Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

5056179 .. 5062826

Gene Structure 6648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08810.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGAGGCCGTGGTGAAGCAAGAGCTTCTGAGCAACGTGCCGCACTCTTCTTCCCCGAGGCCGCCCAAGGCAGCCGTGCCGCCGGAATTGGTAATCGCGCTCGACACCAGCAGCAGTAGTGAGTCGGACTCGGAGGAGAACGAGTCGGCCGTTTCGGGACGCGTGCTGAAGAAGAGGAGGCTGAGCGAGATGGGAGTGATTATGCCGGTTCTGGATCCTCAGCCGTCGGAGCAGGATTTGCCGAGGACGCTGACGGCGGCTCCGGCGGCCGGGAAGGGGATGGTGAGTGTGAATTACTGTAAGCAGTTCTGGAAGGCTGGGGAGTTTGAGGCGGTGCCTTGTGGCGATACGGAGTCTTCTGCTGGTGGGATGGACCATGTGAGGATTCATCCGAAGTTTCTGCATTCCAATGCAACCAGCCATAAGTGGGCACTTGGAGCTTTTGCGGAGCTATTAGACAACGCATTAGATGAGGTTTCCACTGGTGCTACGTATGTTATTGTAGATATGCTTGAGAATCAGAAAGACGGAAGCCGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACGAAAAGCAAAATTGCAAACACAATTGGACAATACGGAAATGGGTTTAAAACAAGCACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGGTTGCTGTCTTACACATTTTTAAGGAGCACAGGAAAGGAAGATACTGTAGTTCCCATGCTTGATTATGAAAAACAAGGAACAGATTGGCATAGGATCAGACGATCCTCTCTAAGTGATTGGAACAAAAATGTGGAAACAATACTTCAGTGGTCACCATTTTCTACAGAAGAAGACTTAGATCACCAGTTCTGTATGATCAAAAACCAAGGGACTCGAGTAATCATATACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGTTGATCGATATGATATTCAAATTAGAGGTGTCAATCGCGATGAGAAGAATATACAAATGGCTAAACAGTATCCTAACTCTCGTCATTTTTTGACCTATCGGCACTCATTGAGGAGTTACGCAGCAATTCTATATTTGCGGCTACCCATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATCGGCCACAGTCTACTACTACTGATGGGATCCTCAAGGATGCAAATATGGCTGCTACTGTCACTATTGGGTTTGTGAAGGATGCAAAATATCATATTGATGTTCAAGGGTTCAATGTGTATCACAAGAATCGACTGATTAAGCCATTTTGGAGGCTTTGGAATGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAACTAGTGCAGATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGGCGTAATAAGAAGGTCAATGCTGAAGATAAAGAGATTTCCCCTGATTTTCTTTCTGAAAGAGACGGTATCACGTCAGGTGGCAAGAGACCACATTCACTTTCAGACACATTCCGTTCAAAAACAGCTGACAATGGACATGGGAATATGCATGTATCCGGTAAAGGAAAAAGTACAGTGCAAACCCAATCAAAGCTGACAACAAGATCTGAGGAAGAATCAAGCTCTTCTGAAGAAACACTACCTTTGCCACCCAATGTTAGGGGTGACAACGTGCATAAACAAGTCAACGGTGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGACAAGCAAGCGAATGGCAGTATTCATAAGCCAAATACTGCTATGCATTATTCTGGAAAAGGTGGTCAAGCAGTGACTGAATTATCTTCAGATATGGAAGAAACTGAAACCCGACAAGAGTGTACGCCATGCCGAGGAACCAGTGTATCAGCCACAAAATCCAAGTCAAAGGAAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAACGATTGAGAAAGGAGAATCTTGAACTGAAAGAAAAATTGAAAAAACAGGGCACAGGGGCTGCCGCTGGATTGCTGAAGGATTTTCTGCTGGAAAGGGAGAAGAACACGACACTTGAAACTAAGCTGCAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAGGGAACAAGATAGTCTAATCAATATATTCGCGGAAGAGAGGCAGCGACGAGATGATGTAGAGAACAAGTTGAGAGGGGAGCTGCAGGATGCGTCTGATACTATTCAAGAGTTGATTGAAAAGATAAGGGAGCTGGAAAGGAAGAAGCCTCCTAAGATGGAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

