Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

17929543 .. 17936820

Gene Structure 7278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGACAAAAAACAAAACAAAAAAACATCTTCGCATTGATGAGGAACCTATAATTGCAGAACTAGTAGTAGCGGAAATTTTATTGCGTTTAAACCAGAAGAGAAAAAAGAAAGAAAAGAAAGCTCTGGTTTCTGAGAGTTCAAAGCCCCAGGGAAAAGAAAAGAAAGCGGAATTTAACAAAAAATTGATTCGGTCTTTTGAATCTCTTGTTTTCAAAGCCATGGACGCGAGGGTGAAGCAGGAGCTCCTGGAAGCTTCGTATATTCCAACGCCGAAGCGAAGCGGCGTCAGTTGTAAGTTGCCGCCGGATTCCGTAATTTGCCTGAGCACGAGTAGCGACAGCAGCAGCGGCGACTCCGACTCCGACGATTCGGCGGACGGCGGCGGCGGAGCTTCGGGGGTTTTGACGAAGAAGAGGAAGTTGGACGGGCTGGGAGTCGGATTTCCGGTTGGGTTTTTGAGCCCTCTGCCGCCGGAAGAGGTGGGGCAGCTGCTTCCCGGGCCGGATGCGGCGGTTGCGCGAAGGGAAGAGCGCGGGGTGATGACTCGGTCGCACTTTAAGCAGTTTTGGAAGGCCGGGGATTATGAAGGAGCTCCTTGTGGCGATTGGGATTCTTCTGCCGGTGGGATAGACCATGTCCGGGTTCACCCAAAGTTTCTGCATTCGAATGCTACGAGCCATAAGTGGGCCCTTGGAGCTTTCGCCGAGCTCTTAGACAACGCATTGGACGAGGTTTGCAGTGGTGCTACATATGTTAATATAGATATGCTTGAAAATAAGAAAGACAGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGGATCCAGATAAGATGCGACATTGCATGTCGTTGGGGTATTCTGCGAAAAGCAAAGTTGCAAACACTATTGGACAATATGGAAATGGCTTTAAGACAAGTACCATGAGGCTTGGAGCAGATGTAATTGTGTTCTCTCGTTCGAGTGGAAAAGATGGAAAAAGTGCTACACAGAGCATTGGATTGCTGTCTTACACATTTTTGACGAGCACGGGAAAGGAAGATATTGTAGTTCCCATGCTTGACTATGAGAGAGGACAGGGGGCTTGGAACAAGATGTTAAGATCCTCGTCAATTGATTGGGATAAAAATTTGGAAACAATAATCCAATGGTCCCCATTTTTTGACGAAGAAGAACTGCTTCATCAGTTCTATATGATGAAAACCCATGGAACCCGAATAATCATTTACAACCTTTGGGAGGATGATGAAGGACAGCTGGAGCTTGATTTTGAAGCTGATCCACATGATATTCAAATTAGAGGTGTCAATCGAGACGAGAAGAGTATACAAATGGCAAAAGACCATCCCAATTCTCGTTTTTTCTTAACCTACCAGCACTCATTGAGGAGCTATGTATCAATTCTCTATTTGCGGATTCCTCATAACTTTCGAATTATTCTTCGCGGGAAGGATGTTGAGCACCACAACATAGTCAATGATATGATGATGTCCCAGCAAGTCACATATCGGCCACAGCCTGGTGCTGATGGGGTTACAAAGGATTCAAATATGGTTGCTGTTGTCACCATTGGGTTTGTGAAGGACGCAAAGCATCATATTGATGTTCAAGGGTTTAATGTATATCACAAGAATCGACTGATTAAGCCATTTTGGAGACTTTGGAATGCTGCAGGAAGTGACGGCCGTGGTGTTATAGGTCTTTTAGAAGCTAATTTTGTTGAACCAGCTCATGATAAGCAGGGGTTTGAGCGTACAACAGTTCTTCAAAGACTTGAGGGAAAATTAATAGCTATGCAAAAGACTTACTGGAGAGACAATTGTCATAAAATCGGCTATGCTCCACGGAATAAGAATGGCTCTGCAGATAAAGAGGGTCCTCCCTATGAAACGAATGGTAATACATCAGGCAGCAAGAAACCAGTTAATGTTTCCAGCAAGCTTCGTTTTAAAGCTTCAAAAAATATTTCTACTTACCATGGGCATGTGAATGTGCACATGTCTGATAAAGCCACAAATAGAGTGCAATCGCCCACAAAATCAGGGGAAGGATTGTCAAGCTCATCTGAACCATCATCACCTTCAGCAGTCAATGTTACCGATAAACAAGTGAATGGCAGTAGTAGTAAGGCATTTTCTGCTAAGAAATACTCTGGAAAAGGTATCCCGGTGACTCGGTTATCTTCATGTATGGACGGTACTCAATCTCAGCAAGATTATTCAACACGTGGAGGAACCGGTTTACACACCCCAAGTTCCAAGTCAAAGGGGAATGATGCCAATGGTGATTCAGGCGTTTTGGAGCGATTGAGAAAAGAGAATCGTGAACTGAAGCAAAGGTTGGAGGCGGAAAAGGACAGAGCAACTTCTGCTGATTTGGAGCAGGACTTGCAGCGTGAAAAGGATAGATCCAAGTTACTTGAAACTCAGGTCCAAACGGCACAAGAAAAAATTGAGGAAATGAGCAGGGAACAAGAGACTCTAATTCGCATATTCTCCGAGGAGAGGGAGCGACGAGACAATGAAGAGGCCACTTTGAGAAAGAAGCTGCAGGATGCATCCAGTACCATTCAATTATTGCTTGAAAAGGTAAGGGAACTGGAAGCGAAGAAGTCCGGGAACTTGAAATCCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

882

Amino Acids

98.4

Weight (kDa)

9.06

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1526
AccI	GTMKAC	1 cut(s)	1333
AccII	CGCG	4 cut(s)	227, 520, 534, 1452
AclWI	GGATC	5 cut(s)	824, 837, 1104, 1280, 2409
AcoI	YGGCCR	2 cut(s)	1517, 1690
AcsI	RAATTY	3 cut(s)	75, 170, 1135
AcuI	CTGAAG	2 cut(s)	2073, 2357
AcvI	CACGTG	1 cut(s)	2234
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	4 cut(s)	928, 1762, 2206, 2572
AfiI	CCNNNNNNNGG	5 cut(s)	640, 685, 1246, 1526, 2511
AflIII	ACRYGT	2 cut(s)	2004, 2231
AgeI	ACCGGT	1 cut(s)	2243
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	147, 246, 1525
AjuI	GAANNNNNNNTTGG	4 cut(s)	404, 436, 2330, 2362
AloI	GAACNNNNNNTCC	1 cut(s)	2618
Alw21I	GWGCWC	7 cut(s)	246, 329, 595, 711, 1037, 1470, 2004
Alw26I	GTCTC	5 cut(s)	1314, 1657, 1815, 2477, 2517
Alw44I	GTGCAC	1 cut(s)	2000
AlwI	GGATC	5 cut(s)	824, 837, 1104, 1280, 2409
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	6 cut(s)	500, 573, 687, 1517, 1690, 2535
ApaI	GGGCCC	1 cut(s)	691
ApaLI	GTGCAC	1 cut(s)	2000
ApeKI	GCWGC	8 cut(s)	342, 345, 487, 490, 1676, 1917, 2398, 2554
ApoI	RAATTY	3 cut(s)	75, 170, 1135
AseI	ATTAAT	1 cut(s)	1793
AsiGI	ACCGGT	1 cut(s)	2243
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspLEI	GCGC	2 cut(s)	520, 534
AspS9I	GGNCC	6 cut(s)	500, 687, 688, 1158, 1883, 2437
AsuC2I	CCSGG	6 cut(s)	498, 499, 577, 641, 2174, 2623
AsuHPI	GGTGA	7 cut(s)	244, 550, 638, 1564, 2076, 2188, 2303
AsuII	TTCGAA	2 cut(s)	665, 1438
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	1158, 1883, 2437
BaeGI	GKGCMC	2 cut(s)	691, 2004
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	5 cut(s)	246, 464, 595, 691, 711
BauI	CACGAG	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	2234
Bbv12I	GWGCWC	7 cut(s)	246, 329, 595, 711, 1037, 1470, 2004
BbvI	GCAGC	8 cut(s)	354, 357, 477, 499, 1663, 1929, 2410, 2541
BccI	CCATC	5 cut(s)	820, 974, 1359, 1529, 2086
BceAI	ACGGC	4 cut(s)	394, 1677, 1705, 2460
