Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

71977472 .. 71979973

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGGGGAAAAGTAACAACAACCCTCGTGCCTATGGTCGCCAAAGCTGCACCAAGCAGTTTTGGAAGGCTGGGGAATACGAAGGAGCTCCTCGCAACACCCGCAGACAAATGGATTCTTCTTCCACTAGTGGATTCGATCACGCCAGGATGCACCCCAAGTTTCTGCACTCCAATGCAACGAGTCACAAGTGGGCTCTTGGAGCTTTCGCGGAGCTTTTAGACAATGCACTGGACGAGGTGCACAGCGGTGCTACCTATGTCAATGTAGACGTGCTTGACAACAAGAAAGACGGAAGCAAAATGCTCCTGGTTGAAGACAATGGCGGTGGGATGGACCCGGAGAAGATGAGGAAGTGCATGTCATTGGGGTATTCAGAGAAAAGCAAGATGGCAGACACCATTGGACAGTACGGAAACGGTTTCAAAACAAGTACCATGAGGCTAGGGGCTGACGTTATCGTCTTCTCTCGTAGTGACAGAACTCAGAGCATAGGGTTGTTGTCTTACACTTTCTTGAGGACCACGGCAAAGGAGGATATTGTAGTTCCCATACTGGACTACGAGAGAAGACGAGGGAATGAAACTTGGGCCAAGATGTTCCGATCCTCAAGTGAAAACTGGGACAAAAGTTTGGAGACAATACTTGAGTGGTCGCCGTTTGAGAGTGAACGAGACTTGGATCATCAGTTTTATATGATGAAGCAGCACGGCACCCGAATAATCATATACAACCTTTGGGAGGACGATGAAGGAAACTTGGAGCTTGACTTGGACACTGAAGCTCATGATATTCAAATGCGAGGCGTGAACCGGGATGAGAAGAACATACAAATGGCTGAACAGTATCCAAACTCTCGTCATTTTTTGACCTACCGCCACTCGTTGAGGAGTTATGCAGCAATTCTCTACTTGCGGCTTCCCACTAACTTTCGAATCATTCTTCGCGGCAAGGATGTTGAGCATCACAACATTTTGAATGATTTGATGTGGTCCGAGCAGATTACGTATAGGCCTAAGCCTATCGAAAAGGAGGAGACATATAAAGCGAAGAAAACCAAGAAGGAAAAGAAGGATACAAATATGGTTGCTGAGGTCACTCTTGGGTTTGTCAAAGATGCAAAAAACCATCTTGATGTTCAAGGGTTCAACGTATATCACAGGAATAGGCTGATCACGCCGTTTTGGAGGGTGTGGAATGCTGCAGGAAGCGATGGCCGCGGTGTTATAGGTGTTATAGAAGCTGATTATATCAACCCAGCTCATGATAAGCAGGGGTTTGAGCATACCTTACTTCTTGACAGACTAAAGCAAAAGTTGGTAGAAACGCAAAAGGCATACTGGTCTACCAATTGTCACAAAATTGGCTATGCTCCACGCCGCAATGTCAGGGCTATTAATGAAGAAAGGGAAGCTGCTAAGTCAGGTAGCCAGAGACCAGTTTTAGATTCAAATCCAGACAAGTCCTCTTCACGCAAGACACCGATTTTCGATTCAAATCCAGATGAGTCCCCTTCAAGCAAGAGACCAGTTTTAGATACAAATCGAGACGAGTCCTCTTCACGAAAGAGACCAGTTTTAGATTCAAATCTAGACAAGTCCTCTTCATGCAAGAGATCACTTCCAGATTCGAATACAAATGAAGCCAAATCCCCCCCACACAAAAGTCAGAAAGTTTCTTCAGACAAATCTCCCAATGGGAATGCGGATATGCACAAGAAAAATACAGTGCAAACAACAACAAAGTCATCAACCAGTCGCCAAGAAATTGTGTTAGGATTAAGTTCTTCAAAACCACATGCTAACATGCATAAACCATCAGCAGCAGCAGCCAAAACCTCACCTGGTAATGCTAACATGAAGGTTGCTACTTCTGATAAGCAAGCAAATGGAAAAAGTACCGATAAGGCAAAGAAAAATTCTGAGAAAAACGTGGATGAAGTGGCACATCATTCACATATGGAAGAAGATACTCACTCTGAACAGGAGTCTACACCATGTGGAAGCAAAAGTCCAACTACCACAAGATCCAAGTCCAAGGGAAATGATCTCAATGGTGGGTGTTCACCTTCAAAGGGTCATTTAAGCGTTGTGGAGCAACCAAGGAAGGAGAACCAAGGGAATGCAGCTGCTGATGTGCAGACTGAAAGATGCAAGTCACGAAGAGAAAATGAGGAACTGATTCAATTATTCGCTGATGAGAAAGCACGAGGAGACAATGAGGAAAACAACTTGAAGGAAGAGTTGCGGAATGCATCCAATACCATTCGAGAATTGAGTATACAGCTGCAAAAGGCAAATGAAGAAATTAAGAAGTTGAACATGCAGCAAGACGAGAGCGCACGACGAAACAAAGAAGAAAACAACTTACTGAAGGAAGAGTTGCGGGATATATCCAATCAGCTCGAAAAGGCAAATGAAGAAATTAAGAAATTGAACATGCAGCAGGACGATCTGATTGACATGTTGGCTGAGAGCGAGATGAAGTTGCGGGACTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

