Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

60750693 .. 60756897

Gene Structure 6205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGAGGCGGTGGTGAAGCAGGAGCTTCTGAACGACGTGCCGCACTCTTCGCCGAGGCCGAAGGGCGTCATTTCGGCGGTGCCACCGGACTCGGTAATCGCGCTTGATACGAGCAGTAGTGACTCGGACTCGGACTCGGACTCGGACTCGGAGTCGGAGTCGGGGGAGGAGGAGGAGAACGGGAAGGACGACGCCGTTTTGGGACGCGTGCTGAAGAAGAGGAGGCTGAACGAGATGGGAGTGATTATGCCGGTCTTGGATCCTCTGCCTTCGCCGGAGGACGAGGAGTTGCCGCGGATGTTGCCGGCGCCGGCGGTGTCCGGGGCCGGGAGGGGGATGCTGAGTGTTAATTACTGCAAGCAGTTTTGGAAGGCTGGGGAGTTTGAGGTAGTGCCTTGTGGCGATGCGGATTCTTCTGCTGGCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATTGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATCAGACGATCCTCTCCCAGCGATTGGAACAAAAATTTGGAAACGATACTTGAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCTGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACATGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCCATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACCGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGATGGTGCCACATCAGGTGTCAAGAGACCACGTTCACTTTCAGATACGTTCCGTTCAAAAACGGCTGACAATGGACATGGGAATATACATGTGTCCGGTAAAGGGAAAAGTACAGTGCAAATCCAAACAAAGTTGACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGGAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAGCGTGCATAAACAAGTGAATGGCGGGAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAGCGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAACCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAGGCAAGTGAATGGCAGTTTTCATAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCATGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGAAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCTTGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACAGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCTAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

910

Amino Acids

101.44

Weight (kDa)

6.71

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	165 - 261	2e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	166 - 245	2.3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	395 - 540	8.2e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1618
AccB1I	GGYRCC	3 cut(s)	79, 307, 1724
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	1622
AccII	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
AclWI	GGATC	7 cut(s)	254, 267, 903, 908, 993, 1079, 1860
AcoI	YGGCCR	1 cut(s)	1492
AcsI	RAATTY	1 cut(s)	934
AcuI	CTGAAG	4 cut(s)	233, 1701, 1911, 2265
AcyI	GRCGYC	3 cut(s)	66, 192, 308
AfaI	GTAC	6 cut(s)	727, 896, 1330, 1564, 1831, 2317
AflII	CTTAAG	1 cut(s)	2477
AflIII	ACRYGT	3 cut(s)	205, 1807, 2179
AhdI	GACNNNNNGTC	2 cut(s)	151, 652
AjiI	CACGTC	2 cut(s)	37, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AloI	GAACNNNNNNTCC	2 cut(s)	977, 1009
Alw21I	GWGCWC	2 cut(s)	836, 1269
Alw26I	GTCTC	3 cut(s)	639, 1685, 1738
AlwI	GGATC	7 cut(s)	254, 267, 903, 908, 993, 1079, 1860
Ama87I	CYCGRG	2 cut(s)	1020, 1583
AoxI	GGCC	3 cut(s)	56, 324, 1492
