Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009589.1

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Reverse (-)

57148 .. 60234

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009589.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggatgatagaaagaggccaagttcaaaaatcaactatgaggccttgaagaaattaaataaagaggatggtaaccatgcacctgactttgaagaaggcagacatggtgatatgcagcactcaaatgacaaattcgatggtgaagcacaaagttttggaggcagttatgatgatgatttggataatgaacatgcatatattgaagatgctgaaggcaaacaagaaaacttttctcaaactcaaatgattgctctactcaacctacaacgtcgggtattgattcggtgtcgcgaagagatcacaaccaaaacccttatccgtaaggcaagaagtccttttccggaaggcagagaaaagaaccttgtgatgaggttggtgctctcctcgtccacatcgtttgatcaagaagtcaggttaagggattctccgacgactgcaccctacagtgttggcacgcctacgcacacgctcaaaatagacagtttgcacccatactgcgcaaacccttaccagaaggtttacgttaactgcccaaaccacaagaactccagttacagaccgcactctcgtgccaactgtcttagtctttatgaagaacagcctaatgaggctggcggcgcatccaacactacccaagtggccgcgagtaaggggacaattgattcctttgtgcccattatcgccccggcgaatgagagcattgaggagcggctcgccatctttcagcagaataatgctgcatataatgagaggatggaaaaggccctcgcggaagagtgccgaaggctagatgaggtttcgatatcactgcaaaatcttgaagcaatttcgcgacagacgcagggacagtggcaagataagtacaagaaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

291

Amino Acids

33.06

Weight (kDa)