823

Amino Acids

92.38

Weight (kDa)

6.55

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	146 - 242	1.5e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	147 - 226	4.5e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	376 - 521	1.4e-59	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1561
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	1268, 1565
AccII	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
AclWI	GGATC	6 cut(s)	209, 222, 846, 851, 1279, 1292
AcoI	YGGCCR	4 cut(s)	147, 267, 1259, 1435
AcuI	CTGAAG	6 cut(s)	188, 878, 1641, 1848, 2004, 2237
AfaI	GTAC	3 cut(s)	1507, 1771, 2056
AfiI	CCNNNNNNNGG	5 cut(s)	269, 276, 427, 1857, 2066
AflIII	ACRYGT	2 cut(s)	160, 1918
AhdI	GACNNNNNGTC	1 cut(s)	595
AhlI	ACTAGT	1 cut(s)	1537
AjiI	CACGTC	2 cut(s)	691, 1671
Alw21I	GWGCWC	2 cut(s)	779, 1212
Alw26I	GTCTC	3 cut(s)	582, 1653, 1678
AlwI	GGATC	6 cut(s)	209, 222, 846, 851, 1279, 1292
AlwNI	CAGNNNCTG	2 cut(s)	2009, 2201
Ama87I	CYCGRG	3 cut(s)	55, 963, 1526
AoxI	GGCC	6 cut(s)	6, 59, 147, 267, 1259, 1435
ArsI	GACNNNNNNTTYG	2 cut(s)	2081, 2113
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	5 cut(s)	25, 295, 894, 923, 1874
AvaI	CYCGRG	3 cut(s)	55, 963, 1526
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	2 cut(s)	433, 2195
BaeI	ACNNNNGTAYC	4 cut(s)	783, 816, 2061, 2094
BamHI	GGATCC	2 cut(s)	214, 1284
BanI	GGYRCC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	1821, 1853
BbsI	GAAGAC	2 cut(s)	348, 927
Bbv12I	GWGCWC	2 cut(s)	779, 1212
BbvCI	CCTCAGC	1 cut(s)	219
BccI	CCATC	8 cut(s)	184, 274, 364, 716, 1178, 1274, 1427, 2452
BceAI	ACGGC	5 cut(s)	59, 134, 208, 270, 1613
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciVI	GTATCC	2 cut(s)	1104, 1762
BclI	TGATCA	1 cut(s)	945
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	582, 1653, 1678
BcuI	ACTAGT	1 cut(s)	1537
BfaI	CTAG	2 cut(s)	1538, 1902
BfmI	CTRYAG	4 cut(s)	795, 912, 1422, 2384
BfuI	GTATCC	2 cut(s)	1104, 1762
BglII	AGATCT	1 cut(s)	1802
BlpI	GCTNAGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	373
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmeT110I	CYCGRG	3 cut(s)	55, 963, 1526
BmgBI	CACGTC	2 cut(s)	691, 1671
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	5 cut(s)	216, 261, 336, 1286, 2071
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	4 cut(s)	1285, 1327, 1536, 2380
BpiI	GAAGAC	2 cut(s)	348, 927
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	533, 1274
BpuMI	CCSGG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	1030
BsaAI	YACGTR	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaI	GGTCTC	1 cut(s)	1678