ApeKI	GCWGC	7 cut(s)	1202, 1364, 1478, 1649, 2401, 2605, 2644
ApoI	RAATTY	1 cut(s)	934
ArsI	GACNNNNNNTTYG	2 cut(s)	2342, 2374
AspLEI	GCGC	2 cut(s)	103, 310
AspS9I	GGNCC	3 cut(s)	324, 430, 2258
AsuC2I	CCSGG	3 cut(s)	322, 328, 1870
AsuHPI	GGTGA	4 cut(s)	25, 951, 980, 1366
AvaI	CYCGRG	2 cut(s)	1020, 1583
AvaII	GGWCC	2 cut(s)	430, 2258
BaeI	ACNNNNGTAYC	4 cut(s)	840, 873, 938, 971
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	3 cut(s)	79, 307, 1724
BanII	GRGCYC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	1884, 1916
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	836, 1269
BbvI	GCAGC	7 cut(s)	1214, 1351, 1465, 1636, 2413, 2617, 2631
BccI	CCATC	9 cut(s)	229, 421, 773, 1235, 1331, 1484, 1715, 2249, 2713
BceAI	ACGGC	2 cut(s)	179, 1797
BciVI	GTATCC	1 cut(s)	1335
BcnI	CCSGG	3 cut(s)	322, 328, 1870
BcoDI	GTCTC	3 cut(s)	639, 1685, 1738
BfaI	CTAG	3 cut(s)	969, 1326, 2163
BfmI	CTRYAG	2 cut(s)	1479, 2645
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	2477
BfuI	GTATCC	1 cut(s)	1335
BglI	GCCNNNNNGGC	1 cut(s)	1462
Bme1390I	CCNGG	3 cut(s)	322, 328, 1870
Bme18I	GGWCC	2 cut(s)	430, 2258
BmeRI	GACNNNNNGTC	2 cut(s)	151, 652
BmeT110I	CYCGRG	2 cut(s)	1020, 1583
BmgBI	CACGTC	2 cut(s)	37, 748
BmgT120I	GGNCC	3 cut(s)	324, 430, 2258
BmiI	GGNNCC	7 cut(s)	81, 261, 309, 325, 1726, 2332, 2463
BmrFI	CCNGG	3 cut(s)	322, 328, 1870
BmsI	GCATC	9 cut(s)	327, 394, 1069, 1342, 1384, 1904, 2478, 2641, 2663
BpiI	GAAGAC	1 cut(s)	984
BplI	GAGNNNNNCTC	2 cut(s)	2695, 2727
BpmI	CTGGAG	1 cut(s)	2448
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	3 cut(s)	322, 328, 1870
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaHI	GRCGYC	3 cut(s)	66, 192, 308
BsaI	GGTCTC	1 cut(s)	1738
BsaJI	CCNNGG	7 cut(s)	53, 293, 321, 1012, 1347, 1495, 1869
BsaWI	WCCGGW	2 cut(s)	85, 1814
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse118I	RCCGGY	4 cut(s)	250, 304, 310, 1179
Bse1I	ACTGG	5 cut(s)	474, 544, 991, 1622, 2334
Bse8I	GATNNNNATC	1 cut(s)	1083
BseDI	CCNNGG	7 cut(s)	53, 293, 321, 1012, 1347, 1495, 1869
BseJI	GATNNNNATC	1 cut(s)	1083
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	5 cut(s)	474, 544, 991, 1622, 2334
BseRI	GAGGAG	7 cut(s)	182, 185, 188, 235, 299, 844, 1207
BseXI	GCAGC	7 cut(s)	1214, 1351, 1465, 1636, 2413, 2617, 2631
BseYI	CCCAGC	2 cut(s)	374, 917
BsgI	GTGCAG	2 cut(s)	1635, 2420
Bsh1236I	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
BshFI	GGCC	3 cut(s)	58, 326, 1494
BshNI	GGYRCC	3 cut(s)	79, 307, 1724
BsiHKAI	GWGCWC	2 cut(s)	836, 1269
BsiHKCI	CYCGRG	2 cut(s)	1020, 1583
BslFI	GGGAC	3 cut(s)	216, 1282, 2180
BsmAI	GTCTC	3 cut(s)	639, 1685, 1738
BsmFI	GGGAC	3 cut(s)	216, 1282, 2180
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	58, 326, 1494
Bso31I	GGTCTC	1 cut(s)	1738
BsoBI	CYCGRG	2 cut(s)	1020, 1583
Bsp1286I	GDGCHC	3 cut(s)	490, 836, 1269
Bsp1407I	TGTACA	1 cut(s)	2315
Bsp143I	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
Bsp68I	TCGCGA	1 cut(s)	1119