BciT130I	CCWGG	3 cut(s)	149, 248, 1527
BciVI	GTATCC	1 cut(s)	2180
BcnI	CCSGG	6 cut(s)	498, 499, 577, 641, 2174, 2623
BcoDI	GTCTC	5 cut(s)	1314, 1657, 1815, 2477, 2517
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	3 cut(s)	1677, 1869, 2555
BfuI	GTATCC	1 cut(s)	2180
Bme1390I	CCNGG	9 cut(s)	149, 248, 498, 499, 577, 641, 1527, 2174, 2623
Bme18I	GGWCC	3 cut(s)	1158, 1883, 2437
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	6 cut(s)	500, 687, 688, 1158, 1883, 2437
BmiI	GGNNCC	7 cut(s)	45, 689, 831, 1160, 1219, 1884, 2242
BmrFI	CCNGG	9 cut(s)	149, 248, 498, 499, 577, 641, 1527, 2174, 2623
BmsI	GCATC	6 cut(s)	496, 831, 1609, 2272, 2551, 2573
BoxI	GACNNNNGTC	1 cut(s)	1827
BpmI	CTGGAG	2 cut(s)	1286, 1837
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	2 cut(s)	665, 1438
BpuEI	CTTGAG	1 cut(s)	1802
BpuMI	CCSGG	6 cut(s)	498, 499, 577, 641, 2174, 2623
BsaAI	YACGTR	1 cut(s)	2234
BsaHI	GRCGYC	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	445, 2243
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 933, 963
Bsc4I	CCNNNNNNNGG	5 cut(s)	640, 685, 1246, 1526, 2511
Bse118I	RCCGGY	2 cut(s)	620, 2243
Bse1I	ACTGG	4 cut(s)	1820, 1928, 2568, 2610
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	149, 248, 1527
BseGI	GGATG	7 cut(s)	511, 831, 1255, 1351, 1465, 2564, 2566
BseLI	CCNNNNNNNGG	5 cut(s)	640, 685, 1246, 1526, 2511
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	4 cut(s)	123, 314, 2228, 2447
BseNI	ACTGG	4 cut(s)	1820, 1928, 2568, 2610
BseRI	GAGGAG	2 cut(s)	1408, 2522
BseSI	GKGCMC	2 cut(s)	691, 2004
BseX3I	CGGCCG	1 cut(s)	1690
BseXI	GCAGC	8 cut(s)	354, 357, 477, 499, 1663, 1929, 2410, 2541
BseYI	CCCAGC	2 cut(s)	430, 1500
Bsh1236I	CGCG	4 cut(s)	227, 520, 534, 1452
Bsh1285I	CGRYCG	2 cut(s)	551, 1693
BshFI	GGCC	6 cut(s)	502, 575, 689, 1519, 1692, 2537
BshTI	ACCGGT	1 cut(s)	2243
BsiEI	CGRYCG	2 cut(s)	551, 1693
BsiHKAI	GWGCWC	7 cut(s)	246, 329, 595, 711, 1037, 1470, 2004
BsiHKCI	CYCGRG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	1144, 1483
BslI	CCNNNNNNNGG	5 cut(s)	640, 685, 1246, 1526, 2511
BsmAI	GTCTC	5 cut(s)	1314, 1657, 1815, 2477, 2517
BsmBI	CGTCTC	1 cut(s)	1314
BsmFI	GGGAC	2 cut(s)	1144, 1483
BsmI	GAATGC	3 cut(s)	661, 673, 1678
BsnI	GGCC	6 cut(s)	502, 575, 689, 1519, 1692, 2537
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	2 cut(s)	665, 1438
Bsp120I	GGGCCC	1 cut(s)	687
