Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

12830915 .. 12835949

Gene Structure 5035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGACAACAGTATTCACGTGAAGCGAGAGATTCAACTTCCATCTACTTCTCCGGCTGGCTTTCCGGGGAGAGAATCTGTAACTGTAGTCGATCTCTGTAGTAGTGATGACGACTCCGACATTGGAGAAGTCGCCGGTGGATTAGAGAAAGTAGGAAACAACTTCGTCGGTCTGAAGAGAGGACGAGATACTTTTGGAGGTTCTTCCGAAGTGGATAGGAATAATGTGAAGAAGGTAACAACACTTGCTGAGTTAGGAGTTGGGTTACCGGAAGGATTCGGCCAATCGAATCCACCGGAAAGTTTGACGCATCCTATTCCTGCGAATCCGTGTAATGTCTTCAGGCCTGTACCGCCGCCGCCGCCGCCACCGTATGCCGGCACGTCTGGGAAGATTGGCGGTTGTAAGCAGTTTTGGAAAGCTGGAGATTATGAAGGAGCAGCTGGCGATAACTGGGATCTTTCTTCAGGTGGTTTTGATCATGTAAGAGTCCATCCAAAGTTTTTGCATTCTAATGCAACTAGTCACAAATGGGCTCTTGGAGCTTTTGCAGAGCTTTTGGACAATGCCTTGGATGAGGTTGCCAGTGGAGCTACTTATGTTAAAGTAGACATGCTAGAAAACAACAAAGGGGGAAACAGGATGTTATTAATTGAAGATAACGGGGGTGGGATGGACCCTGAAAAAATGCGACAATGCATGTCTCTAGGATACTCTGCAAAAAGCAAACTTGCAAACACCATTGGACAATATGGCAATGGGTTTAAGACTAGTACAATGAGACTTGGAGCTGATGTTATTGTTTTCTCGCGTTGCCCTGGGAAAGATGGAAAGAGCTCTACGCAGAGCATCGGACTCCTATCATATACATTTCTAAGGAGCACAGGAAAGGAGGACATTGTTGTTCCCATGCTTGACTATGAAAGAAGGGACCCTGAATGGAGTAAAATAATCCGGTCTTCCACGAGAGATTGGGATAAAAATGTGGAAACAATAATTCAATGGTCGCCATTCTCTAGTGAAGAAGATCTTCTTCATCAGTTTGATCTGATGAAGGATCGTGGCACACGGATAATCATATATAACCTGTGGGAAGATGATCAAGGGATGTTAGAACTCGATTTTGATGCTGATCCTTATGATATCCAACTAAGAGGTGTCAATCGGGAAGAAAGAAACATCAAAATGGCTTCTCAGTTTCCTAATTCTAGGCACTTCCTGACATACAAACACTCACTAAGGAGTTATGTATCAATCCTCTACCTAAGAATTCCACCTGGGTTTCGTATCATTCTACGGGGAATAGATGTCGAGCACCACAGCGTAGTGAATGACATGATGCAGACTGAGCAGATCACATATCGACCACAGTCTGAATCATATGGAGTTGTGACAAATATGTCTGCCATTGTAATTATTGGATTTGTGAAGGACGCAAAACATCATGTTGATGTTCAAGGCTTTAATGTCTACCACAAAAATCGGCTCATCAAGCCATTTTGGAGGATATGGAATGCAACAGGCAGTGATGGTCGTGGGGTCATAGGTGTTCTGGAAGCTAATTTTGTTGAGCCTGCTCATGATAAGCAAGGGTTTGAGCGTACAACAGTTCTCGCTAGACTTGAGTCACGGCTAGTTCAAATGCAGAAGACTTACTGGAGTACGAACTGTCACAAAATTGGCTATGCGCCCAGGCGACGTGAAAAGTCTGCATATGGTTATGATAACAGAGACTCATCACCAGAAAATGATCGTGAGGGACCATCAAGCATCAAAACTCCTACTCCAGCTTCTGACAAGTTCTACTCAAGCTCATATCCAAATCATAATGGGGACAACGGTGTATCTGGGAAAGATGGTGCACGGTTGCAAGAGGAGCTGCGGCGTGAAAAGGAGCGTAGGAAGGCACTTGAAGTTGAGGTTCAATTATCAAGACAAAAAATAGAAGAAATGAAGAAAGAGCAAGAGAATCTGATTGAGATATTCTCAGAGGAAAGAGACCGACGTGATGGGGAGGAAGAAGTTTTGAGAAATAAGCTAGAGGAAGCGTCGAACACGATCGATGATCTGTTGAATAAGATAAAAAAGATGGAGGGATCTAAAGTCCCGAGCTGGAGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

707

Amino Acids

79.57

Weight (kDa)

6.19

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	181 - 300	8.2e-18	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	182 - 261	3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	411 - 553	1e-59	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1399
AccI	GTMKAC	2 cut(s)	609, 1470