BspANI	GGCC	3 cut(s)	58, 326, 1494
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
BspHI	TCATGA	1 cut(s)	1540
BspLI	GGNNCC	7 cut(s)	81, 261, 309, 325, 1726, 2332, 2463
BspMAI	CTGCAG	2 cut(s)	1483, 2649
BspPI	GGATC	7 cut(s)	254, 267, 903, 908, 993, 1079, 1860
BspQI	GCTCTTC	1 cut(s)	1891
BspT107I	GGYRCC	3 cut(s)	79, 307, 1724
BspTI	CTTAAG	1 cut(s)	2477
BspTNI	GGTCTC	1 cut(s)	1738
BsrFI	RCCGGY	4 cut(s)	250, 304, 310, 1179
BsrGI	TGTACA	1 cut(s)	2315
BsrI	ACTGG	5 cut(s)	474, 544, 991, 1622, 2334
BssAI	RCCGGY	4 cut(s)	250, 304, 310, 1179
BssECI	CCNNGG	7 cut(s)	53, 293, 321, 1012, 1347, 1495, 1869
BssMI	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
BssNI	GRCGYC	3 cut(s)	66, 192, 308
BssT1I	CCWWGG	2 cut(s)	1012, 1347
Bst4CI	ACNGT	6 cut(s)	853, 1062, 1149, 1372, 1834, 2576
Bst6I	CTCTTC	4 cut(s)	52, 212, 1891, 2616
BstACI	GRCGYC	3 cut(s)	66, 192, 308
BstAFI	CTTAAG	1 cut(s)	2477
BstAUI	TGTACA	1 cut(s)	2315
BstDEI	CTNAG	2 cut(s)	341, 2715
BstDSI	CCRYGG	2 cut(s)	293, 1495
BstEII	GGTNACC	1 cut(s)	957
BstFNI	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	103, 310
BstKTI	GATC	7 cut(s)	262, 903, 911, 988, 1087, 1868, 2550
BstMAI	GTCTC	3 cut(s)	639, 1685, 1738
BstMBI	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 301, 494, 1361, 1462
BstNSI	RCATGY	3 cut(s)	655, 1811, 2183
BstPI	GGTNACC	1 cut(s)	957
BstSCI	CCNGG	3 cut(s)	320, 326, 1868
BstSFI	CTRYAG	2 cut(s)	1479, 2645
BstUI	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
BstV1I	GCAGC	7 cut(s)	1214, 1351, 1465, 1636, 2413, 2617, 2631
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	2 cut(s)	259, 1865
BstYI	RGATCY	2 cut(s)	259, 1865
BsuI	GTATCC	1 cut(s)	1335
BsuRI	GGCC	3 cut(s)	58, 326, 1494
BtgI	CCRYGG	2 cut(s)	293, 1495
BtgZI	GCGATG	2 cut(s)	417, 1134
BtrI	CACGTC	2 cut(s)	37, 748
BtsIMutI	CAGTG	2 cut(s)	537, 1839
BtuMI	TCGCGA	1 cut(s)	1119
CciI	TCATGA	1 cut(s)	1540
CfoI	GCGC	2 cut(s)	103, 310
Cfr10I	RCCGGY	4 cut(s)	250, 304, 310, 1179
Cfr13I	GGNCC	3 cut(s)	324, 430, 2258
Cfr42I	CCGCGG	2 cut(s)	296, 1498
CseI	GACGC	3 cut(s)	55, 200, 213
Csp6I	GTAC	6 cut(s)	726, 895, 1329, 1563, 1830, 2316
CviQI	GTAC	6 cut(s)	726, 895, 1329, 1563, 1830, 2316
DdeI	CTNAG	2 cut(s)	341, 2715
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	7 cut(s)	261, 902, 910, 987, 1086, 1867, 2549
DpnII	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
DraI	TTTAAA	1 cut(s)	718
DrdI	GACNNNNNNGTC	1 cut(s)	1618
DriI	GACNNNNNGTC	2 cut(s)	151, 652
DseDI	GACNNNNNNGTC	1 cut(s)	1618
EaeI	YGGCCR	1 cut(s)	1492
Eam1104I	CTCTTC	4 cut(s)	52, 212, 1891, 2616
Eam1105I	GACNNNNNGTC	2 cut(s)	151, 652
EarI	CTCTTC	4 cut(s)	52, 212, 1891, 2616
Eco130I	CCWWGG	2 cut(s)	1012, 1347
Eco24I	GRGCYC	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	1738
Eco47I	GGWCC	2 cut(s)	430, 2258
Eco57I	CTGAAG	4 cut(s)	233, 1701, 1911, 2265
Eco88I	CYCGRG	2 cut(s)	1020, 1583
Eco91I	GGTNACC	1 cut(s)	957
EcoO65I	GGTNACC	1 cut(s)	957
EcoT14I	CCWWGG	2 cut(s)	1012, 1347