834

Amino Acids

94.6

Weight (kDa)

8.55

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	67 - 181	3.1e-19	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	68 - 147	6.9e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	293 - 447	1.6e-54	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	710
AccI	GTMKAC	4 cut(s)	267, 1343, 1988, 2278
AccII	CGCG	3 cut(s)	209, 945, 1218
AclWI	GGATC	3 cut(s)	597, 687, 2019
AcoI	YGGCCR	1 cut(s)	1213
AcsI	RAATTY	1 cut(s)	1915
AcuI	CTGAAG	3 cut(s)	798, 1662, 2390
AdeI	CACNNNGTG	1 cut(s)	1997
AfaI	GTAC	3 cut(s)	410, 433, 1897
AfiI	CCNNNNNNNGG	2 cut(s)	739, 2072
AflIII	ACRYGT	1 cut(s)	2460
AhlI	ACTAGT	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	143, 306, 1840
AleI	CACNNNNGTG	1 cut(s)	246
Alw21I	GWGCWC	2 cut(s)	88, 243
Alw26I	GTCTC	8 cut(s)	629, 666, 1028, 1426, 1516, 1539, 1561, 2205
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	3 cut(s)	597, 687, 2019
AlwNI	CAGNNNCTG	1 cut(s)	2129
AoxI	GGCC	3 cut(s)	588, 1010, 1213
ApaLI	GTGCAC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	1915
AseI	ATTAAT	1 cut(s)	1395
Asp700I	GAANNNNTTC	1 cut(s)	2178
AspLEI	GCGC	1 cut(s)	2339
AspS9I	GGNCC	4 cut(s)	334, 519, 588, 990
AsuC2I	CCSGG	2 cut(s)	338, 812
AsuHPI	GGTGA	2 cut(s)	1830, 2055
AsuII	TTCGAA	2 cut(s)	931, 1628
AvaII	GGWCC	3 cut(s)	334, 519, 990
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	2 cut(s)	88, 196
BauI	CACGAG	2 cut(s)	24, 2205
BbsI	GAAGAC	3 cut(s)	321, 454, 574
Bbv12I	GWGCWC	2 cut(s)	88, 243
BbvCI	CCTCAGC	1 cut(s)	1089
BccI	CCATC	5 cut(s)	325, 382, 1134, 1205, 1822
BceAI	ACGGC	4 cut(s)	540, 640, 724, 1162
BciT130I	CCWGG	3 cut(s)	145, 308, 1842
BciVI	GTATCC	2 cut(s)	855, 1066
BclI	TGATCA	1 cut(s)	1170
BcnI	CCSGG	2 cut(s)	338, 812
BcoDI	GTCTC	8 cut(s)	629, 666, 1028, 1426, 1516, 1539, 1561, 2205
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	3 cut(s)	126, 443, 1589
BfmI	CTRYAG	1 cut(s)	1200
BfuI	GTATCC	2 cut(s)	855, 1066
Bme1390I	CCNGG	5 cut(s)	145, 308, 338, 812, 1842
Bme18I	GGWCC	3 cut(s)	334, 519, 990
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	4 cut(s)	334, 519, 588, 990
BmiI	GGNNCC	2 cut(s)	336, 712
BmrFI	CCNGG	5 cut(s)	145, 308, 338, 812, 1842
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	5 cut(s)	138, 970, 1105, 2138, 2261
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	3 cut(s)	321, 454, 574
Bpu10I	CCTNAGC	2 cut(s)	1014, 1089
