Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8210770 .. 8217712

Gene Structure 6943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGAGGCGGTGGTGAAGCAGGAGCTTCTGAACGATGTGCCGCACTCTTTGCCGAGGCGGAAGGGCGCCATTTCGGCGGTGCCGCCGGACTCGGTAATCGCGCTTGATACGAGCAGTAGTGACTCGGACTCGGACTCGGACTCGGAGGAGGAGAACGGGAAGGACGACGCCGTTTTGGGACGCGTGCTGAAGAAGAGGAGGCTGAACGAGATGGGAGTGATTATGCCGGTCTTGGATCCTCTGCCTTCGCCGGAGGAGGAGTTGCCGCGGATGTTGCCGGCGCCGGCGGTGTCCGGGGCCGGGAGGGGGATGTTAAGTGTTAATTACTGCAAGCAGTTTTGGAAGGCTGGGGAGTTTGAGTTAGTGCCTTGTGGCGATGCGGATTCTTCTGCTGGCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATCAGACGATCCTCTCCCAGTGATTGGAACAAAAATTTGGAAACGATACTTGAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCTGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACGTGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCTATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACTGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGACGGTACCACATCAGGTGTCAAGAGACCACGTTCACTTTCAGATACATTCCGTTCAAAAACGGCTGACAATGGACATGGGAATATACATGTGTCCAGAAAAGGCAAAAGTACAGTGCAAATGCAAACAAAGTTGACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAAGGGTGGAAACGTGCATAAACAAGTGAATGGCAGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAAGCAAGTGAATGGCAGTTTTCATAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCGTGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCATGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACGGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCTAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

900

Amino Acids

100.79

Weight (kDa)

7.9

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	156 - 252	2e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	157 - 236	2.3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	386 - 531	8.1e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1591
Acc65I	GGTACC	1 cut(s)	1697
AccB1I	GGYRCC	4 cut(s)	65, 79, 280, 1697
AccB7I	CCANNNNNTGG	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	1595
AccII	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
AclWI	GGATC	7 cut(s)	230, 243, 876, 881, 966, 1052, 1833
AcoI	YGGCCR	1 cut(s)	1465
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	4 cut(s)	209, 1674, 1884, 2238
AcvI	CACGTG	1 cut(s)	1064
AcyI	GRCGYC	3 cut(s)	66, 168, 281
AfaI	GTAC	7 cut(s)	700, 869, 1303, 1537, 1699, 1804, 2290
AfiI	CCNNNNNNNGG	7 cut(s)	300, 306, 897, 1893, 1959, 2025, 2300
AflII	CTTAAG	1 cut(s)	2450
AflIII	ACRYGT	3 cut(s)	181, 1780, 2152
AhdI	GACNNNNNGTC	1 cut(s)	625
AjiI	CACGTC	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
AloI	GAACNNNNNNTCC	2 cut(s)	950, 982
Alw21I	GWGCWC	2 cut(s)	809, 1242
Alw26I	GTCTC	3 cut(s)	612, 1658, 1711
AlwI	GGATC	7 cut(s)	230, 243, 876, 881, 966, 1052, 1833
