Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043116.1

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

179 .. 763

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcattccgaaagcgatccaagtcgaggcaagagcagaaagctgatgagggtaatggttttgatgagggctcaagtacatcagactcggatagtagtgataatgtctcggaaagtctttctgatattgacgatgccgagatttctccatacctactaaccaagaaggaggcactgtataaaaccatcatctgggaagcaatgcacaaggattatgtcgagaaaagaagtactaggaaaagagccagaaaagccaaggaagctggtcctctgagaaaggcagccaaaacttctaccaagaaatcggatgaagggcatagtaatcttgcaccggaagtcaaaaaaggacggagttcaaaaatcaactataatgccataaatgaagaggattgcaggttggaagaaggtttggagtctaatgagaaagtcatcggtgcagagcacagtgaagaggctcaagacggacaaggctattatgatgataattatgggtctgagcatgaaaaccagtacaatgaagaggacgagtcttattatgcaaatgatgatggtgatgataacgggcacaatgatggatggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

194

Amino Acids

21.94

Weight (kDa)

4.77

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	79, 232, 512
AfiI	CCNNNNNNNGG	2 cut(s)	27, 192
AgsI	TTSAA	1 cut(s)	357
AluBI	AGCT	2 cut(s)	44, 263
AluI	AGCT	2 cut(s)	44, 263
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	194, 542, 566, 570
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	58, 441
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 192
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	313, 581
BseLI	CCNNNNNNNGG	2 cut(s)	27, 192
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	263, 486
BseNI	ACTGG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	27, 192
BsmAI	GTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	74, 444, 567
Bsp143I	GATC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	264, 487
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	177, 446
Bst6I	CTCTTC	3 cut(s)	378, 444, 513
BstDEI	CTNAG	2 cut(s)	272, 495
BstF5I	GGATG	2 cut(s)	313, 581
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 260
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	313, 581
BtsIMutI	CAGTG	2 cut(s)	173, 451
BveI	ACCTGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	78, 231, 511
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 455, 471
CviKI_1	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 455, 471
CviQI	GTAC	3 cut(s)	78, 231, 511
DdeI	CTNAG	2 cut(s)	272, 495
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	378, 444, 513
EarI	CTCTTC	3 cut(s)	378, 444, 513
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	503
FatI	CATG	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	282
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	3 cut(s)	86, 413, 527
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	563
Hpy188I	TCNGA	9 cut(s)	11, 85, 91, 112, 124, 273, 307, 496, 584
Hpy188III	TCNNGA	2 cut(s)	220, 458
HpyAV	CCTTC	3 cut(s)	160, 305, 398
HpyCH4III	ACNGT	2 cut(s)	177, 446
HpyCH4V	TGCA	5 cut(s)	205, 329, 393, 437, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 260
HpyF3I	CTNAG	2 cut(s)	272, 495
Hsp92II	CATG	1 cut(s)	503
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	178, 249, 259, 345, 379, 521
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	395, 413, 461, 530
MhlI	GDGCHC	3 cut(s)	74, 444, 567
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	80, 422, 536
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	21, 43, 61, 163, 279, 379, 445, 514
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	251, 260
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	503
NmeAIII	GCCGAG	1 cut(s)	163
PctI	GAATGC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	3 cut(s)	80, 421, 535
PpsI	GAGTC	3 cut(s)	80, 421, 535
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	3 cut(s)	79, 232, 512
RsaNI	GTAC	3 cut(s)	78, 231, 511
RseI	CAYNNNNRTG	1 cut(s)	570
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	3 cut(s)	80, 422, 536
SduI	GDGCHC	3 cut(s)	74, 444, 567
SetI	ASST	5 cut(s)	46, 156, 265, 398, 409
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	73, 456
SmoI	CTYRAG	2 cut(s)	73, 456
Sse9I	AATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	177, 446
TaqI	TCGA	2 cut(s)	26, 219
TasI	AATT	1 cut(s)	484
TatI	WGTACW	3 cut(s)	77, 230, 510
TscAI	CASTG	2 cut(s)	180, 451
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	324, 396, 516, 531
TspGWI	ACGGA	2 cut(s)	364, 477
TspRI	CASTG	2 cut(s)	180, 451
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	266
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.