Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

12769005 .. 12771217

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGCCAGCATCAGCGATGGGGAAAAGTAACAACAACCCTCGTGCCTATGGTCGCCAAAACTGCACCAAGCAGTTTTGGAAGGCTGGGGAATACGAAGGAGCTCTTCGCAACACCCGCAGACAAATGGATTCTTCTTCCACTAGTGGATTTGATCACGCCAGGATGCACCCCAAGTTTCTGCACTCCAATGCAACGAGTCACAAGTGGGCTCTTGGAGCTTTCGCGGAGCTTTTAGACAATGCGCTGGACGAGGTGCACAGCGGTGCTACCTATGTCAATGTAGACGTGCTTGACAACAAGAAAGACGGAAGCAAAATGCTCCTGGTTGAAGACAATGGCGGTGGGATGGACCCGGAGAAGATGAGGAAGTGCATGTCATTGGGGTATTCAGAGAAAAGCAAGATGGCAGACACCATTGGACAGTACGGAAACGGTTTCAAAACAAGTACCATGAGGCTAGGGGCTGACGTCATCGTCTTCTCTCGTAGTGACAGAACTCAGAGCATAGGGTTGTTGTCTTACACTTTCTTGAGGAGCACGGCAAAGGAGGATATTGTAGTTCCCATACTGGACTACGAGAGAAGACGAGGGAATGAAACTTGGGCCAAGATGTTCCGATCCTCGAGCGAAAACTGGGACAAAAGTTTGGAGACAATACTTGAGTGGTCGCCGTTTGAGAGTGAACGAGACTTGGATCATCAGTTTTATATGATGAAGCAGCACGGCACCCGAATAATCATATACAACCTTTGGGAGGACGATGAAGGAAAGTTGGAGCTTGACTTGGACACTGAAGCTCATGATATTCAAATGCGAGGCGTGAACCGGGACGAGAAGAACATACAAATGGCTGAACAGTATCCGAACTCTCGTCATTTTTTGACCTACCGCCACTCGTTGAGGAGTTATGCAGCAATTCTCTACTTGCGGCTTCCCACTAACTTTCGAATCATTCTTCGCGGCAAGGATGTTGAGCATCACAACATTTTGAATGATTTGATGTGGTCCGAGCAGATTACGTATAGGCCTAAGCCTATCGAAAAGGAGGAGACATATATAGCGAAGAAAACCAAGAAGGAAAAGAAGGATACAAATATGGTTGCTAAGGTCACTCTTGGGTTTGTGAAAGATGCAAAAAACCATCTTGATGTTCAAGGGTTCAGTGTATATCACAGGAATAGGCTGATCACGCCGTTTTGGAGGGTGTGGAATGCTGCAGGAAGCGATGGCCGCGGTGTTATAGGTGTTATAGAAGCTGATTATATCAACCCAGCTCATGATAAGCAGGGGTTTGAGCATACCTTACTTCTTGACAGACTCAAGCAAAAGTTGGCAGAAACGCAAAAGGCATACTGGTCTACCAATTGTCACAAAATTGGCTATGCTCCACGCCGCAATGTCAGGGCTATTAATGAAGAAAGGGAAGCTGCTAAGTCAGGTAGCCAGAGACCAGTTTTAGATTCAAATCCAGACAAGTCCCCTTCACGCAAGACACCGGTTTTAGATTCAAATCCAGATGAGTCCCCTTCAAGCAAGAGACCAGTATTAGATTCAAGTCGAGACGAGTCTTCTTCACGAAAGAGACCAGTTTTAGATTCAAATCTAGACAAGTCCTCTTCACGCAAGAGATCACTTCCAGATTCAAATACAAATGAAGCCAAATCCCCCCACACAAAAGTCAGAAAGTTTCTTCAGTCAAATCTCCCAATGGGAATGCGGATATGCACAAGAAAAATACAGAAGGAGAACCAAGGGAATGTAGCTGCTGATGTGCAGACTGAAAGATGCAAGTCACGAAGGGAAAATGAGGAACTGATTCAATTATTCGCTGATGAGAAAGCACGAGGAGACAATGAGGAAAACAACTTGAAGGAAGAGTTGCGGAATGCATCCAATACCATTCGAGAATTGCGTATACAGCTGCAAAAGGCAAATGAAGAAATTAAGAAGTTGAACACGCAGCAAGACGAGAGAGCACAACGAAACAAAGAAGAAAACAACTTACTGAAGGAAGAGTTGCGGGAAAAATCCAATCAGCTCGAAAAGGCAAATGAAGAAATTAAGAAATTGAACATGCAGCAAGACGATCTGATTGACATGTTGGCTGAGAGCGAGATGAAGTTGCGGCACTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

712

Amino Acids

82.15

Weight (kDa)

8.95

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	72 - 186	1.7e-19	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	73 - 152	5.6e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	298 - 452	2e-54	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AatII	GACGTC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	725