Ama87I	CYCGRG	2 cut(s)	993, 1556
AoxI	GGCC	2 cut(s)	297, 1465
ApeKI	GCWGC	7 cut(s)	1175, 1337, 1451, 1622, 2374, 2578, 2617
ApoI	RAATTY	1 cut(s)	907
ArsI	GACNNNNNNTTYG	2 cut(s)	2315, 2347
Asp718I	GGTACC	1 cut(s)	1697
AspLEI	GCGC	3 cut(s)	68, 103, 283
AspS9I	GGNCC	3 cut(s)	297, 403, 2231
AsuC2I	CCSGG	3 cut(s)	295, 301, 1843
AsuHPI	GGTGA	4 cut(s)	25, 924, 953, 1339
AvaI	CYCGRG	2 cut(s)	993, 1556
AvaII	GGWCC	2 cut(s)	403, 2231
BaeI	ACNNNNGTAYC	4 cut(s)	813, 846, 911, 944
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	4 cut(s)	65, 79, 280, 1697
BanII	GRGCYC	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	1857, 1889
BbrPI	CACGTG	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	957
Bbv12I	GWGCWC	2 cut(s)	809, 1242
BbvI	GCAGC	7 cut(s)	1187, 1324, 1438, 1609, 2386, 2590, 2604
BccI	CCATC	7 cut(s)	205, 394, 746, 1304, 1457, 2222, 2686
BceAI	ACGGC	2 cut(s)	155, 1770
BciVI	GTATCC	1 cut(s)	1308
BcnI	CCSGG	3 cut(s)	295, 301, 1843
BcoDI	GTCTC	3 cut(s)	612, 1658, 1711
BfaI	CTAG	3 cut(s)	942, 1299, 2136
BfmI	CTRYAG	2 cut(s)	1452, 2618
BfoI	RGCGCY	2 cut(s)	69, 284
BfrI	CTTAAG	1 cut(s)	2450
BfuI	GTATCC	1 cut(s)	1308
BglI	GCCNNNNNGGC	2 cut(s)	74, 1435
BmcAI	AGTACT	1 cut(s)	1303
Bme1390I	CCNGG	3 cut(s)	295, 301, 1843
Bme18I	GGWCC	2 cut(s)	403, 2231
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmeT110I	CYCGRG	2 cut(s)	993, 1556
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	3 cut(s)	297, 403, 2231
BmiI	GGNNCC	8 cut(s)	67, 81, 237, 282, 298, 1699, 2305, 2436
BmrFI	CCNGG	3 cut(s)	295, 301, 1843
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	8 cut(s)	367, 1042, 1315, 1357, 1877, 2451, 2614, 2636
BmuI	ACTGGG	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	957
BplI	GAGNNNNNCTC	2 cut(s)	2668, 2700
BpmI	CTGGAG	1 cut(s)	2421
BpuEI	CTTGAG	1 cut(s)	944
BpuMI	CCSGG	3 cut(s)	295, 301, 1843
BsaAI	YACGTR	1 cut(s)	1064
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaHI	GRCGYC	3 cut(s)	66, 168, 281
BsaI	GGTCTC	1 cut(s)	1711
BsaJI	CCNNGG	7 cut(s)	53, 266, 294, 985, 1320, 1468, 1842
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 344, 374
Bsc4I	CCNNNNNNNGG	7 cut(s)	300, 306, 897, 1893, 1959, 2025, 2300
Bse118I	RCCGGY	4 cut(s)	226, 277, 283, 1152
Bse1I	ACTGG	6 cut(s)	447, 517, 891, 964, 1595, 2307
Bse8I	GATNNNNATC	1 cut(s)	1056
BseDI	CCNNGG	7 cut(s)	53, 266, 294, 985, 1320, 1468, 1842
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	7 cut(s)	300, 306, 897, 1893, 1959, 2025, 2300
BseNI	ACTGG	6 cut(s)	447, 517, 891, 964, 1595, 2307
BseRI	GAGGAG	7 cut(s)	161, 164, 211, 269, 272, 817, 1180
BseXI	GCAGC	7 cut(s)	1187, 1324, 1438, 1609, 2386, 2590, 2604
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	3 cut(s)	1608, 2317, 2393