BsaJI	CCNNGG	7 cut(s)	9, 56, 66, 242, 955, 1438, 2065
BsaWI	WCCGGW	1 cut(s)	1754
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 244, 274
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 276, 427, 1857, 2066
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	4 cut(s)	487, 934, 1565, 2073
Bse8I	GATNNNNATC	1 cut(s)	1026
BseCI	ATCGAT	1 cut(s)	1030
BseDI	CCNNGG	7 cut(s)	9, 56, 66, 242, 955, 1438, 2065
BseGI	GGATG	9 cut(s)	285, 375, 388, 573, 997, 1207, 1300, 1342, 2395
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	5 cut(s)	269, 276, 427, 1857, 2066
BseMII	CTCAG	4 cut(s)	20, 173, 233, 1797
BseNI	ACTGG	4 cut(s)	487, 934, 1565, 2073
BseRI	GAGGAG	3 cut(s)	149, 190, 1150
BseSI	GKGCMC	2 cut(s)	433, 2195
BseX3I	CGGCCG	2 cut(s)	147, 267
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	2 cut(s)	1562, 1578
Bsh1236I	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
Bsh1285I	CGRYCG	2 cut(s)	150, 270
BshFI	GGCC	6 cut(s)	8, 61, 149, 269, 1261, 1437
BshNI	GGYRCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	1030
BsiEI	CGRYCG	2 cut(s)	150, 270
BsiHKAI	GWGCWC	2 cut(s)	779, 1212
BsiHKCI	CYCGRG	3 cut(s)	55, 963, 1526
BsiSI	CCGG	5 cut(s)	83, 206, 263, 270, 1755
BslFI	GGGAC	4 cut(s)	171, 973, 1225, 1919
BslI	CCNNNNNNNGG	5 cut(s)	269, 276, 427, 1857, 2066
BsmAI	GTCTC	3 cut(s)	582, 1653, 1678
BsmBI	CGTCTC	1 cut(s)	1653
BsmFI	GGGAC	4 cut(s)	171, 973, 1225, 1919
BsmI	GAATGC	2 cut(s)	403, 1423
BsnI	GGCC	6 cut(s)	8, 61, 149, 269, 1261, 1437
Bso31I	GGTCTC	1 cut(s)	1678
BsoBI	CYCGRG	3 cut(s)	55, 963, 1526
Bsp1286I	GDGCHC	4 cut(s)	433, 779, 1212, 2195
Bsp143I	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
Bsp1720I	GCTNAGC	1 cut(s)	182
Bsp68I	TCGCGA	1 cut(s)	1062
BspANI	GGCC	6 cut(s)	8, 61, 149, 269, 1261, 1437
BspCNI	CTCAG	4 cut(s)	21, 174, 232, 1798
BspDI	ATCGAT	1 cut(s)	1030
BspFNI	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
BspHI	TCATGA	1 cut(s)	1483
BspLI	GGNNCC	5 cut(s)	216, 261, 336, 1286, 2071
BspMAI	CTGCAG	2 cut(s)	1426, 2388
BspPI	GGATC	6 cut(s)	209, 222, 846, 851, 1279, 1292
BspQI	GCTCTTC	1 cut(s)	1828
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	1678
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	4 cut(s)	487, 934, 1565, 2073
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	7 cut(s)	9, 56, 66, 242, 955, 1438, 2065
BssMI	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
BssT1I	CCWWGG	2 cut(s)	66, 955
Bst6I	CTCTTC	4 cut(s)	52, 167, 1828, 2331
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	164, 1941
BstDEI	CTNAG	8 cut(s)	29, 182, 219, 860, 925, 1806, 2262, 2454
BstDSI	CCRYGG	2 cut(s)	9, 1438
BstEII	GGTNACC	1 cut(s)	900