AccI	GTMKAC	3 cut(s)	282, 1358, 1915
AccII	CGCG	3 cut(s)	224, 960, 1233
AclWI	GGATC	2 cut(s)	612, 702
AcoI	YGGCCR	1 cut(s)	1228
AcuI	CTGAAG	3 cut(s)	813, 1676, 2027
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	425, 448
AfiI	CCNNNNNNNGG	1 cut(s)	754
AflIII	ACRYGT	1 cut(s)	2097
AgeI	ACCGGT	1 cut(s)	1495
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	158, 321
AleI	CACNNNNGTG	1 cut(s)	261
Alw21I	GWGCWC	4 cut(s)	103, 258, 539, 1978
Alw26I	GTCTC	8 cut(s)	644, 681, 1043, 1441, 1531, 1554, 1576, 1842
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	612, 702
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	603, 1025, 1228
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	8 cut(s)	718, 911, 1214, 1427, 1763, 1921, 1960, 2077
AseI	ATTAAT	1 cut(s)	1410
AsiGI	ACCGGT	1 cut(s)	1495
Asp700I	GAANNNNTTC	1 cut(s)	1815
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	349, 603, 1005
AsuC2I	CCSGG	2 cut(s)	353, 827
AsuII	TTCGAA	1 cut(s)	946
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	349, 1005
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	2 cut(s)	103, 211
BauI	CACGAG	2 cut(s)	39, 1842
BbsI	GAAGAC	4 cut(s)	336, 469, 589, 1560
Bbv12I	GWGCWC	4 cut(s)	103, 258, 539, 1978
BbvI	GCAGC	8 cut(s)	730, 923, 1201, 1414, 1750, 1908, 1972, 2089
BccI	CCATC	5 cut(s)	10, 340, 397, 1149, 1220
BceAI	ACGGC	4 cut(s)	555, 655, 739, 1177
BciT130I	CCWGG	2 cut(s)	160, 323
BciVI	GTATCC	2 cut(s)	870, 1081
BclI	TGATCA	2 cut(s)	151, 1185
BcnI	CCSGG	2 cut(s)	353, 827
BcoDI	GTCTC	8 cut(s)	644, 681, 1043, 1441, 1531, 1554, 1576, 1842
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	141, 458, 1604
BfmI	CTRYAG	1 cut(s)	1215
BfuI	GTATCC	2 cut(s)	870, 1081
Bme1390I	CCNGG	4 cut(s)	160, 323, 353, 827
Bme18I	GGWCC	2 cut(s)	349, 1005
BmeT110I	CYCGRG	1 cut(s)	622
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	349, 603, 1005
BmiI	GGNNCC	2 cut(s)	351, 727
BmrFI	CCNGG	4 cut(s)	160, 323, 353, 827
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	6 cut(s)	17, 153, 985, 1120, 1775, 1898
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	4 cut(s)	336, 469, 589, 1560
Bpu10I	CCTNAGC	2 cut(s)	1029, 1104
Bpu14I	TTCGAA	1 cut(s)	946
BpuEI	CTTGAG	3 cut(s)	550, 680, 1304
BpuMI	CCSGG	2 cut(s)	353, 827
BsaAI	YACGTR	1 cut(s)	1020
BsaBI	GATNNNNATC	3 cut(s)	1464, 1509, 1599
BsaHI	GRCGYC	1 cut(s)	468
BsaI	GGTCTC	3 cut(s)	1441, 1531, 1576
BsaJI	CCNNGG	2 cut(s)	1231, 1750
BsaWI	WCCGGW	1 cut(s)	1495
Bsc4I	CCNNNNNNNGG	1 cut(s)	754
Bse118I	RCCGGY	1 cut(s)	1495