Bsh1236I	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
BshFI	GGCC	2 cut(s)	299, 1467
BshNI	GGYRCC	4 cut(s)	65, 79, 280, 1697
BsiHKAI	GWGCWC	2 cut(s)	809, 1242
BsiHKCI	CYCGRG	2 cut(s)	993, 1556
BsiSI	CCGG	9 cut(s)	86, 227, 251, 278, 284, 294, 300, 1153, 1842
BslFI	GGGAC	4 cut(s)	192, 1255, 1706, 2153
BslI	CCNNNNNNNGG	7 cut(s)	300, 306, 897, 1893, 1959, 2025, 2300
BsmAI	GTCTC	3 cut(s)	612, 1658, 1711
BsmFI	GGGAC	4 cut(s)	192, 1255, 1706, 2153
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	299, 1467
Bso31I	GGTCTC	1 cut(s)	1711
BsoBI	CYCGRG	2 cut(s)	993, 1556
Bsp1286I	GDGCHC	3 cut(s)	463, 809, 1242
Bsp1407I	TGTACA	1 cut(s)	2288
Bsp143I	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
Bsp68I	TCGCGA	1 cut(s)	1092
BspANI	GGCC	2 cut(s)	299, 1467
BspFNI	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
BspHI	TCATGA	2 cut(s)	1513, 2395
BspLI	GGNNCC	8 cut(s)	67, 81, 237, 282, 298, 1699, 2305, 2436
BspMAI	CTGCAG	2 cut(s)	1456, 2622
BspPI	GGATC	7 cut(s)	230, 243, 876, 881, 966, 1052, 1833
BspQI	GCTCTTC	1 cut(s)	1864
BspT107I	GGYRCC	4 cut(s)	65, 79, 280, 1697
BspTI	CTTAAG	1 cut(s)	2450
BspTNI	GGTCTC	1 cut(s)	1711
BsrFI	RCCGGY	4 cut(s)	226, 277, 283, 1152
BsrGI	TGTACA	1 cut(s)	2288
BsrI	ACTGG	6 cut(s)	447, 517, 891, 964, 1595, 2307
BssAI	RCCGGY	4 cut(s)	226, 277, 283, 1152
BssECI	CCNNGG	7 cut(s)	53, 266, 294, 985, 1320, 1468, 1842
BssMI	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
BssNI	GRCGYC	3 cut(s)	66, 168, 281
BssT1I	CCWWGG	2 cut(s)	985, 1320
Bst4CI	ACNGT	8 cut(s)	826, 1035, 1122, 1345, 1697, 1807, 2295, 2549
Bst6I	CTCTTC	3 cut(s)	188, 1864, 2589
BstACI	GRCGYC	3 cut(s)	66, 168, 281
BstAFI	CTTAAG	1 cut(s)	2450
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	2288
BstBAI	YACGTR	1 cut(s)	1064
BstC8I	GCNNGC	9 cut(s)	185, 279, 285, 332, 394, 1884, 1950, 2016, 2082
BstDEI	CTNAG	1 cut(s)	2688
BstDSI	CCRYGG	2 cut(s)	266, 1468
BstEII	GGTNACC	1 cut(s)	930
BstFNI	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
BstH2I	RGCGCY	2 cut(s)	69, 284
BstHHI	GCGC	3 cut(s)	68, 103, 283
BstKTI	GATC	7 cut(s)	238, 876, 884, 961, 1060, 1841, 2523
BstMAI	GTCTC	3 cut(s)	612, 1658, 1711
BstMBI	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 74, 274, 467, 1334, 1435
BstNSI	RCATGY	3 cut(s)	628, 1784, 2156
BstPI	GGTNACC	1 cut(s)	930
BstSCI	CCNGG	3 cut(s)	293, 299, 1841
BstSFI	CTRYAG	2 cut(s)	1452, 2618
BstUI	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
BstV1I	GCAGC	7 cut(s)	1187, 1324, 1438, 1609, 2386, 2590, 2604
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	2 cut(s)	235, 1838
BstYI	RGATCY	2 cut(s)	235, 1838
BsuI	GTATCC	1 cut(s)	1308
BsuRI	GGCC	2 cut(s)	299, 1467
BtgI	CCRYGG	2 cut(s)	266, 1468