AccII	CGCG	1 cut(s)	811
AciI	CCGC	7 cut(s)	353, 356, 359, 362, 365, 399, 1882
AclWI	GGATC	4 cut(s)	465, 1065, 1127, 2104
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	1269
AcuI	CTGAAG	3 cut(s)	194, 325, 450
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	4 cut(s)	351, 775, 1603, 1663
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	8 cut(s)	35, 656, 1001, 1457, 1640, 1913, 1925, 2074
AhlI	ACTAGT	2 cut(s)	521, 770
AjiI	CACGTC	3 cut(s)	384, 1700, 2006
AjnI	CCWGG	3 cut(s)	817, 1276, 1691
Alw21I	GWGCWC	4 cut(s)	839, 884, 1317, 1864
Alw26I	GTCTC	5 cut(s)	708, 775, 1725, 1992, 2110
Alw44I	GTGCAC	1 cut(s)	1860
AlwI	GGATC	4 cut(s)	465, 1065, 1127, 2104
AlwNI	CAGNNNCTG	1 cut(s)	1793
Ama87I	CYCGRG	1 cut(s)	2107
AoxI	GGCC	2 cut(s)	280, 344
ApaLI	GTGCAC	1 cut(s)	1860
ApeKI	GCWGC	2 cut(s)	440, 1879
ApoI	RAATTY	1 cut(s)	1269
AseI	ATTAAT	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	1 cut(s)	1690
AspS9I	GGNCC	3 cut(s)	676, 931, 1760
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	1731
AvaI	CYCGRG	1 cut(s)	2107
AvaII	GGWCC	3 cut(s)	676, 931, 1760
BaeGI	GKGCMC	1 cut(s)	1864
BanII	GRGCYC	2 cut(s)	538, 839
BauI	CACGAG	1 cut(s)	964
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	3 cut(s)	331, 951, 1655
Bbv12I	GWGCWC	4 cut(s)	839, 884, 1317, 1864
BbvI	GCAGC	2 cut(s)	452, 1866
BccI	CCATC	9 cut(s)	49, 501, 667, 821, 1523, 1771, 1850, 2003, 2083
BceAI	ACGGC	1 cut(s)	1646
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BciT130I	CCWGG	3 cut(s)	819, 1278, 1693
BciVI	GTATCC	1 cut(s)	704
BclI	TGATCA	2 cut(s)	478, 1099
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	5 cut(s)	708, 775, 1725, 1992, 2110
BcuI	ACTAGT	2 cut(s)	521, 770
BfaI	CTAG	9 cut(s)	522, 617, 707, 771, 1017, 1209, 1617, 1634, 2039
BfmI	CTRYAG	2 cut(s)	84, 97
BfuI	GTATCC	1 cut(s)	704
BglII	AGATCT	1 cut(s)	1027
BisI	GCNGC	7 cut(s)	356, 359, 362, 365, 441, 1880, 1883
BlsI	GCNGC	7 cut(s)	357, 360, 363, 366, 442, 1881, 1884
Bme1390I	CCNGG	4 cut(s)	66, 819, 1278, 1693
Bme18I	GGWCC	3 cut(s)	676, 931, 1760
BmeT110I	CYCGRG	1 cut(s)	2107
BmgBI	CACGTC	3 cut(s)	384, 1700, 2006
BmgT120I	GGNCC	3 cut(s)	676, 931, 1760
BmiI	GGNNCC	4 cut(s)	678, 932, 933, 1761
BmrFI	CCNGG	4 cut(s)	66, 819, 1278, 1693
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	5 cut(s)	319, 858, 1117, 1329, 1779
BmuI	ACTGGG	1 cut(s)	463
BoxI	GACNNNNGTC	2 cut(s)	1369, 1624
BpiI	GAAGAC	3 cut(s)	331, 951, 1655
BplI	GAGNNNNNCTC	2 cut(s)	1970, 2002
BpmI	CTGGAG	3 cut(s)	444, 1678, 1770
BpuEI	CTTGAG	2 cut(s)	1643, 1792
BpuMI	CCSGG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	2061
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaI	GGTCTC	1 cut(s)	1992