Bse1I	ACTGG	6 cut(s)	573, 638, 1358, 1451, 1541, 1586
Bse3DI	GCAATG	1 cut(s)	1402
Bse8I	GATNNNNATC	3 cut(s)	1464, 1509, 1599
BseBI	CCWGG	2 cut(s)	160, 323
BseDI	CCNNGG	2 cut(s)	1231, 1750
BseGI	GGATG	4 cut(s)	168, 351, 973, 1889
BseJI	GATNNNNATC	3 cut(s)	1464, 1509, 1599
BseLI	CCNNNNNNNGG	1 cut(s)	754
BseMI	GCAATG	1 cut(s)	1402
BseMII	CTCAG	2 cut(s)	512, 2097
BseNI	ACTGG	6 cut(s)	573, 638, 1358, 1451, 1541, 1586
BseRI	GAGGAG	4 cut(s)	547, 916, 1061, 1860
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	8 cut(s)	730, 923, 1201, 1414, 1750, 1908, 1972, 2089
BseYI	CCCAGC	2 cut(s)	83, 1270
BsgI	GTGCAG	3 cut(s)	46, 164, 1793
Bsh1236I	CGCG	3 cut(s)	224, 960, 1233
BshFI	GGCC	3 cut(s)	605, 1027, 1230
BshNI	GGYRCC	1 cut(s)	725
BshTI	ACCGGT	1 cut(s)	1495
BsiHKAI	GWGCWC	4 cut(s)	103, 258, 539, 1978
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	353, 826, 1496
BslFI	GGGAC	4 cut(s)	650, 842, 1462, 1507
BslI	CCNNNNNNNGG	1 cut(s)	754
BsmAI	GTCTC	8 cut(s)	644, 681, 1043, 1441, 1531, 1554, 1576, 1842
BsmBI	CGTCTC	1 cut(s)	1554
BsmFI	GGGAC	4 cut(s)	650, 842, 1462, 1507
BsmI	GAATGC	3 cut(s)	1216, 1719, 1891
BsnI	GGCC	3 cut(s)	605, 1027, 1230
Bso31I	GGTCTC	3 cut(s)	1441, 1531, 1576
BsoBI	CYCGRG	1 cut(s)	622
Bsp119I	TTCGAA	1 cut(s)	946
Bsp1286I	GDGCHC	5 cut(s)	103, 211, 258, 539, 1978
Bsp143I	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
BspANI	GGCC	3 cut(s)	605, 1027, 1230
BspCNI	CTCAG	2 cut(s)	511, 2098
BspFNI	CGCG	3 cut(s)	224, 960, 1233
BspHI	TCATGA	2 cut(s)	799, 1276
BspLI	GGNNCC	2 cut(s)	351, 727
BspMAI	CTGCAG	1 cut(s)	1219
BspPI	GGATC	2 cut(s)	612, 702
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	946
BspT107I	GGYRCC	1 cut(s)	725
BspTNI	GGTCTC	3 cut(s)	1441, 1531, 1576
BsrDI	GCAATG	1 cut(s)	1402
BsrFI	RCCGGY	1 cut(s)	1495
BsrI	ACTGG	6 cut(s)	573, 638, 1358, 1451, 1541, 1586
BssAI	RCCGGY	1 cut(s)	1495
BssECI	CCNNGG	2 cut(s)	1231, 1750
BssMI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
BssNAI	GTATAC	1 cut(s)	1916
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	39, 1842
BssT1I	CCWWGG	1 cut(s)	1750
Bst1107I	GTATAC	1 cut(s)	1916
Bst2BI	CACGAG	2 cut(s)	39, 1842
Bst2UI	CCWGG	2 cut(s)	160, 323
Bst4CI	ACNGT	3 cut(s)	423, 434, 858
Bst6I	CTCTTC	4 cut(s)	108, 1621, 1869, 2007
BstACI	GRCGYC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	1020
BstBI	TTCGAA	1 cut(s)	946
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2106
BstDSI	CCRYGG	1 cut(s)	1231
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	4 cut(s)	168, 351, 973, 1889
BstFNI	CGCG	3 cut(s)	224, 960, 1233
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	6 cut(s)	154, 620, 697, 1188, 1631, 2089