BtgZI	GCGATG	2 cut(s)	390, 1107
BtrI	CACGTC	1 cut(s)	721
BtsIMutI	CAGTG	3 cut(s)	510, 898, 1812
BtuMI	TCGCGA	1 cut(s)	1092
Cac8I	GCNNGC	9 cut(s)	185, 279, 285, 332, 394, 1884, 1950, 2016, 2082
CciI	TCATGA	2 cut(s)	1513, 2395
CfoI	GCGC	3 cut(s)	68, 103, 283
Cfr10I	RCCGGY	4 cut(s)	226, 277, 283, 1152
Cfr13I	GGNCC	3 cut(s)	297, 403, 2231
Cfr42I	CCGCGG	2 cut(s)	269, 1471
CseI	GACGC	2 cut(s)	176, 189
Csp6I	GTAC	7 cut(s)	699, 868, 1302, 1536, 1698, 1803, 2289
CviAII	CATG	9 cut(s)	407, 625, 703, 835, 1514, 1769, 1781, 2153, 2396
CviQI	GTAC	7 cut(s)	699, 868, 1302, 1536, 1698, 1803, 2289
DdeI	CTNAG	1 cut(s)	2688
DinI	GGCGCC	2 cut(s)	67, 282
DpnI	GATC	7 cut(s)	237, 875, 883, 960, 1059, 1840, 2522
DpnII	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
DraI	TTTAAA	1 cut(s)	691
DrdI	GACNNNNNNGTC	1 cut(s)	1591
DriI	GACNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	1591
EaeI	YGGCCR	1 cut(s)	1465
Eam1104I	CTCTTC	3 cut(s)	188, 1864, 2589
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	3 cut(s)	188, 1864, 2589
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	985, 1320
Eco24I	GRGCYC	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	1711
Eco47I	GGWCC	2 cut(s)	403, 2231
Eco57I	CTGAAG	4 cut(s)	209, 1674, 1884, 2238
Eco72I	CACGTG	1 cut(s)	1064
Eco88I	CYCGRG	2 cut(s)	993, 1556
Eco91I	GGTNACC	1 cut(s)	930
EcoO65I	GGTNACC	1 cut(s)	930
EcoT14I	CCWWGG	2 cut(s)	985, 1320
EcoT22I	ATGCAT	2 cut(s)	2214, 2629
EcoT38I	GRGCYC	1 cut(s)	463
EgeI	GGCGCC	2 cut(s)	67, 282
EheI	GGCGCC	2 cut(s)	67, 282
ErhI	CCWWGG	2 cut(s)	985, 1320
FaeI	CATG	9 cut(s)	410, 628, 706, 838, 1517, 1772, 1784, 2156, 2399
FaqI	GGGAC	4 cut(s)	192, 1255, 1706, 2153
FatI	CATG	9 cut(s)	406, 624, 702, 834, 1513, 1768, 1780, 2152, 2395
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	1 cut(s)	1595
FriOI	GRGCYC	1 cut(s)	463
FspBI	CTAG	3 cut(s)	942, 1299, 2136
GlaI	GCGC	3 cut(s)	67, 102, 282
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	2421
HaeII	RGCGCY	2 cut(s)	69, 284
HaeIII	GGCC	2 cut(s)	299, 1467
HapII	CCGG	9 cut(s)	86, 227, 251, 278, 284, 294, 300, 1153, 1842
HgaI	GACGC	2 cut(s)	176, 189
HhaI	GCGC	3 cut(s)	68, 103, 283
Hin1I	GRCGYC	3 cut(s)	66, 168, 281
Hin1II	CATG	9 cut(s)	410, 628, 706, 838, 1517, 1772, 1784, 2156, 2399
Hin6I	GCGC	3 cut(s)	66, 101, 281
HinP1I	GCGC	3 cut(s)	66, 101, 281
HincII	GTYRAC	2 cut(s)	1645, 1827
HindII	GTYRAC	2 cut(s)	1645, 1827
HpaII	CCGG	9 cut(s)	86, 227, 251, 278, 284, 294, 300, 1153, 1842
HphI	GGTGA	4 cut(s)	25, 924, 953, 1339
Hpy166II	GTNNAC	6 cut(s)	1596, 1645, 1727, 1827, 2289, 2291
Hpy8I	GTNNAC	6 cut(s)	1596, 1645, 1727, 1827, 2289, 2291
Hpy99I	CGWCG	3 cut(s)	170, 1632, 2586
HpyCH4III	ACNGT	8 cut(s)	826, 1035, 1122, 1345, 1697, 1807, 2295, 2549