BstF5I	GGATG	9 cut(s)	285, 375, 388, 573, 997, 1207, 1300, 1342, 2395
BstFNI	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	9 cut(s)	217, 846, 854, 931, 948, 1030, 1287, 1805, 2289
BstMAI	GTCTC	3 cut(s)	582, 1653, 1678
BstMBI	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
BstMCI	CGRYCG	2 cut(s)	150, 270
BstMWI	GCNNNNNNNGC	7 cut(s)	229, 238, 247, 263, 266, 437, 1304
BstNSI	RCATGY	3 cut(s)	598, 1751, 1922
BstPI	GGTNACC	1 cut(s)	900
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	4 cut(s)	795, 912, 1422, 2384
BstSLI	GKGCMC	2 cut(s)	433, 2195
BstSNI	TACGTA	1 cut(s)	492
BstUI	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
BstV2I	GAAGAC	2 cut(s)	348, 927
BstX2I	RGATCY	3 cut(s)	214, 1284, 1802
BstYI	RGATCY	3 cut(s)	214, 1284, 1802
BstZI	CGGCCG	2 cut(s)	147, 267
Bsu15I	ATCGAT	1 cut(s)	1030
BsuI	GTATCC	2 cut(s)	1104, 1762
BsuRI	GGCC	6 cut(s)	8, 61, 149, 269, 1261, 1437
BsuTUI	ATCGAT	1 cut(s)	1030
BtgI	CCRYGG	2 cut(s)	9, 1438
BtgZI	GCGATG	1 cut(s)	1077
BtrI	CACGTC	2 cut(s)	691, 1671
BtsCI	GGATG	9 cut(s)	285, 375, 388, 573, 997, 1207, 1300, 1342, 2395
BtsI	GCAGTG	1 cut(s)	2010
BtsIMutI	CAGTG	5 cut(s)	480, 902, 1779, 2010, 2080
BtuMI	TCGCGA	1 cut(s)	1062
Cac8I	GCNNGC	2 cut(s)	164, 1941
CaiI	CAGNNNCTG	2 cut(s)	2009, 2201
CciI	TCATGA	1 cut(s)	1483
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	373
Cfr42I	CCGCGG	1 cut(s)	1441
ClaI	ATCGAT	1 cut(s)	1030
CseI	GACGC	3 cut(s)	168, 256, 2382
Csp6I	GTAC	3 cut(s)	1506, 1770, 2055
CviAII	CATG	9 cut(s)	377, 595, 673, 805, 1484, 1736, 1748, 1919, 2061
CviQI	GTAC	3 cut(s)	1506, 1770, 2055
DdeI	CTNAG	8 cut(s)	29, 182, 219, 860, 925, 1806, 2262, 2454
DpnI	GATC	9 cut(s)	216, 845, 853, 930, 947, 1029, 1286, 1804, 2288
DpnII	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
DraI	TTTAAA	1 cut(s)	661
DrdI	GACNNNNNNGTC	1 cut(s)	1561
DriI	GACNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	1 cut(s)	1561
EaeI	YGGCCR	4 cut(s)	147, 267, 1259, 1435
EagI	CGGCCG	2 cut(s)	147, 267
Eam1104I	CTCTTC	4 cut(s)	52, 167, 1828, 2331
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	4 cut(s)	52, 167, 1828, 2331
EclXI	CGGCCG	2 cut(s)	147, 267
Eco105I	TACGTA	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	66, 955
Eco31I	GGTCTC	1 cut(s)	1678
Eco47I	GGWCC	1 cut(s)	373
Eco52I	CGGCCG	2 cut(s)	147, 267
Eco57I	CTGAAG	6 cut(s)	188, 878, 1641, 1848, 2004, 2237
Eco88I	CYCGRG	3 cut(s)	55, 963, 1526
Eco91I	GGTNACC	1 cut(s)	900
EcoO65I	GGTNACC	1 cut(s)	900
EcoT14I	CCWWGG	2 cut(s)	66, 955
EcoT22I	ATGCAT	2 cut(s)	1749, 1980
ErhI	CCWWGG	2 cut(s)	66, 955
Esp3I	CGTCTC	1 cut(s)	1653
FaeI	CATG	9 cut(s)	380, 598, 676, 808, 1487, 1739, 1751, 1922, 2064