BstMAI	GTCTC	8 cut(s)	644, 681, 1043, 1441, 1531, 1554, 1576, 1842
BstMBI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1918
BstNI	CCWGG	2 cut(s)	160, 323
BstNSI	RCATGY	3 cut(s)	376, 2077, 2101
BstSCI	CCNGG	4 cut(s)	158, 321, 351, 825
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	258
BstSNI	TACGTA	1 cut(s)	1020
BstUI	CGCG	3 cut(s)	224, 960, 1233
BstV1I	GCAGC	8 cut(s)	730, 923, 1201, 1414, 1750, 1908, 1972, 2089
BstV2I	GAAGAC	4 cut(s)	336, 469, 589, 1560
BstZ17I	GTATAC	1 cut(s)	1916
BsuI	GTATCC	2 cut(s)	870, 1081
BsuRI	GGCC	3 cut(s)	605, 1027, 1230
BtgI	CCRYGG	1 cut(s)	1231
BtgZI	GCGATG	2 cut(s)	29, 1239
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	4 cut(s)	168, 351, 973, 1889
BtsIMutI	CAGTG	2 cut(s)	789, 1168
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	799, 1276
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	1495
Cfr13I	GGNCC	3 cut(s)	349, 603, 1005
Cfr42I	CCGCGG	1 cut(s)	1234
Csp6I	GTAC	2 cut(s)	424, 447
CspAI	ACCGGT	1 cut(s)	1495
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	6 cut(s)	373, 451, 800, 1277, 2074, 2098
CviQI	GTAC	2 cut(s)	424, 447
DdeI	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2106
DpnI	GATC	6 cut(s)	153, 619, 696, 1187, 1630, 2088
DpnII	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	1228
Eam1104I	CTCTTC	4 cut(s)	108, 1621, 1869, 2007
EarI	CTCTTC	4 cut(s)	108, 1621, 1869, 2007
Ecl136II	GAGCTC	1 cut(s)	101
Eco105I	TACGTA	1 cut(s)	1020
Eco130I	CCWWGG	1 cut(s)	1750
Eco147I	AGGCCT	1 cut(s)	1027
Eco24I	GRGCYC	2 cut(s)	103, 211
Eco31I	GGTCTC	3 cut(s)	1441, 1531, 1576
Eco47I	GGWCC	2 cut(s)	349, 1005
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	3 cut(s)	813, 1676, 2027
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	158, 321
EcoT14I	CCWWGG	1 cut(s)	1750
EcoT22I	ATGCAT	1 cut(s)	1891
EcoT38I	GRGCYC	2 cut(s)	103, 211
ErhI	CCWWGG	1 cut(s)	1750
Esp3I	CGTCTC	1 cut(s)	1554
FaeI	CATG	6 cut(s)	376, 454, 803, 1280, 2077, 2101
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	4 cut(s)	650, 842, 1462, 1507
FatI	CATG	6 cut(s)	372, 450, 799, 1276, 2073, 2097
FauI	CCCGC	2 cut(s)	122, 2013
FbaI	TGATCA	2 cut(s)	151, 1185
FblI	GTMKAC	3 cut(s)	282, 1358, 1915
FokI	GGATG	4 cut(s)	175, 358, 980, 1876
FriOI	GRGCYC	2 cut(s)	103, 211
FspBI	CTAG	3 cut(s)	141, 458, 1604
GlaI	GCGC	1 cut(s)	243
GsaI	CCCAGC	2 cut(s)	87, 1274
HaeIII	GGCC	3 cut(s)	605, 1027, 1230
HapII	CCGG	3 cut(s)	353, 826, 1496
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	6 cut(s)	376, 454, 803, 1280, 2077, 2101
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	353, 826, 1496