Bsp1286I	GDGCHC	9 cut(s)	246, 329, 464, 595, 691, 711, 1037, 1470, 2004
Bsp143I	GATC	4 cut(s)	829, 1109, 1285, 2414
Bsp19I	CCATGG	3 cut(s)	219, 1213, 1984
BspANI	GGCC	6 cut(s)	502, 575, 689, 1519, 1692, 2537
BspCNI	CTCAG	4 cut(s)	124, 315, 2227, 2446
BspFNI	CGCG	4 cut(s)	227, 520, 534, 1452
BspHI	TCATGA	1 cut(s)	1738
BspLI	GGNNCC	7 cut(s)	45, 689, 831, 1160, 1219, 1884, 2242
BspMAI	CTGCAG	3 cut(s)	1681, 1873, 2559
BspPI	GGATC	5 cut(s)	824, 837, 1104, 1280, 2409
BspQI	GCTCTTC	1 cut(s)	522
BspT104I	TTCGAA	2 cut(s)	665, 1438
BsrDI	GCAATG	1 cut(s)	847
BsrFI	RCCGGY	2 cut(s)	620, 2243
BsrI	ACTGG	4 cut(s)	1820, 1928, 2568, 2610
BssAI	RCCGGY	2 cut(s)	620, 2243
BssMI	GATC	4 cut(s)	829, 1109, 1285, 2414
BssNAI	GTATAC	1 cut(s)	1334
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	328
BssT1I	CCWWGG	4 cut(s)	219, 691, 1213, 1984
Bst1107I	GTATAC	1 cut(s)	1334
Bst2BI	CACGAG	1 cut(s)	328
Bst2UI	CCWGG	3 cut(s)	149, 248, 1527
Bst4CI	ACNGT	2 cut(s)	1768, 2204
Bst6I	CTCTTC	6 cut(s)	92, 407, 471, 522, 1322, 2526
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	3 cut(s)	2144, 2375, 2395
BstBAI	YACGTR	1 cut(s)	2234
BstBI	TTCGAA	2 cut(s)	665, 1438
BstC8I	GCNNGC	1 cut(s)	1946
BstDEI	CTNAG	6 cut(s)	132, 323, 712, 2148, 2214, 2433
BstDSI	CCRYGG	5 cut(s)	219, 1213, 1693, 1850, 1984
BstENI	CCTNNNNNAGG	1 cut(s)	1244
BstF5I	GGATG	7 cut(s)	511, 831, 1255, 1351, 1465, 2564, 2566
BstFNI	CGCG	4 cut(s)	227, 520, 534, 1452
BstHHI	GCGC	2 cut(s)	520, 534
BstKTI	GATC	4 cut(s)	832, 1112, 1288, 2417
BstMAI	GTCTC	5 cut(s)	1314, 1657, 1815, 2477, 2517
BstMBI	GATC	4 cut(s)	829, 1109, 1285, 2414
BstMCI	CGRYCG	2 cut(s)	551, 1693
BstNI	CCWGG	3 cut(s)	149, 248, 1527
BstNSI	RCATGY	3 cut(s)	856, 1994, 2008
BstPAI	GACNNNNGTC	1 cut(s)	1827
BstSCI	CCNGG	9 cut(s)	147, 246, 496, 497, 575, 639, 1525, 2172, 2621
BstSFI	CTRYAG	3 cut(s)	1677, 1869, 2555
BstSLI	GKGCMC	2 cut(s)	691, 2004
BstUI	CGCG	4 cut(s)	227, 520, 534, 1452
BstV1I	GCAGC	8 cut(s)	354, 357, 477, 499, 1663, 1929, 2410, 2541
BstX2I	RGATCY	3 cut(s)	829, 1109, 2414
BstYI	RGATCY	3 cut(s)	829, 1109, 2414
BstZ17I	GTATAC	1 cut(s)	1334
BstZI	CGGCCG	1 cut(s)	1690
BsuI	GTATCC	1 cut(s)	2180
BsuRI	GGCC	6 cut(s)	502, 575, 689, 1519, 1692, 2537
BtgI	CCRYGG	5 cut(s)	219, 1213, 1693, 1850, 1984
BtsCI	GGATG	7 cut(s)	511, 831, 1255, 1351, 1465, 2564, 2566
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	1946
CciI	TCATGA	1 cut(s)	1738
CfoI	GCGC	2 cut(s)	520, 534