EcoT22I	ATGCAT	2 cut(s)	2241, 2656
EcoT38I	GRGCYC	1 cut(s)	490
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	1012, 1347
FaqI	GGGAC	3 cut(s)	216, 1282, 2180
FauI	CCCGC	3 cut(s)	416, 1946, 2012
FblI	GTMKAC	1 cut(s)	1622
FriOI	GRGCYC	1 cut(s)	490
FspBI	CTAG	3 cut(s)	969, 1326, 2163
GlaI	GCGC	2 cut(s)	102, 309
GsaI	CCCAGC	2 cut(s)	378, 921
GsuI	CTGGAG	1 cut(s)	2448
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	58, 326, 1494
HgaI	GACGC	3 cut(s)	55, 200, 213
HhaI	GCGC	2 cut(s)	103, 310
Hin1I	GRCGYC	3 cut(s)	66, 192, 308
Hin6I	GCGC	2 cut(s)	101, 308
HinP1I	GCGC	2 cut(s)	101, 308
HincII	GTYRAC	2 cut(s)	1672, 1854
HindII	GTYRAC	2 cut(s)	1672, 1854
HphI	GGTGA	4 cut(s)	25, 951, 980, 1366
Hpy166II	GTNNAC	6 cut(s)	1623, 1672, 1754, 1854, 2316, 2318
Hpy8I	GTNNAC	6 cut(s)	1623, 1672, 1754, 1854, 2316, 2318
Hpy99I	CGWCG	4 cut(s)	38, 194, 1659, 2613
HpyCH4III	ACNGT	6 cut(s)	853, 1062, 1149, 1372, 1834, 2576
HpyCH4IV	ACGT	7 cut(s)	36, 747, 1657, 1750, 1766, 1932, 2130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 301, 494, 1361, 1462
HpyF3I	CTNAG	2 cut(s)	341, 2715
HpySE526I	ACGT	7 cut(s)	36, 747, 1657, 1750, 1766, 1932, 2130
Hsp92I	GRCGYC	3 cut(s)	66, 192, 308
HspAI	GCGC	2 cut(s)	101, 308
KasI	GGCGCC	1 cut(s)	307
KroI	GCCGGC	2 cut(s)	304, 310
KroNI	GCCGGC	2 cut(s)	306, 312
KspI	CCGCGG	2 cut(s)	296, 1498
Kzo9I	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
LguI	GCTCTTC	1 cut(s)	1891
LmnI	GCTCC	8 cut(s)	22, 494, 505, 831, 884, 1066, 2467, 2692
Lsp1109I	GCAGC	7 cut(s)	1214, 1351, 1465, 1636, 2413, 2617, 2631
LweI	GCATC	9 cut(s)	327, 394, 1069, 1342, 1384, 1904, 2478, 2641, 2663
MaeI	CTAG	3 cut(s)	969, 1326, 2163
MaeII	ACGT	7 cut(s)	36, 747, 1657, 1750, 1766, 1932, 2130
MaeIII	GTNAC	5 cut(s)	119, 957, 1306, 1372, 2266
MalI	GATC	7 cut(s)	261, 902, 910, 987, 1086, 1867, 2549
MboI	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	259, 1865
MhlI	GDGCHC	3 cut(s)	490, 836, 1269
MluI	ACGCGT	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	308
MlyI	GAGTC	9 cut(s)	83, 116, 122, 128, 134, 140, 161, 167, 1575
MmeI	TCCRAC	2 cut(s)	135, 1044
Mph1103I	ATGCAT	2 cut(s)	2241, 2656
MreI	CGCCGGCG	1 cut(s)	310
MroNI	GCCGGC	2 cut(s)	304, 310
MseI	TTAA	6 cut(s)	348, 555, 717, 1452, 2376, 2478
MslI	CAYNNNNRTG	2 cut(s)	465, 1410
MspA1I	CMGCKG	5 cut(s)	295, 1334, 1497, 2264, 2468
MspCI	CTTAAG	1 cut(s)	2477
MspR9I	CCNGG	3 cut(s)	322, 328, 1870
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	460
MvnI	CGCG	5 cut(s)	101, 207, 295, 1119, 1497
MwoI	GCNNNNNNNGC	5 cut(s)	49, 301, 494, 1361, 1462
NaeI	GCCGGC	2 cut(s)	306, 312
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	3 cut(s)	322, 328, 1870
NdeII	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
NgoMIV	GCCGGC	2 cut(s)	304, 310
NlaIV	GGNNCC	7 cut(s)	81, 261, 309, 325, 1726, 2332, 2463
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	5 cut(s)	119, 957, 1306, 1372, 2266
NruI	TCGCGA	1 cut(s)	1119