BsaJI	CCNNGG	6 cut(s)	65, 570, 817, 818, 1277, 1691
BsaWI	WCCGGW	3 cut(s)	268, 295, 954
BsaXI	ACNNNNNCTCC	4 cut(s)	780, 810, 1768, 1798
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	134, 377
Bse1I	ACTGG	3 cut(s)	458, 585, 1661
Bse3DI	GCAATG	1 cut(s)	763
Bse8I	GATNNNNATC	1 cut(s)	1131
BseBI	CCWGG	3 cut(s)	819, 1278, 1693
BseCI	ATCGAT	1 cut(s)	2061
BseDI	CCNNGG	6 cut(s)	65, 570, 817, 818, 1277, 1691
BseGI	GGATG	6 cut(s)	310, 493, 580, 648, 678, 1113
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	4 cut(s)	240, 1208, 1338, 2001
BseNI	ACTGG	3 cut(s)	458, 585, 1661
BseRI	GAGGAG	1 cut(s)	1889
BseSI	GKGCMC	1 cut(s)	1864
BseXI	GCAGC	2 cut(s)	452, 1866
Bsh1236I	CGCG	1 cut(s)	811
Bsh1285I	CGRYCG	1 cut(s)	2061
BshFI	GGCC	2 cut(s)	282, 346
BshVI	ATCGAT	1 cut(s)	2061
BsiEI	CGRYCG	1 cut(s)	2061
BsiHKAI	GWGCWC	4 cut(s)	839, 884, 1317, 1864
BsiHKCI	CYCGRG	1 cut(s)	2107
BsiSI	CCGG	7 cut(s)	53, 65, 135, 269, 296, 378, 955
BslFI	GGGAC	4 cut(s)	944, 1773, 1847, 2090
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	5 cut(s)	708, 775, 1725, 1992, 2110
BsmFI	GGGAC	4 cut(s)	944, 1773, 1847, 2090
BsmI	GAATGC	2 cut(s)	508, 1519
BsnI	GGCC	2 cut(s)	282, 346
Bso31I	GGTCTC	1 cut(s)	1992
BsoBI	CYCGRG	1 cut(s)	2107
Bsp1286I	GDGCHC	5 cut(s)	538, 839, 884, 1317, 1864
BspACI	CCGC	7 cut(s)	353, 356, 359, 362, 365, 399, 1882
BspANI	GGCC	2 cut(s)	282, 346
BspCNI	CTCAG	4 cut(s)	241, 1207, 1339, 2000
BspDI	ATCGAT	1 cut(s)	2061
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	1579
BspLI	GGNNCC	4 cut(s)	678, 932, 933, 1761
BspPI	GGATC	4 cut(s)	465, 1065, 1127, 2104
BspTNI	GGTCTC	1 cut(s)	1992
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	2 cut(s)	134, 377
BsrI	ACTGG	3 cut(s)	458, 585, 1661
BssAI	RCCGGY	2 cut(s)	134, 377
BssECI	CCNNGG	6 cut(s)	65, 570, 817, 818, 1277, 1691
BssSI	CACGAG	1 cut(s)	964
BssT1I	CCWWGG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	964
Bst2UI	CCWGG	3 cut(s)	819, 1278, 1693
Bst4CI	ACNGT	8 cut(s)	11, 85, 372, 1371, 1609, 1670, 1841, 1866
Bst6I	CTCTTC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	58, 379, 445, 1575
BstDEI	CTNAG	8 cut(s)	249, 875, 1151, 1194, 1238, 1265, 1347, 1987
BstEII	GGTNACC	1 cut(s)	264
BstF5I	GGATG	6 cut(s)	310, 493, 580, 648, 678, 1113
BstFNI	CGCG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	1690
BstMAI	GTCTC	5 cut(s)	708, 775, 1725, 1992, 2110
BstMCI	CGRYCG	1 cut(s)	2061
BstMWI	GCNNNNNNNGC	8 cut(s)	352, 361, 364, 542, 590, 1348, 1492, 1876
BstNI	CCWGG	3 cut(s)	819, 1278, 1693
BstNSI	RCATGY	2 cut(s)	616, 703
BstPAI	GACNNNNGTC	2 cut(s)	1369, 1624
BstPI	GGTNACC	1 cut(s)	264
BstSCI	CCNGG	4 cut(s)	64, 817, 1276, 1691
BstSFI	CTRYAG	2 cut(s)	84, 97
BstSLI	GKGCMC	1 cut(s)	1864