Hpy166II	GTNNAC	6 cut(s)	256, 283, 683, 823, 1359, 1916
Hpy188I	TCNGA	7 cut(s)	391, 501, 617, 864, 1009, 1682, 2091
Hpy8I	GTNNAC	6 cut(s)	256, 283, 683, 823, 1359, 1916
HpyCH4III	ACNGT	3 cut(s)	423, 434, 858
HpyCH4IV	ACGT	3 cut(s)	285, 468, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1918
HpyF3I	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2106
HpySE526I	ACGT	3 cut(s)	285, 468, 1019
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	6 cut(s)	376, 454, 803, 1280, 2077, 2101
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	2 cut(s)	151, 1185
KspI	CCGCGG	1 cut(s)	1234
Kzo9I	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	7 cut(s)	98, 215, 226, 324, 534, 775, 1390
Lsp1109I	GCAGC	8 cut(s)	730, 923, 1201, 1414, 1750, 1908, 1972, 2089
LweI	GCATC	6 cut(s)	17, 153, 985, 1120, 1775, 1898
MaeI	CTAG	3 cut(s)	141, 458, 1604
MaeII	ACGT	3 cut(s)	285, 468, 1019
MaeIII	GTNAC	6 cut(s)	26, 197, 488, 1108, 1367, 1791
MalI	GATC	6 cut(s)	153, 619, 696, 1187, 1630, 2088
MboI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
MfeI	CAATTG	1 cut(s)	1363
MhlI	GDGCHC	5 cut(s)	103, 211, 258, 539, 1978
MluCI	AATT	8 cut(s)	915, 1363, 1374, 1820, 1907, 1941, 2058, 2066
MlyI	GAGTC	4 cut(s)	205, 1311, 1529, 1574
MmeI	TCCRAC	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	1891
MroXI	GAANNNNTTC	1 cut(s)	1815
MseI	TTAA	3 cut(s)	1410, 1944, 2061
MslI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
MspA1I	CMGCKG	3 cut(s)	261, 1233, 1921
MspI	CCGG	3 cut(s)	353, 826, 1496
MspR9I	CCNGG	4 cut(s)	160, 323, 353, 827
MunI	CAATTG	1 cut(s)	1363
Mva1269I	GAATGC	3 cut(s)	1216, 1719, 1891
MvaI	CCWGG	2 cut(s)	160, 323
MvnI	CGCG	3 cut(s)	224, 960, 1233
MwoI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1918
NciI	CCSGG	2 cut(s)	353, 827
NdeII	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
NlaIII	CATG	6 cut(s)	376, 454, 803, 1280, 2077, 2101
NlaIV	GGNNCC	2 cut(s)	351, 727
NmuCI	GTSAC	5 cut(s)	197, 488, 1108, 1367, 1791
NsiI	ATGCAT	1 cut(s)	1891
NspI	RCATGY	3 cut(s)	376, 2077, 2101
NspV	TTCGAA	1 cut(s)	946
OliI	CACNNNNGTG	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	622
PagI	TCATGA	2 cut(s)	799, 1276
PceI	AGGCCT	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	2097
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	1909
PctI	GAATGC	3 cut(s)	1216, 1719, 1891
PdmI	GAANNNNTTC	1 cut(s)	1815
PfeI	GAWTC	8 cut(s)	128, 948, 1460, 1505, 1550, 1595, 1640, 1816
PinAI	ACCGGT	1 cut(s)	1495
PleI	GAGTC	4 cut(s)	204, 1311, 1528, 1573
PpsI	GAGTC	4 cut(s)	204, 1311, 1528, 1573
Ppu21I	YACGTR	1 cut(s)	1020
PscI	ACATGT	1 cut(s)	2097
PshBI	ATTAAT	1 cut(s)	1410
