Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001593

Physical Location & Seq

Genomic Coordinates Forward (+)

5365420 .. 5369102

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G104400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCACCTGCGGATGGTGATGTCTCAGAAAGCCTCTCTGATATTGACGATGCAGAGGTTGTTGGCTACCTTAACAGCAAGCAGGCGGCACTGTTTAAAAGAATGATTTGGGAAGCAATGAACAAGGACTATGATAAGGAAAAGAGTAGAAAACGCGCTAGAATGGCCAAGAAAGCTACTCGTGCTAAAAAGCCAGAAAAGGCTGTCAAAGTTTCTACTGTGATGGATACTAAGAATAGGCTGAGTTCAAAAATCAACTATGATGCTTTGGATAAATTAAATGAAGAGCTTGGTTATGCACCTGCATTTGAAGAAGGCACAAAGTCTAATTGTGGCAATCCAGGTGATATGCAACTGTCAAATGAGAAGAACAATTTTGAAGGCAGTCATGATGATGATTTTGAGCATGAAAGTAATGGATACAGTGAAGAGGTTGAAGCCAGACAAGGCCATGATGATGATACATATGTTGCAAATGACCAATATAATGGATGCAACTATGATGACGAATACAATTATGATGAGGAATGCGATTTTGACGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1

Protein Analysis

183

Amino Acids

20.71

Weight (kDa)

4.48

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19550 AT4G19550
fragaria_vesca	FvH4_2g39330 FvH4_3g11660
malus_domestica	MD05G1260600.v1.1 MD10G1239900.v1.1
prunus_persica	Prupe.1G012300_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104100_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.4G104400_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.5G159600_v2.0.a1 Prupe.8G011600_v2.0.a1
pyrus_communis	pycom05g24430 pycom10g20030
rosa_chinensis	RchiOBHm_Chr5g0018721 RchiOBHm_Chr5g0018751
rosa_laevigata	RLG00000008065 RLG00000011233 RLG00000032390 RLG00000032402 RLG00000032406 RLG00000035249
rosa_multiflora	Rmu_sc0000563.1_g000004 Rmu_sc0001296.1_g000012 Rmu_sc0004438.1_g000003 Rmu_sc0009589.1_g000011 Rmu_sc0034934.1_g000007 Rmu_sc0043116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058970 Rroxscaffold_1G00059060 Rroxscaffold_1G00073820 Rroxscaffold_4G00297400 Rroxscaffold_7G00166540
rosa_rugosa	Rorug05G0046200 Rorug06G0308000
rosa_samantha	Rh3DG298000 Rh5CG148000 Rh5CG148300 Rh6DG420400
rosa_wichuraiana	Rw5G012160 Rw5G012190 Rw6G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	16, 310
Acc36I	ACCTGC	2 cut(s)	16, 310
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	11, 86
AcoI	YGGCCR	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	249, 311, 380, 437
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	176, 289
AluI	AGCT	2 cut(s)	176, 289
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	165, 448
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	29, 356
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BalI	TGGCCA	1 cut(s)	167
BauI	CACGAG	1 cut(s)	180
BccI	CCATC	2 cut(s)	8, 217
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	2 cut(s)	220, 413
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	16, 310
BfuI	GTATCC	2 cut(s)	220, 413
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	40, 253, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	19, 497
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	39, 233
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	167, 450
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	167, 450
BspACI	CCGC	2 cut(s)	11, 86
BspANI	GGCC	2 cut(s)	167, 450
BspCNI	CTCAG	2 cut(s)	38, 234
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	388
BspMI	ACCTGC	2 cut(s)	16, 310
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	93, 220, 357, 425
Bst6I	CTCTTC	2 cut(s)	279, 423
BstC8I	GCNNGC	2 cut(s)	80, 84
BstDEI	CTNAG	3 cut(s)	25, 231, 242
BstF5I	GGATG	2 cut(s)	19, 497
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	488
BsuI	GTATCC	2 cut(s)	220, 413
BsuRI	GGCC	2 cut(s)	167, 450
BtsCI	GGATG	2 cut(s)	19, 497
BtsIMutI	CAGTG	2 cut(s)	89, 430
BveI	ACCTGC	2 cut(s)	16, 310
Cac8I	GCNNGC	2 cut(s)	80, 84
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	158
CviAII	CATG	3 cut(s)	389, 407, 452
DdeI	CTNAG	3 cut(s)	25, 231, 242
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	279, 423
EarI	CTCTTC	2 cut(s)	279, 423
EcoRII	CCWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	392, 410, 455
FatI	CATG	3 cut(s)	388, 406, 451
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	26, 504
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	167, 450
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	392, 410, 455
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HphI	GGTGA	2 cut(s)	29, 356
Hpy188I	TCNGA	2 cut(s)	28, 40
Hpy188III	TCNNGA	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	308, 374
HpyCH4III	ACNGT	4 cut(s)	93, 220, 357, 425
HpyCH4V	TGCA	6 cut(s)	53, 299, 305, 352, 473, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
HpyF3I	CTNAG	3 cut(s)	25, 231, 242
Hsp92II	CATG	3 cut(s)	392, 410, 455
HspAI	GCGC	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	21, 68, 207, 315, 327, 354, 454
LweI	GCATC	3 cut(s)	40, 253, 482
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	296, 323, 379, 440
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	5 cut(s)	275, 328, 373, 514, 542
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	4 cut(s)	44, 49, 424, 517
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	72, 96, 278
MslI	CAYNNNNRTG	2 cut(s)	393, 456
Msp20I	TGGCCA	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 182
NdeI	CATATG	1 cut(s)	466
NlaIII	CATG	3 cut(s)	392, 410, 455
NmuCI	GTSAC	1 cut(s)	3
PagI	TCATGA	1 cut(s)	388
PaqCI	CACCTGC	2 cut(s)	16, 310
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	393, 456
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	72, 96, 278
SatI	GCNGC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	8 cut(s)	10, 60, 72, 178, 291, 304, 346, 435
SfaNI	GCATC	3 cut(s)	40, 253, 482
SmiMI	CAYNNNNRTG	2 cut(s)	393, 456
Sse9I	AATT	5 cut(s)	275, 328, 373, 514, 542
SsiI	CCGC	2 cut(s)	11, 86
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	93, 220, 357, 425
TasI	AATT	5 cut(s)	275, 328, 373, 514, 542
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	72, 96, 278
Tru9I	TTAA	3 cut(s)	72, 96, 278
TscAI	CASTG	2 cut(s)	96, 430
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	134, 297, 423
TspRI	CASTG	2 cut(s)	96, 430
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.