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	452, 1866
BstV2I	GAAGAC	3 cut(s)	331, 951, 1655
BstX2I	RGATCY	3 cut(s)	457, 1027, 2096
BstYI	RGATCY	3 cut(s)	457, 1027, 2096
Bsu15I	ATCGAT	1 cut(s)	2061
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	282, 346
BsuTUI	ATCGAT	1 cut(s)	2061
BtrI	CACGTC	3 cut(s)	384, 1700, 2006
BtsCI	GGATG	6 cut(s)	310, 493, 580, 648, 678, 1113
BtsI	GCAGTG	1 cut(s)	1531
BtsIMutI	CAGTG	2 cut(s)	592, 1531
Cac8I	GCNNGC	4 cut(s)	58, 379, 445, 1575
CaiI	CAGNNNCTG	1 cut(s)	1793
CciI	TCATGA	1 cut(s)	1579
CfoI	GCGC	1 cut(s)	1690
Cfr10I	RCCGGY	2 cut(s)	134, 377
Cfr13I	GGNCC	3 cut(s)	676, 931, 1760
ClaI	ATCGAT	1 cut(s)	2061
CseI	GACGC	3 cut(s)	316, 1442, 2037
Csp6I	GTAC	4 cut(s)	350, 774, 1602, 1662
CviAII	CATG	7 cut(s)	482, 613, 700, 910, 1336, 1445, 1580
CviQI	GTAC	4 cut(s)	350, 774, 1602, 1662
DdeI	CTNAG	8 cut(s)	249, 875, 1151, 1194, 1238, 1265, 1347, 1987
DrdI	GACNNNNNNGTC	1 cut(s)	1399
DseDI	GACNNNNNNGTC	1 cut(s)	1399
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	346
Eco24I	GRGCYC	2 cut(s)	538, 839
Eco31I	GGTCTC	1 cut(s)	1992
Eco32I	GATATC	1 cut(s)	1144
Eco47I	GGWCC	3 cut(s)	676, 931, 1760
Eco53kI	GAGCTC	1 cut(s)	837
Eco57I	CTGAAG	3 cut(s)	194, 325, 450
Eco72I	CACGTG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	2107
Eco91I	GGTNACC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	931
EcoO65I	GGTNACC	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	1269
EcoRII	CCWGG	3 cut(s)	817, 1276, 1691
EcoRV	GATATC	1 cut(s)	1144
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	701
EcoT38I	GRGCYC	2 cut(s)	538, 839
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	7 cut(s)	485, 616, 703, 913, 1339, 1448, 1583
FalI	AAGNNNNNCTT	4 cut(s)	1014, 1046, 1017, 1049
FaqI	GGGAC	4 cut(s)	944, 1773, 1847, 2090
FatI	CATG	7 cut(s)	481, 612, 699, 909, 1335, 1444, 1579
FauNDI	CATATG	2 cut(s)	1381, 1714
FbaI	TGATCA	2 cut(s)	478, 1099
FblI	GTMKAC	2 cut(s)	609, 1470
Fnu4HI	GCNGC	7 cut(s)	356, 359, 362, 365, 441, 1880, 1883
FokI	GGATG	6 cut(s)	297, 480, 587, 655, 685, 1120
FriOI	GRGCYC	2 cut(s)	538, 839
Fsp4HI	GCNGC	7 cut(s)	356, 359, 362, 365, 441, 1880, 1883
FspBI	CTAG	9 cut(s)	522, 617, 707, 771, 1017, 1209, 1617, 1634, 2039
GlaI	GCGC	1 cut(s)	1689
GluI	GCNGC	7 cut(s)	356, 359, 362, 365, 441, 1880, 1883
GsuI	CTGGAG	3 cut(s)	444, 1678, 1770
HaeIII	GGCC	2 cut(s)	282, 346
HapII	CCGG	7 cut(s)	53, 65, 135, 269, 296, 378, 955
HgaI	GACGC	3 cut(s)	316, 1442, 2037
HhaI	GCGC	1 cut(s)	1690
Hin1II	CATG	7 cut(s)	485, 616, 703, 913, 1339, 1448, 1583
Hin6I	GCGC	1 cut(s)	1688
HinP1I	GCGC	1 cut(s)	1688
HpaII	CCGG	7 cut(s)	53, 65, 135, 269, 296, 378, 955
HphI	GGTGA	1 cut(s)	1731
Hpy166II	GTNNAC	3 cut(s)	610, 1471, 1862