HpyCH4IV	ACGT	8 cut(s)	720, 1063, 1630, 1723, 1905, 1971, 2037, 2103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 74, 274, 467, 1334, 1435
HpyF3I	CTNAG	1 cut(s)	2688
HpySE526I	ACGT	8 cut(s)	720, 1063, 1630, 1723, 1905, 1971, 2037, 2103
Hsp92I	GRCGYC	3 cut(s)	66, 168, 281
Hsp92II	CATG	9 cut(s)	410, 628, 706, 838, 1517, 1772, 1784, 2156, 2399
HspAI	GCGC	3 cut(s)	66, 101, 281
KasI	GGCGCC	2 cut(s)	65, 280
KpnI	GGTACC	1 cut(s)	1701
KroI	GCCGGC	2 cut(s)	277, 283
KroNI	GCCGGC	2 cut(s)	279, 285
KspI	CCGCGG	2 cut(s)	269, 1471
Kzo9I	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
LguI	GCTCTTC	1 cut(s)	1864
LmnI	GCTCC	8 cut(s)	22, 467, 478, 804, 857, 1039, 2440, 2665
Lsp1109I	GCAGC	7 cut(s)	1187, 1324, 1438, 1609, 2386, 2590, 2604
LweI	GCATC	8 cut(s)	367, 1042, 1315, 1357, 1877, 2451, 2614, 2636
MaeI	CTAG	3 cut(s)	942, 1299, 2136
MaeII	ACGT	8 cut(s)	720, 1063, 1630, 1723, 1905, 1971, 2037, 2103
MaeIII	GTNAC	5 cut(s)	119, 930, 1279, 1345, 2239
MalI	GATC	7 cut(s)	237, 875, 883, 960, 1059, 1840, 2522
MboI	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	2 cut(s)	235, 1838
MhlI	GDGCHC	3 cut(s)	463, 809, 1242
MluI	ACGCGT	1 cut(s)	181
Mly113I	GGCGCC	2 cut(s)	66, 281
MlyI	GAGTC	6 cut(s)	83, 116, 122, 128, 134, 1548
MmeI	TCCRAC	1 cut(s)	1017
Mph1103I	ATGCAT	2 cut(s)	2214, 2629
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	2 cut(s)	277, 283
MseI	TTAA	8 cut(s)	314, 321, 528, 690, 1425, 2091, 2349, 2451
MslI	CAYNNNNRTG	2 cut(s)	438, 1383
MspA1I	CMGCKG	4 cut(s)	268, 1470, 2237, 2441
MspCI	CTTAAG	1 cut(s)	2450
MspI	CCGG	9 cut(s)	86, 227, 251, 278, 284, 294, 300, 1153, 1842
MspR9I	CCNGG	3 cut(s)	295, 301, 1843
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	5 cut(s)	101, 183, 268, 1092, 1470
MwoI	GCNNNNNNNGC	6 cut(s)	49, 74, 274, 467, 1334, 1435
NaeI	GCCGGC	2 cut(s)	279, 285
NarI	GGCGCC	2 cut(s)	66, 281
NciI	CCSGG	3 cut(s)	295, 301, 1843
NdeII	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
NgoMIV	GCCGGC	2 cut(s)	277, 283
NlaIII	CATG	9 cut(s)	410, 628, 706, 838, 1517, 1772, 1784, 2156, 2399
NlaIV	GGNNCC	8 cut(s)	67, 81, 237, 282, 298, 1699, 2305, 2436
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	5 cut(s)	119, 930, 1279, 1345, 2239
NruI	TCGCGA	1 cut(s)	1092
NsiI	ATGCAT	2 cut(s)	2214, 2629
NspI	RCATGY	3 cut(s)	628, 1784, 2156
PaeR7I	CTCGAG	2 cut(s)	993, 1556
PagI	TCATGA	2 cut(s)	1513, 2395
PciI	ACATGT	2 cut(s)	1780, 2152
PciSI	GCTCTTC	1 cut(s)	1864
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	433
PdiI	GCCGGC	2 cut(s)	279, 285
PflMI	CCANNNNNTGG	1 cut(s)	897
PleI	GAGTC	6 cut(s)	83, 116, 122, 128, 134, 1548
PluTI	GGCGCC	2 cut(s)	69, 284
PmaCI	CACGTG	1 cut(s)	1064
PmlI	CACGTG	1 cut(s)	1064