Bpu14I	TTCGAA	2 cut(s)	931, 1628
BpuEI	CTTGAG	3 cut(s)	535, 592, 665
BpuMI	CCSGG	2 cut(s)	338, 812
BsaAI	YACGTR	1 cut(s)	1005
BsaBI	GATNNNNATC	4 cut(s)	1449, 1494, 1539, 1584
BsaI	GGTCTC	3 cut(s)	1426, 1516, 1561
BsaJI	CCNNGG	5 cut(s)	522, 1216, 2034, 2099, 2113
Bsc4I	CCNNNNNNNGG	2 cut(s)	739, 2072
Bse1I	ACTGG	8 cut(s)	234, 558, 623, 1343, 1436, 1526, 1571, 1752
Bse3DI	GCAATG	1 cut(s)	1387
Bse8I	GATNNNNATC	4 cut(s)	1449, 1494, 1539, 1584
BseBI	CCWGG	3 cut(s)	145, 308, 1842
BseDI	CCNNGG	5 cut(s)	522, 1216, 2034, 2099, 2113
BseGI	GGATG	6 cut(s)	153, 336, 820, 958, 1939, 2252
BseJI	GATNNNNATC	4 cut(s)	1449, 1494, 1539, 1584
BseLI	CCNNNNNNNGG	2 cut(s)	739, 2072
BseMI	GCAATG	1 cut(s)	1387
BseMII	CTCAG	4 cut(s)	497, 1080, 1911, 2460
BseNI	ACTGG	8 cut(s)	234, 558, 623, 1343, 1436, 1526, 1571, 1752
BseRI	GAGGAG	4 cut(s)	78, 901, 1046, 2223
BseSI	GKGCMC	1 cut(s)	243
BseYI	CCCAGC	2 cut(s)	68, 1255
BsgI	GTGCAG	3 cut(s)	31, 149, 2156
Bsh1236I	CGCG	3 cut(s)	209, 945, 1218
BshFI	GGCC	3 cut(s)	590, 1012, 1215
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	88, 243
BsiSI	CCGG	2 cut(s)	338, 811
BslFI	GGGAC	2 cut(s)	635, 1492
BslI	CCNNNNNNNGG	2 cut(s)	739, 2072
BsmAI	GTCTC	8 cut(s)	629, 666, 1028, 1426, 1516, 1539, 1561, 2205
BsmBI	CGTCTC	1 cut(s)	1539
BsmFI	GGGAC	2 cut(s)	635, 1492
BsmI	GAATGC	4 cut(s)	1201, 1705, 2125, 2254
BsnI	GGCC	3 cut(s)	590, 1012, 1215
Bso31I	GGTCTC	3 cut(s)	1426, 1516, 1561
Bsp119I	TTCGAA	2 cut(s)	931, 1628
Bsp1286I	GDGCHC	3 cut(s)	88, 196, 243
Bsp143I	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
BspANI	GGCC	3 cut(s)	590, 1012, 1215
BspCNI	CTCAG	4 cut(s)	496, 1081, 1912, 2461
BspFNI	CGCG	3 cut(s)	209, 945, 1218
BspHI	TCATGA	2 cut(s)	784, 1261
BspLI	GGNNCC	2 cut(s)	336, 712
BspMAI	CTGCAG	1 cut(s)	1204
BspPI	GGATC	3 cut(s)	597, 687, 2019
BspT104I	TTCGAA	2 cut(s)	931, 1628
BspT107I	GGYRCC	1 cut(s)	710
BspTNI	GGTCTC	3 cut(s)	1426, 1516, 1561
BsrDI	GCAATG	1 cut(s)	1387
BsrI	ACTGG	8 cut(s)	234, 558, 623, 1343, 1436, 1526, 1571, 1752
BssECI	CCNNGG	5 cut(s)	522, 1216, 2034, 2099, 2113
BssMI	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
BssNAI	GTATAC	1 cut(s)	2279
BssSI	CACGAG	2 cut(s)	24, 2205
BssT1I	CCWWGG	3 cut(s)	2034, 2099, 2113
Bst1107I	GTATAC	1 cut(s)	2279
Bst2BI	CACGAG	2 cut(s)	24, 2205
Bst2UI	CCWGG	3 cut(s)	145, 308, 1842
Bst4CI	ACNGT	4 cut(s)	408, 419, 843, 1726
Bst6I	CTCTTC	6 cut(s)	1471, 1561, 1606, 2155, 2232, 2370
BstBAI	YACGTR	1 cut(s)	1005
BstBI	TTCGAA	2 cut(s)	931, 1628
BstC8I	GCNNGC	1 cut(s)	1881
BstDEI	CTNAG	6 cut(s)	483, 1014, 1089, 1416, 1920, 2469