Hpy188I	TCNGA	9 cut(s)	118, 174, 208, 854, 1050, 1375, 1795, 1974, 1990
Hpy188III	TCNNGA	7 cut(s)	1166, 1219, 1553, 1580, 1754, 1932, 2107
Hpy8I	GTNNAC	3 cut(s)	610, 1471, 1862
Hpy99I	CGWCG	4 cut(s)	170, 1701, 2007, 2053
HpyAV	CCTTC	7 cut(s)	226, 266, 428, 921, 1048, 1423, 1897
HpyCH4III	ACNGT	8 cut(s)	11, 85, 372, 1371, 1609, 1670, 1841, 1866
HpyCH4IV	ACGT	4 cut(s)	18, 383, 1699, 2005
HpyF10VI	GCNNNNNNNGC	8 cut(s)	352, 361, 364, 542, 590, 1348, 1492, 1876
HpyF3I	CTNAG	8 cut(s)	249, 875, 1151, 1194, 1238, 1265, 1347, 1987
HpySE526I	ACGT	4 cut(s)	18, 383, 1699, 2005
Hsp92II	CATG	7 cut(s)	485, 616, 703, 913, 1339, 1448, 1583
HspAI	GCGC	1 cut(s)	1688
KflI	GGGWCCC	1 cut(s)	931
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	478, 1099
LmnI	GCTCC	7 cut(s)	437, 542, 590, 788, 879, 1876, 1894
Lsp1109I	GCAGC	2 cut(s)	452, 1866
LweI	GCATC	5 cut(s)	319, 858, 1117, 1329, 1779
MaeI	CTAG	9 cut(s)	522, 617, 707, 771, 1017, 1209, 1617, 1634, 2039
MaeII	ACGT	4 cut(s)	18, 383, 1699, 2005
MaeIII	GTNAC	7 cut(s)	79, 235, 264, 524, 1390, 1626, 1670
MflI	RGATCY	3 cut(s)	457, 1027, 2096
MhlI	GDGCHC	5 cut(s)	538, 839, 884, 1317, 1864
MluCI	AATT	8 cut(s)	651, 996, 1204, 1269, 1413, 1561, 1677, 1925
MlyI	GAGTC	5 cut(s)	107, 498, 849, 1634, 1727
MmeI	TCCRAC	2 cut(s)	141, 1171
Mph1103I	ATGCAT	1 cut(s)	701
MroNI	GCCGGC	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	1029
MseI	TTAA	5 cut(s)	603, 650, 765, 1464, 2122
MslI	CAYNNNNRTG	3 cut(s)	513, 1184, 1449
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	7 cut(s)	53, 65, 135, 269, 296, 378, 955
MspR9I	CCNGG	4 cut(s)	66, 819, 1278, 1693
Mva1269I	GAATGC	2 cut(s)	508, 1519
MvaI	CCWGG	3 cut(s)	819, 1278, 1693
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	8 cut(s)	352, 361, 364, 542, 590, 1348, 1492, 1876
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	66
NdeI	CATATG	2 cut(s)	1381, 1714
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	7 cut(s)	485, 616, 703, 913, 1339, 1448, 1583
NlaIV	GGNNCC	4 cut(s)	678, 932, 933, 1761
NmuCI	GTSAC	4 cut(s)	524, 1390, 1626, 1670
NsiI	ATGCAT	1 cut(s)	701
NspI	RCATGY	2 cut(s)	616, 703
PagI	TCATGA	1 cut(s)	1579
PasI	CCCWGGG	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	346
PctI	GAATGC	2 cut(s)	508, 1519
PdiI	GCCGGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	7 cut(s)	31, 74, 276, 289, 325, 1376, 1969
PkrI	GCNGC	7 cut(s)	357, 360, 363, 366, 442, 1881, 1884
Ple19I	CGATCG	1 cut(s)	2061
PleI	GAGTC	5 cut(s)	107, 497, 849, 1633, 1727
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	5 cut(s)	107, 497, 849, 1633, 1727
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	931
PshAI	GACNNNNGTC	2 cut(s)	1369, 1624