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	158, 321
PspFI	CCCAGC	2 cut(s)	83, 1270
PspGI	CCWGG	2 cut(s)	158, 321
PspN4I	GGNNCC	2 cut(s)	351, 727
PspPI	GGNCC	3 cut(s)	349, 603, 1005
PspXI	VCTCGAGB	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	1219
PvuII	CAGCTG	1 cut(s)	1921
RsaI	GTAC	2 cut(s)	425, 448
RsaNI	GTAC	2 cut(s)	424, 447
RseI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
SacI	GAGCTC	1 cut(s)	103
SacII	CCGCGG	1 cut(s)	1234
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	1410, 1944, 2061
Sau3AI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2086
Sau96I	GGNCC	3 cut(s)	349, 603, 1005
SchI	GAGTC	4 cut(s)	205, 1311, 1529, 1574
ScrFI	CCNGG	4 cut(s)	160, 323, 353, 827
SduI	GDGCHC	5 cut(s)	103, 211, 258, 539, 1978
SfaNI	GCATC	6 cut(s)	17, 153, 985, 1120, 1775, 1898
SfcI	CTRYAG	1 cut(s)	1215
Sfr274I	CTCGAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	1234
SfuI	TTCGAA	1 cut(s)	946
SgrBI	CCGCGG	1 cut(s)	1234
SinI	GGWCC	2 cut(s)	349, 1005
SlaI	CTCGAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
SmlI	CTYRAG	4 cut(s)	529, 622, 659, 1319
SmoI	CTYRAG	4 cut(s)	529, 622, 659, 1319
SnaBI	TACGTA	1 cut(s)	1020
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	8 cut(s)	915, 1363, 1374, 1820, 1907, 1941, 2058, 2066
SseBI	AGGCCT	1 cut(s)	1027
SspMI	CTAG	3 cut(s)	141, 458, 1604
SstI	GAGCTC	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	4 cut(s)	158, 321, 351, 825
StyI	CCWWGG	1 cut(s)	1750
TaaI	ACNGT	3 cut(s)	423, 434, 858
TaiI	ACGT	3 cut(s)	288, 471, 1022
TaqI	TCGA	6 cut(s)	623, 946, 1038, 1558, 1903, 2040
TasI	AATT	8 cut(s)	915, 1363, 1374, 1820, 1907, 1941, 2058, 2066
TauI	GCSGC	5 cut(s)	931, 963, 1233, 1395, 2128
TfiI	GAWTC	8 cut(s)	128, 948, 1460, 1505, 1550, 1595, 1640, 1816
Tru1I	TTAA	3 cut(s)	1410, 1944, 2061
Tru9I	TTAA	3 cut(s)	1410, 1944, 2061
TscAI	CASTG	2 cut(s)	796, 1168
TseFI	GTSAC	5 cut(s)	197, 488, 1108, 1367, 1791
TseI	GCWGC	8 cut(s)	718, 911, 1214, 1427, 1763, 1921, 1960, 2077
Tsp45I	GTSAC	5 cut(s)	197, 488, 1108, 1367, 1791
TspDTI	ATGAA	8 cut(s)	609, 728, 777, 1428, 1668, 1950, 2067, 2132
TspGWI	ACGGA	2 cut(s)	321, 441
TspRI	CASTG	2 cut(s)	796, 1168
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	349, 1005
VspI	ATTAAT	1 cut(s)	1410
XagI	CCTNNNNNAGG	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	1603
XceI	RCATGY	3 cut(s)	376, 2077, 2101
XhoI	CTCGAG	1 cut(s)	622
XmiI	GTMKAC	3 cut(s)	282, 1358, 1915
XmnI	GAANNNNTTC	1 cut(s)	1815
XspI	CTAG	3 cut(s)	141, 458, 1604
ZraI	GACGTC	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	1891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.