Cfr10I	RCCGGY	2 cut(s)	620, 2243
Cfr13I	GGNCC	6 cut(s)	500, 687, 688, 1158, 1883, 2437
Cfr9I	CCCGGG	1 cut(s)	497
CseI	GACGC	3 cut(s)	233, 274, 1601
Csp6I	GTAC	4 cut(s)	927, 1761, 2205, 2571
CspAI	ACCGGT	1 cut(s)	2243
CviQI	GTAC	4 cut(s)	927, 1761, 2205, 2571
DdeI	CTNAG	6 cut(s)	132, 323, 712, 2148, 2214, 2433
DpnI	GATC	4 cut(s)	831, 1111, 1287, 2416
DpnII	GATC	4 cut(s)	829, 1109, 1285, 2414
DraI	TTTAAA	2 cut(s)	90, 1957
EaeI	YGGCCR	2 cut(s)	1517, 1690
EagI	CGGCCG	1 cut(s)	1690
Eam1104I	CTCTTC	6 cut(s)	92, 407, 471, 522, 1322, 2526
EarI	CTCTTC	6 cut(s)	92, 407, 471, 522, 1322, 2526
EciI	GGCGGA	3 cut(s)	389, 402, 2369
Ecl136II	GAGCTC	3 cut(s)	244, 593, 709
EclXI	CGGCCG	1 cut(s)	1690
Eco130I	CCWWGG	4 cut(s)	219, 691, 1213, 1984
Eco24I	GRGCYC	5 cut(s)	246, 464, 595, 691, 711
Eco47I	GGWCC	3 cut(s)	1158, 1883, 2437
Eco52I	CGGCCG	1 cut(s)	1690
Eco53kI	GAGCTC	3 cut(s)	244, 593, 709
Eco57I	CTGAAG	2 cut(s)	2073, 2357
Eco72I	CACGTG	1 cut(s)	2234
Eco88I	CYCGRG	1 cut(s)	497
EcoICRI	GAGCTC	3 cut(s)	244, 593, 709
EcoNI	CCTNNNNNAGG	1 cut(s)	1244
EcoO109I	RGGNCCY	2 cut(s)	688, 1883
EcoRII	CCWGG	3 cut(s)	147, 246, 1525
EcoT14I	CCWWGG	4 cut(s)	219, 691, 1213, 1984
EcoT22I	ATGCAT	1 cut(s)	2566
EcoT38I	GRGCYC	5 cut(s)	246, 464, 595, 691, 711
ErhI	CCWWGG	4 cut(s)	219, 691, 1213, 1984
Esp3I	CGTCTC	1 cut(s)	1314
FalI	AAGNNNNNCTT	2 cut(s)	1170, 1202
FaqI	GGGAC	2 cut(s)	1144, 1483
FauI	CCCGC	2 cut(s)	527, 1445
FauNDI	CATATG	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	1333
FokI	GGATG	7 cut(s)	518, 838, 1262, 1338, 1472, 2551, 2573
FriOI	GRGCYC	5 cut(s)	246, 464, 595, 691, 711
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	519, 533
GsaI	CCCAGC	2 cut(s)	434, 1504
GsuI	CTGGAG	2 cut(s)	1286, 1837
HaeIII	GGCC	6 cut(s)	502, 575, 689, 1519, 1692, 2537
HgaI	GACGC	3 cut(s)	233, 274, 1601
HhaI	GCGC	2 cut(s)	520, 534
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	2 cut(s)	518, 532
HinP1I	GCGC	2 cut(s)	518, 532
HindIII	AAGCTT	3 cut(s)	252, 1946, 1959
HphI	GGTGA	7 cut(s)	244, 550, 638, 1564, 2076, 2188, 2303
Hpy166II	GTNNAC	5 cut(s)	646, 1334, 2002, 2249, 2333
Hpy188I	TCNGA	7 cut(s)	133, 358, 364, 440, 2011, 2074, 2506
Hpy188III	TCNNGA	5 cut(s)	833, 1319, 1739, 2160, 2330
Hpy8I	GTNNAC	5 cut(s)	646, 1334, 2002, 2249, 2333
Hpy99I	CGWCG	2 cut(s)	368, 2523
HpyAV	CCTTC	8 cut(s)	516, 565, 581, 1250, 1450, 1582, 2048, 2097
HpyCH4III	ACNGT	2 cut(s)	1768, 2204