BstDSI	CCRYGG	2 cut(s)	522, 1216
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	6 cut(s)	153, 336, 820, 958, 1939, 2252
BstFNI	CGCG	3 cut(s)	209, 945, 1218
BstHHI	GCGC	1 cut(s)	2339
BstKTI	GATC	8 cut(s)	139, 605, 682, 1173, 1616, 2027, 2047, 2452
BstMAI	GTCTC	8 cut(s)	629, 666, 1028, 1426, 1516, 1539, 1561, 2205
BstMBI	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 99, 200, 1174, 1215, 1826
BstNI	CCWGG	3 cut(s)	145, 308, 1842
BstNSI	RCATGY	6 cut(s)	361, 1799, 1807, 2323, 2440, 2464
BstSCI	CCNGG	5 cut(s)	143, 306, 336, 810, 1840
BstSFI	CTRYAG	1 cut(s)	1200
BstSLI	GKGCMC	1 cut(s)	243
BstSNI	TACGTA	1 cut(s)	1005
BstUI	CGCG	3 cut(s)	209, 945, 1218
BstV2I	GAAGAC	3 cut(s)	321, 454, 574
BstX2I	RGATCY	1 cut(s)	2024
BstYI	RGATCY	1 cut(s)	2024
BstZ17I	GTATAC	1 cut(s)	2279
BsuI	GTATCC	2 cut(s)	855, 1066
BsuRI	GGCC	3 cut(s)	590, 1012, 1215
BtgI	CCRYGG	2 cut(s)	522, 1216
BtgZI	GCGATG	1 cut(s)	1224
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	6 cut(s)	153, 336, 820, 958, 1939, 2252
BtsIMutI	CAGTG	3 cut(s)	227, 774, 1731
Cac8I	GCNNGC	1 cut(s)	1881
CaiI	CAGNNNCTG	1 cut(s)	2129
CciI	TCATGA	2 cut(s)	784, 1261
CfoI	GCGC	1 cut(s)	2339
Cfr13I	GGNCC	4 cut(s)	334, 519, 588, 990
Cfr42I	CCGCGG	1 cut(s)	1219
CsiI	ACCWGGT	1 cut(s)	1840
Csp6I	GTAC	3 cut(s)	409, 432, 1896
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviQI	GTAC	3 cut(s)	409, 432, 1896
DdeI	CTNAG	6 cut(s)	483, 1014, 1089, 1416, 1920, 2469
DpnI	GATC	8 cut(s)	138, 604, 681, 1172, 1615, 2026, 2046, 2451
DpnII	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
DraIII	CACNNNGTG	1 cut(s)	1997
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	1213
Eam1104I	CTCTTC	6 cut(s)	1471, 1561, 1606, 2155, 2232, 2370
EarI	CTCTTC	6 cut(s)	1471, 1561, 1606, 2155, 2232, 2370
Ecl136II	GAGCTC	1 cut(s)	86
Eco105I	TACGTA	1 cut(s)	1005
Eco130I	CCWWGG	3 cut(s)	2034, 2099, 2113
Eco147I	AGGCCT	1 cut(s)	1012
Eco24I	GRGCYC	2 cut(s)	88, 196
Eco31I	GGTCTC	3 cut(s)	1426, 1516, 1561
Eco47I	GGWCC	3 cut(s)	334, 519, 990
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	798, 1662, 2390
EcoICRI	GAGCTC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRII	CCWGG	3 cut(s)	143, 306, 1840
EcoT14I	CCWWGG	3 cut(s)	2034, 2099, 2113
EcoT22I	ATGCAT	2 cut(s)	1809, 2254
EcoT38I	GRGCYC	2 cut(s)	88, 196
ErhI	CCWWGG	3 cut(s)	2034, 2099, 2113
Esp3I	CGTCTC	1 cut(s)	1539
FaqI	GGGAC	2 cut(s)	635, 1492
FauI	CCCGC	3 cut(s)	107, 2376, 2481
FauNDI	CATATG	1 cut(s)	1956
FbaI	TGATCA	1 cut(s)	1170
FblI	GTMKAC	4 cut(s)	267, 1343, 1988, 2278
FokI	GGATG	6 cut(s)	160, 343, 827, 965, 1946, 2239