FaqI	GGGAC	4 cut(s)	171, 973, 1225, 1919
FatI	CATG	9 cut(s)	376, 594, 672, 804, 1483, 1735, 1747, 1918, 2060
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	2 cut(s)	1268, 1565
FokI	GGATG	9 cut(s)	292, 375, 382, 580, 1004, 1214, 1307, 1349, 2402
FspBI	CTAG	2 cut(s)	1538, 1902
GlaI	GCGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	6 cut(s)	8, 61, 149, 269, 1261, 1437
HapII	CCGG	5 cut(s)	83, 206, 263, 270, 1755
HgaI	GACGC	3 cut(s)	168, 256, 2382
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	9 cut(s)	380, 598, 676, 808, 1487, 1739, 1751, 1922, 2064
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	1885
HindII	GTYRAC	1 cut(s)	1885
HpaII	CCGG	5 cut(s)	83, 206, 263, 270, 1755
HphI	GGTGA	5 cut(s)	25, 295, 894, 923, 1874
Hpy166II	GTNNAC	4 cut(s)	1269, 1566, 1885, 2055
Hpy8I	GTNNAC	4 cut(s)	1269, 1566, 1885, 2055
Hpy99I	CGWCG	2 cut(s)	229, 2352
HpyAV	CCTTC	7 cut(s)	268, 307, 992, 1192, 1327, 1603, 2212
HpyCH4IV	ACGT	5 cut(s)	36, 491, 690, 1670, 1869
HpyF10VI	GCNNNNNNNGC	7 cut(s)	229, 238, 247, 263, 266, 437, 1304
HpyF3I	CTNAG	8 cut(s)	29, 182, 219, 860, 925, 1806, 2262, 2454
HpySE526I	ACGT	5 cut(s)	36, 491, 690, 1670, 1869
Hsp92II	CATG	9 cut(s)	380, 598, 676, 808, 1487, 1739, 1751, 1922, 2064
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	945
KspI	CCGCGG	1 cut(s)	1441
Kzo9I	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
LguI	GCTCTTC	1 cut(s)	1828
LmnI	GCTCC	8 cut(s)	229, 265, 437, 448, 774, 1009, 2380, 2431
LweI	GCATC	4 cut(s)	1285, 1327, 1536, 2380
MaeI	CTAG	2 cut(s)	1538, 1902
MaeII	ACGT	5 cut(s)	36, 491, 690, 1670, 1869
MaeIII	GTNAC	7 cut(s)	900, 1139, 1249, 1315, 1862, 1931, 2005
MalI	GATC	9 cut(s)	216, 845, 853, 930, 947, 1029, 1286, 1804, 2288
MboI	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	3 cut(s)	214, 1284, 1802
MhlI	GDGCHC	4 cut(s)	433, 779, 1212, 2195
MluI	ACGCGT	1 cut(s)	160
MlyI	GAGTC	6 cut(s)	122, 131, 152, 362, 955, 1518
MmeI	TCCRAC	3 cut(s)	105, 207, 987
Mph1103I	ATGCAT	2 cut(s)	1749, 1980
MseI	TTAA	4 cut(s)	660, 770, 1395, 2115
MslI	CAYNNNNRTG	2 cut(s)	408, 1353
MspA1I	CMGCKG	3 cut(s)	1440, 1724, 2207
MspI	CCGG	5 cut(s)	83, 206, 263, 270, 1755
MspR9I	CCNGG	1 cut(s)	271
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	403, 1423
MvnI	CGCG	5 cut(s)	98, 162, 1062, 1440, 2333
MwoI	GCNNNNNNNGC	7 cut(s)	229, 238, 247, 263, 266, 437, 1304
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
NlaIII	CATG	9 cut(s)	380, 598, 676, 808, 1487, 1739, 1751, 1922, 2064
NlaIV	GGNNCC	5 cut(s)	216, 261, 336, 1286, 2071
NmeAIII	GCCGAG	2 cut(s)	267, 2090
NmuCI	GTSAC	6 cut(s)	900, 1249, 1315, 1862, 1931, 2005
NruI	TCGCGA	1 cut(s)	1062