HpyCH4IV	ACGT	1 cut(s)	2233
HpyF3I	CTNAG	6 cut(s)	132, 323, 712, 2148, 2214, 2433
HpySE526I	ACGT	1 cut(s)	2233
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	2 cut(s)	518, 532
Kzo9I	GATC	4 cut(s)	829, 1109, 1285, 2414
LguI	GCTCTTC	1 cut(s)	522
Lsp1109I	GCAGC	8 cut(s)	354, 357, 477, 499, 1663, 1929, 2410, 2541
LweI	GCATC	6 cut(s)	496, 831, 1609, 2272, 2551, 2573
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	2233
MaeIII	GTNAC	7 cut(s)	1507, 1540, 1570, 1685, 2101, 2176, 2421
MalI	GATC	4 cut(s)	831, 1111, 1287, 2416
MboI	GATC	4 cut(s)	829, 1109, 1285, 2414
MfeI	CAATTG	2 cut(s)	1119, 1825
MflI	RGATCY	3 cut(s)	829, 1109, 2414
MhlI	GDGCHC	9 cut(s)	246, 329, 464, 595, 691, 711, 1037, 1470, 2004
MlyI	GAGTC	6 cut(s)	347, 353, 444, 538, 2173, 2479
MmeI	TCCRAC	6 cut(s)	290, 381, 387, 402, 418, 2328
Mph1103I	ATGCAT	1 cut(s)	2566
MroXI	GAANNNNTTC	1 cut(s)	1185
MslI	CAYNNNNRTG	4 cut(s)	666, 1608, 1989, 1995
MspA1I	CMGCKG	3 cut(s)	348, 490, 1264
MspR9I	CCNGG	9 cut(s)	149, 248, 498, 499, 577, 641, 1527, 2174, 2623
MssI	GTTTAAAC	1 cut(s)	90
MunI	CAATTG	2 cut(s)	1119, 1825
Mva1269I	GAATGC	3 cut(s)	661, 673, 1678
MvaI	CCWGG	3 cut(s)	149, 248, 1527
MvnI	CGCG	4 cut(s)	227, 520, 534, 1452
NciI	CCSGG	6 cut(s)	498, 499, 577, 641, 2174, 2623
NcoI	CCATGG	3 cut(s)	219, 1213, 1984
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	4 cut(s)	829, 1109, 1285, 2414
NlaIV	GGNNCC	7 cut(s)	45, 689, 831, 1160, 1219, 1884, 2242
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	4 cut(s)	1507, 1570, 1685, 2176
NsiI	ATGCAT	1 cut(s)	2566
NspI	RCATGY	3 cut(s)	856, 1994, 2008
NspV	TTCGAA	2 cut(s)	665, 1438
PagI	TCATGA	1 cut(s)	1738
PasI	CCCWGGG	1 cut(s)	148
PciI	ACATGT	1 cut(s)	2004
PciSI	GCTCTTC	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	2 cut(s)	671, 726
PctI	GAATGC	3 cut(s)	661, 673, 1678
PdmI	GAANNNNTTC	1 cut(s)	1185
PflFI	GACNNNGTC	2 cut(s)	547, 635
PflMI	CCANNNNNTGG	1 cut(s)	1526
PfoI	TCCNGGA	2 cut(s)	246, 2621
PinAI	ACCGGT	1 cut(s)	2243
PleI	GAGTC	6 cut(s)	347, 353, 443, 538, 2173, 2479
PmaCI	CACGTG	1 cut(s)	2234
PmeI	GTTTAAAC	1 cut(s)	90
PmlI	CACGTG	1 cut(s)	2234
PpsI	GAGTC	6 cut(s)	347, 353, 443, 538, 2173, 2479
Ppu21I	YACGTR	1 cut(s)	2234
PpuMI	RGGWCCY	1 cut(s)	1883
PscI	ACATGT	1 cut(s)	2004
PshAI	GACNNNNGTC	1 cut(s)	1827
PshBI	ATTAAT	1 cut(s)	1793
Psp124BI	GAGCTC	3 cut(s)	246, 595, 711
Psp5II	RGGWCCY	1 cut(s)	1883
Psp6I	CCWGG	3 cut(s)	147, 246, 1525