PshBI	ATTAAT	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	839
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	3 cut(s)	817, 1276, 1691
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	264
PspGI	CCWGG	3 cut(s)	817, 1276, 1691
PspN4I	GGNNCC	4 cut(s)	678, 932, 933, 1761
PspPI	GGNCC	3 cut(s)	676, 931, 1760
PspPPI	RGGWCCY	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	1793
PsuI	RGATCY	3 cut(s)	457, 1027, 2096
PvuI	CGATCG	1 cut(s)	2061
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	351, 775, 1603, 1663
RsaNI	GTAC	4 cut(s)	350, 774, 1602, 1662
RseI	CAYNNNNRTG	3 cut(s)	513, 1184, 1449
SacI	GAGCTC	1 cut(s)	839
SaqAI	TTAA	5 cut(s)	603, 650, 765, 1464, 2122
SatI	GCNGC	7 cut(s)	356, 359, 362, 365, 441, 1880, 1883
Sau96I	GGNCC	3 cut(s)	676, 931, 1760
SchI	GAGTC	5 cut(s)	107, 498, 849, 1634, 1727
ScrFI	CCNGG	4 cut(s)	66, 819, 1278, 1693
SduI	GDGCHC	5 cut(s)	538, 839, 884, 1317, 1864
SfaNI	GCATC	5 cut(s)	319, 858, 1117, 1329, 1779
SfcI	CTRYAG	2 cut(s)	84, 97
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	676, 931, 1760
SmiMI	CAYNNNNRTG	3 cut(s)	513, 1184, 1449
SmlI	CTYRAG	2 cut(s)	1622, 1807
SmoI	CTYRAG	2 cut(s)	1622, 1807
SpeI	ACTAGT	2 cut(s)	521, 770
Sse9I	AATT	8 cut(s)	651, 996, 1204, 1269, 1413, 1561, 1677, 1925
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	7 cut(s)	353, 356, 359, 362, 365, 399, 1882
SspMI	CTAG	9 cut(s)	522, 617, 707, 771, 1017, 1209, 1617, 1634, 2039
SstI	GAGCTC	1 cut(s)	839
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	4 cut(s)	64, 817, 1276, 1691
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	8 cut(s)	11, 85, 372, 1371, 1609, 1670, 1841, 1866
TaiI	ACGT	4 cut(s)	21, 386, 1702, 2008
TaqI	TCGA	7 cut(s)	90, 287, 1119, 1311, 1363, 2051, 2061
TaqII	GACCGA	2 cut(s)	158, 2016
TasI	AATT	8 cut(s)	651, 996, 1204, 1269, 1413, 1561, 1677, 1925
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	5 cut(s)	358, 361, 364, 367, 1885
TfiI	GAWTC	7 cut(s)	31, 74, 276, 289, 325, 1376, 1969
Tru1I	TTAA	5 cut(s)	603, 650, 765, 1464, 2122
Tru9I	TTAA	5 cut(s)	603, 650, 765, 1464, 2122
TscAI	CASTG	2 cut(s)	592, 1531
TseFI	GTSAC	4 cut(s)	524, 1390, 1626, 1670
TseI	GCWGC	2 cut(s)	440, 1879
Tsp45I	GTSAC	4 cut(s)	524, 1390, 1626, 1670
TspDTI	ATGAA	5 cut(s)	447, 936, 1025, 1067, 1967
TspGWI	ACGGA	2 cut(s)	318, 1084
TspRI	CASTG	2 cut(s)	592, 1531
VneI	GTGCAC	1 cut(s)	1860
VpaK11BI	GGWCC	3 cut(s)	676, 931, 1760
VspI	ATTAAT	1 cut(s)	650
XapI	RAATTY	1 cut(s)	1269
XceI	RCATGY	2 cut(s)	616, 703
XmiI	GTMKAC	2 cut(s)	609, 1470
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	9 cut(s)	522, 617, 707, 771, 1017, 1209, 1617, 1634, 2039
Zsp2I	ATGCAT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.