FriOI	GRGCYC	2 cut(s)	88, 196
FspBI	CTAG	3 cut(s)	126, 443, 1589
GlaI	GCGC	1 cut(s)	2338
GsaI	CCCAGC	2 cut(s)	72, 1259
HaeIII	GGCC	3 cut(s)	590, 1012, 1215
HapII	CCGG	2 cut(s)	338, 811
HhaI	GCGC	1 cut(s)	2339
Hin6I	GCGC	1 cut(s)	2337
HinP1I	GCGC	1 cut(s)	2337
HpaII	CCGG	2 cut(s)	338, 811
HphI	GGTGA	2 cut(s)	1830, 2055
Hpy166II	GTNNAC	8 cut(s)	241, 268, 668, 808, 1344, 1989, 2063, 2279
Hpy8I	GTNNAC	8 cut(s)	241, 268, 668, 808, 1344, 1989, 2063, 2279
Hpy99I	CGWCG	1 cut(s)	2346
HpyCH4III	ACNGT	4 cut(s)	408, 419, 843, 1726
HpyCH4IV	ACGT	5 cut(s)	270, 453, 1004, 1149, 1929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 99, 200, 1174, 1215, 1826
HpyF3I	CTNAG	6 cut(s)	483, 1014, 1089, 1416, 1920, 2469
HpySE526I	ACGT	5 cut(s)	270, 453, 1004, 1149, 1929
HspAI	GCGC	1 cut(s)	2337
Ksp22I	TGATCA	1 cut(s)	1170
KspI	CCGCGG	1 cut(s)	1219
Kzo9I	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
LmnI	GCTCC	8 cut(s)	83, 91, 200, 211, 309, 760, 1375, 2092
LweI	GCATC	5 cut(s)	138, 970, 1105, 2138, 2261
MabI	ACCWGGT	1 cut(s)	1840
MaeI	CTAG	3 cut(s)	126, 443, 1589
MaeII	ACGT	5 cut(s)	270, 453, 1004, 1149, 1929
MaeIII	GTNAC	6 cut(s)	11, 182, 473, 1093, 1352, 2154
MalI	GATC	8 cut(s)	138, 604, 681, 1172, 1615, 2026, 2046, 2451
MboI	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
MfeI	CAATTG	1 cut(s)	1348
MflI	RGATCY	1 cut(s)	2024
MhlI	GDGCHC	3 cut(s)	88, 196, 243
MlyI	GAGTC	5 cut(s)	190, 1514, 1559, 1994, 2486
MmeI	TCCRAC	1 cut(s)	2036
Mph1103I	ATGCAT	2 cut(s)	1809, 2254
MroXI	GAANNNNTTC	1 cut(s)	2178
MseI	TTAA	5 cut(s)	1395, 1778, 2081, 2307, 2424
MslI	CAYNNNNRTG	4 cut(s)	171, 246, 830, 1131
MspA1I	CMGCKG	4 cut(s)	246, 1218, 2126, 2284
MspI	CCGG	2 cut(s)	338, 811
MspR9I	CCNGG	5 cut(s)	145, 308, 338, 812, 1842
MunI	CAATTG	1 cut(s)	1348
Mva1269I	GAATGC	4 cut(s)	1201, 1705, 2125, 2254
MvaI	CCWGG	3 cut(s)	145, 308, 1842
MvnI	CGCG	3 cut(s)	209, 945, 1218
MwoI	GCNNNNNNNGC	6 cut(s)	45, 99, 200, 1174, 1215, 1826
NciI	CCSGG	2 cut(s)	338, 812
NdeI	CATATG	1 cut(s)	1956
NdeII	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
NlaIV	GGNNCC	2 cut(s)	336, 712
NmuCI	GTSAC	5 cut(s)	182, 473, 1093, 1352, 2154
NsiI	ATGCAT	2 cut(s)	1809, 2254
NspI	RCATGY	6 cut(s)	361, 1799, 1807, 2323, 2440, 2464
NspV	TTCGAA	2 cut(s)	931, 1628
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	2 cut(s)	784, 1261
PceI	AGGCCT	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	2460
PctI	GAATGC	4 cut(s)	1201, 1705, 2125, 2254
PdmI	GAANNNNTTC	1 cut(s)	2178
PfeI	GAWTC	8 cut(s)	113, 132, 933, 1445, 1490, 1580, 1625, 2179