PspCI	CACGTG	1 cut(s)	2234
PspFI	CCCAGC	2 cut(s)	430, 1500
PspGI	CCWGG	3 cut(s)	147, 246, 1525
PspN4I	GGNNCC	7 cut(s)	45, 689, 831, 1160, 1219, 1884, 2242
PspOMI	GGGCCC	1 cut(s)	687
PspPI	GGNCC	6 cut(s)	500, 687, 688, 1158, 1883, 2437
PspPPI	RGGWCCY	1 cut(s)	1883
PstI	CTGCAG	3 cut(s)	1681, 1873, 2559
PsuI	RGATCY	3 cut(s)	829, 1109, 2414
PsyI	GACNNNGTC	2 cut(s)	547, 635
PvuII	CAGCTG	2 cut(s)	490, 1264
RsaI	GTAC	4 cut(s)	928, 1762, 2206, 2572
RsaNI	GTAC	4 cut(s)	927, 1761, 2205, 2571
RseI	CAYNNNNRTG	4 cut(s)	666, 1608, 1989, 1995
SacI	GAGCTC	3 cut(s)	246, 595, 711
SapI	GCTCTTC	1 cut(s)	522
Sau3AI	GATC	4 cut(s)	829, 1109, 1285, 2414
Sau96I	GGNCC	6 cut(s)	500, 687, 688, 1158, 1883, 2437
SchI	GAGTC	6 cut(s)	347, 353, 444, 538, 2173, 2479
ScrFI	CCNGG	9 cut(s)	149, 248, 498, 499, 577, 641, 1527, 2174, 2623
SduI	GDGCHC	9 cut(s)	246, 329, 464, 595, 691, 711, 1037, 1470, 2004
SfaNI	GCATC	6 cut(s)	496, 831, 1609, 2272, 2551, 2573
SfcI	CTRYAG	3 cut(s)	1677, 1869, 2555
SfuI	TTCGAA	2 cut(s)	665, 1438
SinI	GGWCC	3 cut(s)	1158, 1883, 2437
SmaI	CCCGGG	1 cut(s)	499
SmiMI	CAYNNNNRTG	4 cut(s)	666, 1608, 1989, 1995
SmlI	CTYRAG	1 cut(s)	1781
SmoI	CTYRAG	1 cut(s)	1781
SpeI	ACTAGT	1 cut(s)	61
SspI	AATATT	1 cut(s)	1972
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	3 cut(s)	246, 595, 711
StyD4I	CCNGG	9 cut(s)	147, 246, 496, 497, 575, 639, 1525, 2172, 2621
StyI	CCWWGG	4 cut(s)	219, 691, 1213, 1984
TaaI	ACNGT	2 cut(s)	1768, 2204
TaiI	ACGT	1 cut(s)	2236
TaqI	TCGA	5 cut(s)	665, 968, 1318, 1438, 1642
TaqII	GACCGA	2 cut(s)	180, 537
TauI	GCSGC	7 cut(s)	285, 304, 351, 384, 387, 472, 512
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	4 cut(s)	1507, 1570, 1685, 2176
TseI	GCWGC	8 cut(s)	342, 345, 487, 490, 1676, 1917, 2398, 2554
Tsp45I	GTSAC	4 cut(s)	1507, 1570, 1685, 2176
TspDTI	ATGAA	7 cut(s)	600, 1178, 1220, 1269, 1908, 2181, 2544
TspGWI	ACGGA	2 cut(s)	301, 1867
TspMI	CCCGGG	1 cut(s)	497
TspRI	CASTG	1 cut(s)	745
Tth111I	GACNNNGTC	2 cut(s)	547, 635
Van91I	CCANNNNNTGG	1 cut(s)	1526
VneI	GTGCAC	1 cut(s)	2000
VpaK11BI	GGWCC	3 cut(s)	1158, 1883, 2437
VspI	ATTAAT	1 cut(s)	1793
XagI	CCTNNNNNAGG	1 cut(s)	1244
XapI	RAATTY	3 cut(s)	75, 170, 1135
XceI	RCATGY	3 cut(s)	856, 1994, 2008
XmaI	CCCGGG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	1333
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	2566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.