5.82

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	709
AccII	CGCG	4 cut(s)	291, 644, 770, 832
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	5 cut(s)	560, 615, 642, 709, 770
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	863
AgsI	TTSAA	5 cut(s)	27, 49, 92, 203, 821
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	1 cut(s)	873
AluI	AGCT	1 cut(s)	873
Alw21I	GWGCWC	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	4 cut(s)	17, 42, 639, 762
ApeKI	GCWGC	2 cut(s)	115, 737
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	500, 620
AspS9I	GGNCC	1 cut(s)	763
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	119, 152
BaeGI	GKGCMC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	127, 724
BccI	CCATC	4 cut(s)	62, 131, 725, 748
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	686
BfaI	CTAG	2 cut(s)	788, 874
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	5 cut(s)	116, 616, 642, 710, 738
BlsI	GCNGC	5 cut(s)	117, 617, 643, 711, 739
Bme1390I	CCNGG	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	763
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	2 cut(s)	196, 629
BpmI	CTGGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse1I	ACTGG	1 cut(s)	549
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	4 cut(s)	10, 73, 620, 759
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	2 cut(s)	373, 719
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	2 cut(s)	127, 724
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	4 cut(s)	291, 644, 770, 832
BshFI	GGCC	4 cut(s)	19, 44, 641, 764
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	341, 686
BslFI	GGGAC	2 cut(s)	667, 858
BsmFI	GGGAC	2 cut(s)	667, 858
BsnI	GGCC	4 cut(s)	19, 44, 641, 764
Bsp1286I	GDGCHC	2 cut(s)	381, 675
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	297, 400
Bsp68I	TCGCGA	2 cut(s)	291, 832
BspACI	CCGC	5 cut(s)	560, 615, 642, 709, 770
BspANI	GGCC	4 cut(s)	19, 44, 641, 764
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	4 cut(s)	291, 644, 770, 832
BsrBI	CCGCTC	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	2 cut(s)	297, 400
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst4CI	ACNGT	4 cut(s)	446, 482, 578, 849
Bst6I	CTCTTC	2 cut(s)	288, 768
BstC8I	GCNNGC	3 cut(s)	455, 613, 714
BstDEI	CTNAG	1 cut(s)	581
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	10, 73, 620, 759
BstFNI	CGCG	4 cut(s)	291, 644, 770, 832
BstHHI	GCGC	2 cut(s)	500, 620
BstKTI	GATC	2 cut(s)	300, 403
BstMBI	GATC	2 cut(s)	297, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 838
BstNSI	RCATGY	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	4 cut(s)	291, 644, 770, 832
BstV1I	GCAGC	2 cut(s)	127, 724
BsuRI	GGCC	4 cut(s)	19, 44, 641, 764
BtsCI	GGATG	4 cut(s)	10, 73, 620, 759
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	451, 806, 854
BtuMI	TCGCGA	2 cut(s)	291, 832
Cac8I	GCNNGC	3 cut(s)	455, 613, 714
CfoI	GCGC	2 cut(s)	500, 620
Cfr13I	GGNCC	1 cut(s)	763
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	862
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	3 cut(s)	77, 104, 191
CviJI	RGCY	9 cut(s)	19, 44, 601, 611, 641, 712, 764, 787, 873
CviKI_1	RGCY	9 cut(s)	19, 44, 601, 611, 641, 712, 764, 787, 873
CviQI	GTAC	1 cut(s)	862
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	2 cut(s)	299, 402
DpnII	GATC	2 cut(s)	297, 400
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	288, 768
EarI	CTCTTC	2 cut(s)	288, 768
Eco147I	AGGCCT	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	804
Eco57I	CTGAAG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	763
EcoO65I	GGTNACC	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	804
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	3 cut(s)	80, 107, 194
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FaqI	GGGAC	2 cut(s)	667, 858
FatI	CATG	3 cut(s)	76, 103, 190
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	5 cut(s)	116, 616, 642, 710, 738
FokI	GGATG	4 cut(s)	17, 80, 607, 766
Fsp4HI	GCNGC	5 cut(s)	116, 616, 642, 710, 738
FspBI	CTAG	2 cut(s)	788, 874
FspI	TGCGCA	1 cut(s)	499
GlaI	GCGC	2 cut(s)	499, 619
GluI	GCNGC	5 cut(s)	116, 616, 642, 710, 738
GsuI	CTGGAG	1 cut(s)	532
HaeIII	GGCC	4 cut(s)	19, 44, 641, 764
HapII	CCGG	2 cut(s)	341, 686
HgaI	GACGC	1 cut(s)	847
HhaI	GCGC	2 cut(s)	500, 620
Hin1II	CATG	3 cut(s)	80, 107, 194
Hin6I	GCGC	2 cut(s)	498, 618
HinP1I	GCGC	2 cut(s)	498, 618
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	3 cut(s)	280, 422, 662
HpaI	GTTAAC	1 cut(s)	526
HpaII	CCGG	2 cut(s)	341, 686
HphI	GGTGA	2 cut(s)	119, 152
Hpy166II	GTNNAC	3 cut(s)	390, 520, 526
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	5 cut(s)	290, 341, 404, 818, 831
Hpy8I	GTNNAC	3 cut(s)	390, 520, 526
Hpy99I	CGWCG	2 cut(s)	273, 433
HpyAV	CCTTC	5 cut(s)	89, 206, 338, 508, 777
HpyCH4III	ACNGT	4 cut(s)	446, 482, 578, 849
HpyCH4IV	ACGT	2 cut(s)	268, 522
HpyCH4V	TGCA	7 cut(s)	80, 115, 194, 437, 487, 740, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 838
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	2 cut(s)	268, 522
Hsp92II	CATG	3 cut(s)	80, 107, 194
HspAI	GCGC	2 cut(s)	498, 618
Kpn2I	TCCGGA	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	297, 400
LmnI	GCTCC	1 cut(s)	706
LpnPI	CCDG	8 cut(s)	96, 354, 397, 524, 562, 597, 699, 827
Lsp1109I	GCAGC	2 cut(s)	127, 724
LweI	GCATC	2 cut(s)	196, 629
MaeI	CTAG	2 cut(s)	788, 874
MaeII	ACGT	2 cut(s)	268, 522
MaeIII	GTNAC	2 cut(s)	71, 551
MalI	GATC	2 cut(s)	299, 402
MbiI	CCGCTC	1 cut(s)	709
MboI	GATC	2 cut(s)	297, 400
MboII	GAAGA	6 cut(s)	61, 104, 215, 305, 605, 785
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	381, 675
MluCI	AATT	4 cut(s)	53, 131, 657, 825
MmeI	TCCRAC	2 cut(s)	452, 648
Mph1103I	ATGCAT	1 cut(s)	196
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	3 cut(s)	56, 416, 525
MslI	CAYNNNNRTG	2 cut(s)	123, 567
MspI	CCGG	2 cut(s)	341, 686
MspR9I	CCNGG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	657
MvnI	CGCG	4 cut(s)	291, 644, 770, 832
MwoI	GCNNNNNNNGC	2 cut(s)	617, 838
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	2 cut(s)	297, 400
NlaIII	CATG	3 cut(s)	80, 107, 194
NruI	TCGCGA	2 cut(s)	291, 832
NsbI	TGCGCA	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	280, 422, 662
PkrI	GCNGC	5 cut(s)	117, 617, 643, 711, 739
PspEI	GGTNACC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	763
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
RruI	TCGCGA	2 cut(s)	291, 832
RsaI	GTAC	1 cut(s)	863
RsaNI	GTAC	1 cut(s)	862
RseI	CAYNNNNRTG	2 cut(s)	123, 567
SaqAI	TTAA	3 cut(s)	56, 416, 525
SatI	GCNGC	5 cut(s)	116, 616, 642, 710, 738
Sau3AI	GATC	2 cut(s)	297, 400
Sau96I	GGNCC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	2 cut(s)	381, 675
SfaNI	GCATC	2 cut(s)	196, 629
SfcI	CTRYAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	123, 567
Sse9I	AATT	4 cut(s)	53, 131, 657, 825
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	5 cut(s)	560, 615, 642, 709, 770
SspMI	CTAG	2 cut(s)	788, 874
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	684
TaaI	ACNGT	4 cut(s)	446, 482, 578, 849
TaiI	ACGT	2 cut(s)	271, 525
TaqI	TCGA	2 cut(s)	135, 800
TasI	AATT	4 cut(s)	53, 131, 657, 825
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	3 cut(s)	618, 644, 712
TfiI	GAWTC	3 cut(s)	280, 422, 662
Tru1I	TTAA	3 cut(s)	56, 416, 525
Tru9I	TTAA	3 cut(s)	56, 416, 525
TscAI	CASTG	3 cut(s)	451, 813, 854
TseI	GCWGC	2 cut(s)	115, 737
TspDTI	ATGAA	2 cut(s)	201, 606
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	451, 813, 854
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	2 cut(s)	788, 874
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.