Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

13412436 .. 13420485

Gene Structure 8050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCTGCGAGGAGCGAAGTGCAGAGCATCAAGGATTAGAGAGTCGACTATTCGATCGAAACGGTGGGTCAGAATCTGAAAGTGATGTCTCAGAAAGCCTCTCTGACATCGACGATGCGCAGATTGCTCCATACCTTAACAACAAGAAGGAGACATTCTATAAAAGCATCATTTGGGAAGCGATGAACAGAGATTCTGCTAAGGGAAAGAGCAGAAAACAAGCACGAAAACCTCAGAAAGCTGCTCCTCCAAACAAAGCAGTCAAAATTTCTACTGAGATGGATGATAGAAAGAGGCCAAGTTCAAAAATCAACTATGAGGCCTTGAAGAAATTAAATGAAGAGGATGGTAAACATGCAGCTGACTTTGAAGAAGGCAGCCATGGTGATATGCAGCACTCAAATGACAAATTCGACGGTGAAGCACAAAGTTTTAGAGGCAGTTATGATGATGAGTTGGATAATGAACATGCATATAGTGAAGATGCTGAAGGCAGACAAGGCTATGAAGACGAAGATACATATTTTCCAAATGATGGTTATAATGAATATGGCTGTGAGGATGAGTATTGTTTTGACGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

195

Amino Acids

22.28

Weight (kDa)

4.53

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
Acc16I	TGCGCA	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	267, 410
AcuI	CTGAAG	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	3 cut(s)	306, 328, 371
AluBI	AGCT	3 cut(s)	6, 242, 362
AluI	AGCT	3 cut(s)	6, 242, 362
Alw26I	GTCTC	2 cut(s)	94, 146
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	296, 321
ApeKI	GCWGC	5 cut(s)	6, 242, 359, 378, 394
ApoI	RAATTY	2 cut(s)	267, 410
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	398, 431
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	229, 371, 390, 406
BccI	CCATC	3 cut(s)	274, 341, 530
BcoDI	GTCTC	2 cut(s)	94, 146
BisI	GCNGC	5 cut(s)	7, 243, 360, 379, 395
BlsI	GCNGC	5 cut(s)	8, 244, 361, 380, 396
BmsI	GCATC	4 cut(s)	37, 106, 177, 475
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	3 cut(s)	289, 352, 568
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	3 cut(s)	105, 248, 267
BseRI	GAGGAG	2 cut(s)	26, 237
BseXI	GCAGC	4 cut(s)	229, 371, 390, 406
BsgI	GTGCAG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	298, 323
BsiEI	CGRYCG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	94, 146
BsnI	GGCC	2 cut(s)	298, 323
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	2 cut(s)	298, 323
BspCNI	CTCAG	3 cut(s)	104, 247, 268
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	65, 419
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	91, 201, 234, 276
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	3 cut(s)	289, 352, 568
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	94, 146
BstMBI	GATC	1 cut(s)	55
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 501
BstNSI	RCATGY	2 cut(s)	359, 473
BstV1I	GCAGC	4 cut(s)	229, 371, 390, 406
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	298, 323
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	289, 352, 568
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	121
CviAII	CATG	3 cut(s)	356, 383, 470
CviJI	RGCY	9 cut(s)	6, 99, 242, 298, 323, 362, 381, 504, 555
CviKI_1	RGCY	9 cut(s)	6, 99, 242, 298, 323, 362, 381, 504, 555
DdeI	CTNAG	4 cut(s)	91, 201, 234, 276
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	359, 386, 473
FatI	CATG	3 cut(s)	355, 382, 469
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	7, 243, 360, 379, 395
FokI	GGATG	3 cut(s)	296, 359, 575
Fsp4HI	GCNGC	5 cut(s)	7, 243, 360, 379, 395
FspI	TGCGCA	1 cut(s)	120
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	5 cut(s)	7, 243, 360, 379, 395
HaeIII	GGCC	2 cut(s)	298, 323
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	359, 386, 473
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	3 cut(s)	43, 74, 194
HphI	GGTGA	2 cut(s)	398, 431
Hpy166II	GTNNAC	2 cut(s)	47, 353
Hpy188I	TCNGA	6 cut(s)	73, 79, 94, 106, 237, 587
Hpy8I	GTNNAC	2 cut(s)	47, 353
Hpy99I	CGWCG	2 cut(s)	116, 419
HpyAV	CCTTC	3 cut(s)	142, 368, 485
HpyCH4III	ACNGT	2 cut(s)	65, 419
HpyCH4V	TGCA	4 cut(s)	23, 359, 394, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 501
HpyF3I	CTNAG	4 cut(s)	91, 201, 234, 276
Hsp92II	CATG	3 cut(s)	359, 386, 473
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	3 cut(s)	13, 133, 250
Lsp1109I	GCAGC	4 cut(s)	229, 371, 390, 406
LweI	GCATC	4 cut(s)	37, 106, 177, 475
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	6 cut(s)	340, 353, 383, 494, 521, 527
MluCI	AATT	3 cut(s)	267, 332, 410
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	4, 110, 243, 258, 288, 313, 337, 431, 553
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	2 cut(s)	138, 335
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	125, 501
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	359, 386, 473
NsbI	TGCGCA	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	2 cut(s)	359, 473
PceI	AGGCCT	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	74, 194
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	5 cut(s)	8, 244, 361, 380, 396
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	138, 335
SatI	GCNGC	5 cut(s)	7, 243, 360, 379, 395
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	52
SetI	ASST	5 cut(s)	8, 138, 235, 244, 364
SfaNI	GCATC	4 cut(s)	37, 106, 177, 475
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	267, 332, 410
SseBI	AGGCCT	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	65, 419
TaqI	TCGA	5 cut(s)	46, 54, 58, 111, 414
TasI	AATT	3 cut(s)	267, 332, 410
TfiI	GAWTC	2 cut(s)	74, 194
Tru1I	TTAA	2 cut(s)	138, 335
Tru9I	TTAA	2 cut(s)	138, 335
TseI	GCWGC	5 cut(s)	6, 242, 359, 378, 394
TspDTI	ATGAA	5 cut(s)	200, 354, 480, 522, 561
Van91I	CCANNNNNTGG	1 cut(s)	536
XapI	RAATTY	2 cut(s)	267, 410
XceI	RCATGY	2 cut(s)	359, 473
XmiI	GTMKAC	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.