNGA	6 cut(s)	40, 469, 475, 490, 502, 983
Hpy188III	TCNNGA	1 cut(s)	426
Hpy99I	CGWCG	2 cut(s)	512, 815
HpyAV	CCTTC	4 cut(s)	385, 538, 764, 881
HpyCH4III	ACNGT	1 cut(s)	815
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	6 cut(s)	4, 117, 445, 755, 790, 869
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 117, 194, 200, 442, 521, 897
HpyF3I	CTNAG	4 cut(s)	37, 487, 597, 672
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	6 cut(s)	242, 311, 449, 755, 782, 869
KpnI	GGTACC	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	40, 323, 350
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	5 cut(s)	77, 148, 247, 529, 646
Lsp1109I	GCAGC	5 cut(s)	129, 181, 625, 786, 802
LweI	GCATC	3 cut(s)	502, 573, 871
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	2 cut(s)	157, 746
MalI	GATC	3 cut(s)	42, 325, 352
MboI	GATC	3 cut(s)	40, 323, 350
MboII	GAAGA	9 cut(s)	98, 218, 373, 736, 749, 779, 890, 917, 923
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	5 cut(s)	225, 318, 663, 728, 806
MmeI	TCCRAC	1 cut(s)	834
Mph1103I	ATGCAT	1 cut(s)	871
MseI	TTAA	4 cut(s)	291, 399, 534, 731
MslI	CAYNNNNRTG	2 cut(s)	450, 798
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	7 cut(s)	108, 117, 194, 200, 442, 521, 897
NcoI	CCATGG	1 cut(s)	778
NdeII	GATC	3 cut(s)	40, 323, 350
NlaIII	CATG	6 cut(s)	242, 311, 449, 755, 782, 869
NlaIV	GGNNCC	2 cut(s)	73, 372
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	871
NspI	RCATGY	2 cut(s)	449, 869
PaeI	GCATGC	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	470, 590
PflMI	CCANNNNNTGG	2 cut(s)	259, 932
PkrI	GCNGC	6 cut(s)	119, 196, 233, 640, 776, 792
PsiI	TTATAA	1 cut(s)	939
PspEI	GGTNACC	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	73, 372
PstNI	CAGNNNCTG	2 cut(s)	167, 473
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	450, 798
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	291, 399, 534, 731
SatI	GCNGC	6 cut(s)	118, 195, 232, 639, 775, 791
Sau3AI	GATC	3 cut(s)	40, 323, 350
SfaNI	GCATC	3 cut(s)	502, 573, 871
SmiMI	CAYNNNNRTG	2 cut(s)	450, 798
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	5 cut(s)	225, 318, 663, 728, 806
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	3 cut(s)	146, 231, 383
StuI	AGGCCT	1 cut(s)	719
StyI	CCWWGG	3 cut(s)	177, 270, 778
TaaI	ACNGT	1 cut(s)	815
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	322, 507, 810
TasI	AATT	5 cut(s)	225, 318, 663, 728, 806
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	470, 590
Tru1I	TTAA	4 cut(s)	291, 399, 534, 731
Tru9I	TTAA	4 cut(s)	291, 399, 534, 731
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	5 cut(s)	117, 194, 638, 774, 790
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	7 cut(s)	42, 324, 596, 750, 876, 918, 957
TspGWI	ACGGA	1 cut(s)	79
Van91I	CCANNNNNTGG	2 cut(s)	259, 932
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	3 cut(s)	318, 663, 806
XceI	RCATGY	2 cut(s)	449, 869
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.