NsiI	ATGCAT	2 cut(s)	1749, 1980
NspI	RCATGY	3 cut(s)	598, 1751, 1922
PaeR7I	CTCGAG	2 cut(s)	963, 1526
PagI	TCATGA	1 cut(s)	1483
PciI	ACATGT	1 cut(s)	1918
PciSI	GCTCTTC	1 cut(s)	1828
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	2 cut(s)	403, 1423
PfeI	GAWTC	7 cut(s)	385, 517, 571, 1384, 1814, 1898, 2158
PleI	GAGTC	6 cut(s)	122, 130, 151, 361, 955, 1518
PpsI	GAGTC	6 cut(s)	122, 130, 151, 361, 955, 1518
Ppu21I	YACGTR	1 cut(s)	492
PscI	ACATGT	1 cut(s)	1918
PspEI	GGTNACC	1 cut(s)	900
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	5 cut(s)	216, 261, 336, 1286, 2071
PspPI	GGNCC	1 cut(s)	373
PspXI	VCTCGAGB	2 cut(s)	963, 1526
PstI	CTGCAG	2 cut(s)	1426, 2388
PstNI	CAGNNNCTG	2 cut(s)	2009, 2201
PsuI	RGATCY	3 cut(s)	214, 1284, 1802
PvuII	CAGCTG	1 cut(s)	1724
RruI	TCGCGA	1 cut(s)	1062
RsaI	GTAC	3 cut(s)	1507, 1771, 2056
RsaNI	GTAC	3 cut(s)	1506, 1770, 2055
RseI	CAYNNNNRTG	2 cut(s)	408, 1353
SacII	CCGCGG	1 cut(s)	1441
SapI	GCTCTTC	1 cut(s)	1828
SaqAI	TTAA	4 cut(s)	660, 770, 1395, 2115
Sau3AI	GATC	9 cut(s)	214, 843, 851, 928, 945, 1027, 1284, 1802, 2286
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	6 cut(s)	122, 131, 152, 362, 955, 1518
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	4 cut(s)	433, 779, 1212, 2195
SfaNI	GCATC	4 cut(s)	1285, 1327, 1536, 2380
SfcI	CTRYAG	4 cut(s)	795, 912, 1422, 2384
Sfr274I	CTCGAG	2 cut(s)	963, 1526
Sfr303I	CCGCGG	1 cut(s)	1441
SgrBI	CCGCGG	1 cut(s)	1441
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	2 cut(s)	963, 1526
SmiMI	CAYNNNNRTG	2 cut(s)	408, 1353
SmlI	CTYRAG	4 cut(s)	512, 963, 1289, 1526
SmoI	CTYRAG	4 cut(s)	512, 963, 1289, 1526
SnaBI	TACGTA	1 cut(s)	492
SpeI	ACTAGT	1 cut(s)	1537
SspMI	CTAG	2 cut(s)	1538, 1902
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	66, 955
TaiI	ACGT	5 cut(s)	39, 494, 693, 1673, 1872
TaqI	TCGA	7 cut(s)	102, 964, 1030, 1173, 1387, 1527, 2289
TatI	WGTACW	1 cut(s)	1769
TauI	GCSGC	8 cut(s)	43, 64, 82, 260, 269, 1165, 1440, 2207
TfiI	GAWTC	7 cut(s)	385, 517, 571, 1384, 1814, 1898, 2158
Tru1I	TTAA	4 cut(s)	660, 770, 1395, 2115
Tru9I	TTAA	4 cut(s)	660, 770, 1395, 2115
TscAI	CASTG	5 cut(s)	487, 902, 1779, 2010, 2080
TseFI	GTSAC	6 cut(s)	900, 1249, 1315, 1862, 1931, 2005
Tsp45I	GTSAC	6 cut(s)	900, 1249, 1315, 1862, 1931, 2005
TspDTI	ATGAA	5 cut(s)	377, 584, 831, 1011, 1946
TspGWI	ACGGA	4 cut(s)	365, 543, 663, 1700
TspRI	CASTG	5 cut(s)	487, 902, 1779, 2010, 2080
VpaK11BI	GGWCC	1 cut(s)	373
XceI	RCATGY	3 cut(s)	598, 1751, 1922
XhoI	CTCGAG	2 cut(s)	963, 1526
XmiI	GTMKAC	2 cut(s)	1268, 1565
XspI	CTAG	2 cut(s)	1538, 1902
Zsp2I	ATGCAT	2 cut(s)	1749, 1980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.