NsiI	ATGCAT	2 cut(s)	2241, 2656
NspI	RCATGY	3 cut(s)	655, 1811, 2183
PaeR7I	CTCGAG	2 cut(s)	1020, 1583
PagI	TCATGA	1 cut(s)	1540
PciI	ACATGT	2 cut(s)	1807, 2179
PciSI	GCTCTTC	1 cut(s)	1891
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 186
PctI	GAATGC	1 cut(s)	460
PdiI	GCCGGC	2 cut(s)	306, 312
PflMI	CCANNNNNTGG	1 cut(s)	924
PleI	GAGTC	9 cut(s)	83, 116, 122, 128, 134, 140, 160, 166, 1575
PluTI	GGCGCC	1 cut(s)	311
PpsI	GAGTC	9 cut(s)	83, 116, 122, 128, 134, 140, 160, 166, 1575
PscI	ACATGT	2 cut(s)	1807, 2179
PspEI	GGTNACC	1 cut(s)	957
PspFI	CCCAGC	2 cut(s)	374, 917
PspN4I	GGNNCC	7 cut(s)	81, 261, 309, 325, 1726, 2332, 2463
PspPI	GGNCC	3 cut(s)	324, 430, 2258
PspXI	VCTCGAGB	2 cut(s)	1020, 1583
PstI	CTGCAG	2 cut(s)	1483, 2649
PsuI	RGATCY	2 cut(s)	259, 1865
PvuII	CAGCTG	2 cut(s)	2264, 2468
RruI	TCGCGA	1 cut(s)	1119
RsaI	GTAC	6 cut(s)	727, 896, 1330, 1564, 1831, 2317
RsaNI	GTAC	6 cut(s)	726, 895, 1329, 1563, 1830, 2316
RseI	CAYNNNNRTG	2 cut(s)	465, 1410
SacII	CCGCGG	2 cut(s)	296, 1498
SapI	GCTCTTC	1 cut(s)	1891
SaqAI	TTAA	6 cut(s)	348, 555, 717, 1452, 2376, 2478
Sau3AI	GATC	7 cut(s)	259, 900, 908, 985, 1084, 1865, 2547
Sau96I	GGNCC	3 cut(s)	324, 430, 2258
SchI	GAGTC	9 cut(s)	83, 116, 122, 128, 134, 140, 161, 167, 1575
ScrFI	CCNGG	3 cut(s)	322, 328, 1870
SduI	GDGCHC	3 cut(s)	490, 836, 1269
SfaNI	GCATC	9 cut(s)	327, 394, 1069, 1342, 1384, 1904, 2478, 2641, 2663
SfcI	CTRYAG	2 cut(s)	1479, 2645
SfoI	GGCGCC	1 cut(s)	309
Sfr274I	CTCGAG	2 cut(s)	1020, 1583
Sfr303I	CCGCGG	2 cut(s)	296, 1498
SgrAI	CRCCGGYG	1 cut(s)	310
SgrBI	CCGCGG	2 cut(s)	296, 1498
SinI	GGWCC	2 cut(s)	430, 2258
SlaI	CTCGAG	2 cut(s)	1020, 1583
SmiMI	CAYNNNNRTG	2 cut(s)	465, 1410
SmlI	CTYRAG	4 cut(s)	950, 1020, 1583, 2477
SmoI	CTYRAG	4 cut(s)	950, 1020, 1583, 2477
SspDI	GGCGCC	1 cut(s)	307
SspMI	CTAG	3 cut(s)	969, 1326, 2163
StyD4I	CCNGG	3 cut(s)	320, 326, 1868
StyI	CCWWGG	2 cut(s)	1012, 1347
TaaI	ACNGT	6 cut(s)	853, 1062, 1149, 1372, 1834, 2576
TaiI	ACGT	7 cut(s)	39, 750, 1660, 1753, 1769, 1935, 2133
TaqI	TCGA	5 cut(s)	1021, 1230, 1444, 1584, 2550
TatI	WGTACW	2 cut(s)	1829, 2315
TauI	GCSGC	5 cut(s)	43, 295, 1222, 1468, 1497
Tru1I	TTAA	6 cut(s)	348, 555, 717, 1452, 2376, 2478
Tru9I	TTAA	6 cut(s)	348, 555, 717, 1452, 2376, 2478
TscAI	CASTG	2 cut(s)	544, 1839
TseFI	GTSAC	5 cut(s)	119, 957, 1306, 1372, 2266
TseI	GCWGC	7 cut(s)	1202, 1364, 1478, 1649, 2401, 2605, 2644
Tsp45I	GTSAC	5 cut(s)	119, 957, 1306, 1372, 2266
TspDTI	ATGAA	8 cut(s)	434, 641, 888, 1019, 1068, 1137, 2207, 2634
TspGWI	ACGGA	2 cut(s)	600, 1760
TspRI	CASTG	2 cut(s)	544, 1839
Van91I	CCANNNNNTGG	1 cut(s)	924
Vha464I	CTTAAG	1 cut(s)	2477
VpaK11BI	GGWCC	2 cut(s)	430, 2258
XapI	RAATTY	1 cut(s)	934
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	3 cut(s)	655, 1811, 2183
XhoI	CTCGAG	2 cut(s)	1020, 1583
XmiI	GTMKAC	1 cut(s)	1622
XspI	CTAG	3 cut(s)	969, 1326, 2163
Zsp2I	ATGCAT	2 cut(s)	2241, 2656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.