PleI	GAGTC	5 cut(s)	189, 1513, 1558, 1993, 2486
PpsI	GAGTC	5 cut(s)	189, 1513, 1558, 1993, 2486
Ppu21I	YACGTR	1 cut(s)	1005
PscI	ACATGT	1 cut(s)	2460
PshBI	ATTAAT	1 cut(s)	1395
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	143, 306, 1840
PspFI	CCCAGC	2 cut(s)	68, 1255
PspGI	CCWGG	3 cut(s)	143, 306, 1840
PspN4I	GGNNCC	2 cut(s)	336, 712
PspPI	GGNCC	4 cut(s)	334, 519, 588, 990
PstI	CTGCAG	1 cut(s)	1204
PstNI	CAGNNNCTG	1 cut(s)	2129
PsuI	RGATCY	1 cut(s)	2024
PvuII	CAGCTG	2 cut(s)	2126, 2284
RsaI	GTAC	3 cut(s)	410, 433, 1897
RsaNI	GTAC	3 cut(s)	409, 432, 1896
RseI	CAYNNNNRTG	4 cut(s)	171, 246, 830, 1131
SacI	GAGCTC	1 cut(s)	88
SacII	CCGCGG	1 cut(s)	1219
SaqAI	TTAA	5 cut(s)	1395, 1778, 2081, 2307, 2424
Sau3AI	GATC	8 cut(s)	136, 602, 679, 1170, 1613, 2024, 2044, 2449
Sau96I	GGNCC	4 cut(s)	334, 519, 588, 990
SchI	GAGTC	5 cut(s)	190, 1514, 1559, 1994, 2486
ScrFI	CCNGG	5 cut(s)	145, 308, 338, 812, 1842
SduI	GDGCHC	3 cut(s)	88, 196, 243
SexAI	ACCWGGT	1 cut(s)	1840
SfaNI	GCATC	5 cut(s)	138, 970, 1105, 2138, 2261
SfcI	CTRYAG	1 cut(s)	1200
Sfr303I	CCGCGG	1 cut(s)	1219
SfuI	TTCGAA	2 cut(s)	931, 1628
SgrBI	CCGCGG	1 cut(s)	1219
SinI	GGWCC	3 cut(s)	334, 519, 990
SmiMI	CAYNNNNRTG	4 cut(s)	171, 246, 830, 1131
SmlI	CTYRAG	3 cut(s)	514, 607, 644
SmoI	CTYRAG	3 cut(s)	514, 607, 644
SnaBI	TACGTA	1 cut(s)	1005
SpeI	ACTAGT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	1012
SspMI	CTAG	3 cut(s)	126, 443, 1589
SstI	GAGCTC	1 cut(s)	88
StuI	AGGCCT	1 cut(s)	1012
StyD4I	CCNGG	5 cut(s)	143, 306, 336, 810, 1840
StyI	CCWWGG	3 cut(s)	2034, 2099, 2113
TaaI	ACNGT	4 cut(s)	408, 419, 843, 1726
TaiI	ACGT	5 cut(s)	273, 456, 1007, 1152, 1932
TaqI	TCGA	8 cut(s)	135, 931, 1023, 1488, 1543, 1628, 2266, 2403
TauI	GCSGC	4 cut(s)	916, 948, 1218, 1380
TfiI	GAWTC	8 cut(s)	113, 132, 933, 1445, 1490, 1580, 1625, 2179
Tru1I	TTAA	5 cut(s)	1395, 1778, 2081, 2307, 2424
Tru9I	TTAA	5 cut(s)	1395, 1778, 2081, 2307, 2424
TscAI	CASTG	3 cut(s)	234, 781, 1731
TseFI	GTSAC	5 cut(s)	182, 473, 1093, 1352, 2154
Tsp45I	GTSAC	5 cut(s)	182, 473, 1093, 1352, 2154
TspGWI	ACGGA	2 cut(s)	306, 426
TspRI	CASTG	3 cut(s)	234, 781, 1731
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	334, 519, 990
VspI	ATTAAT	1 cut(s)	1395
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	1915
XbaI	TCTAGA	1 cut(s)	1588
XceI	RCATGY	6 cut(s)	361, 1799, 1807, 2323, 2440, 2464
XmiI	GTMKAC	4 cut(s)	267, 1343, 1988, 2278
XmnI	GAANNNNTTC	1 cut(s)	2178
XspI	CTAG	3 cut(s)	126, 443, 1589
Zsp2I	ATGCAT	2 cut(s)	1809, 2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.