PpsI	GAGTC	6 cut(s)	83, 116, 122, 128, 134, 1548
Ppu21I	YACGTR	1 cut(s)	1064
PscI	ACATGT	2 cut(s)	1780, 2152
PspCI	CACGTG	1 cut(s)	1064
PspEI	GGTNACC	1 cut(s)	930
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	8 cut(s)	67, 81, 237, 282, 298, 1699, 2305, 2436
PspPI	GGNCC	3 cut(s)	297, 403, 2231
PspXI	VCTCGAGB	2 cut(s)	993, 1556
PstI	CTGCAG	2 cut(s)	1456, 2622
PsuI	RGATCY	2 cut(s)	235, 1838
PvuII	CAGCTG	2 cut(s)	2237, 2441
RruI	TCGCGA	1 cut(s)	1092
RsaI	GTAC	7 cut(s)	700, 869, 1303, 1537, 1699, 1804, 2290
RsaNI	GTAC	7 cut(s)	699, 868, 1302, 1536, 1698, 1803, 2289
RseI	CAYNNNNRTG	2 cut(s)	438, 1383
SacII	CCGCGG	2 cut(s)	269, 1471
SapI	GCTCTTC	1 cut(s)	1864
SaqAI	TTAA	8 cut(s)	314, 321, 528, 690, 1425, 2091, 2349, 2451
Sau3AI	GATC	7 cut(s)	235, 873, 881, 958, 1057, 1838, 2520
Sau96I	GGNCC	3 cut(s)	297, 403, 2231
ScaI	AGTACT	1 cut(s)	1303
SchI	GAGTC	6 cut(s)	83, 116, 122, 128, 134, 1548
ScrFI	CCNGG	3 cut(s)	295, 301, 1843
SduI	GDGCHC	3 cut(s)	463, 809, 1242
SfaNI	GCATC	8 cut(s)	367, 1042, 1315, 1357, 1877, 2451, 2614, 2636
SfcI	CTRYAG	2 cut(s)	1452, 2618
SfoI	GGCGCC	2 cut(s)	67, 282
Sfr274I	CTCGAG	2 cut(s)	993, 1556
Sfr303I	CCGCGG	2 cut(s)	269, 1471
SgrAI	CRCCGGYG	1 cut(s)	283
SgrBI	CCGCGG	2 cut(s)	269, 1471
SinI	GGWCC	2 cut(s)	403, 2231
SlaI	CTCGAG	2 cut(s)	993, 1556
SmiMI	CAYNNNNRTG	2 cut(s)	438, 1383
SmlI	CTYRAG	4 cut(s)	923, 993, 1556, 2450
SmoI	CTYRAG	4 cut(s)	923, 993, 1556, 2450
SspDI	GGCGCC	2 cut(s)	65, 280
SspMI	CTAG	3 cut(s)	942, 1299, 2136
StyD4I	CCNGG	3 cut(s)	293, 299, 1841
StyI	CCWWGG	2 cut(s)	985, 1320
TaaI	ACNGT	8 cut(s)	826, 1035, 1122, 1345, 1697, 1807, 2295, 2549
TaiI	ACGT	8 cut(s)	723, 1066, 1633, 1726, 1908, 1974, 2040, 2106
TaqI	TCGA	5 cut(s)	994, 1203, 1417, 1557, 2523
TatI	WGTACW	3 cut(s)	1301, 1802, 2288
TauI	GCSGC	6 cut(s)	43, 85, 268, 1195, 1441, 1470
Tru1I	TTAA	8 cut(s)	314, 321, 528, 690, 1425, 2091, 2349, 2451
Tru9I	TTAA	8 cut(s)	314, 321, 528, 690, 1425, 2091, 2349, 2451
TscAI	CASTG	3 cut(s)	517, 898, 1812
TseFI	GTSAC	5 cut(s)	119, 930, 1279, 1345, 2239
TseI	GCWGC	7 cut(s)	1175, 1337, 1451, 1622, 2374, 2578, 2617
Tsp45I	GTSAC	5 cut(s)	119, 930, 1279, 1345, 2239
TspDTI	ATGAA	9 cut(s)	407, 614, 861, 992, 1041, 1110, 2180, 2412, 2607
TspGWI	ACGGA	3 cut(s)	573, 1733, 2582
TspRI	CASTG	3 cut(s)	517, 898, 1812
Van91I	CCANNNNNTGG	1 cut(s)	897
Vha464I	CTTAAG	1 cut(s)	2450
VpaK11BI	GGWCC	2 cut(s)	403, 2231
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	941
XceI	RCATGY	3 cut(s)	628, 1784, 2156
XhoI	CTCGAG	2 cut(s)	993, 1556
XmiI	GTMKAC	1 cut(s)	1595
XspI	CTAG	3 cut(s)	942, 1299, 2136
ZrmI	AGTACT	1 cut(s)	1303
Zsp2I	ATGCAT	2 cut(s)	2214, 2629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.