Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

76484879 .. 76487144

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG537000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGCCAGCATCAGCCATGGGGAAAAGTAACAACCCTCGTGCCTATGGTCGCCAAAGCTGCACCAAGCAGTTTTGGAAGGCTGGGGAATACGAAGGAGCTCCTCGCAACACCCGCAGACAAATGGATTCTTCTTCCACTAGTGGATTTGATCACGCCAGGATGCACCCCAAGTTTCTGCACTCCAATGCAACGAGTCACAAGTGGGCTCTTGGAGCTTTCGCGGAGCTTTTAGACAATGCACTGGACGAGGTGCACAGCGGTGCTACCTATGTCAATGTAGACGTGCTTGACAACAAGAAAGACCGAAGCAAAATGCTCCTGGTTGAAGACAATGGCGGTGGGATGGACCCGGAGAAGATGAGGAAGTGCATGTCATTGGGGTATTCAGAGAAAAGCAAGATGGCAGACACCATTGGACAGTACGGAAACGGTTTCAAAACAAGTACCATGAGGCTAGGGGCTGACGTCATCGTCTTCTCTCGTAGTGACAGAACTCAGAGCATAGGGTTGTTGTCTTACACTTTCTTGAGGAGCACGGCAAAGGAGGATATTGTAGTTCCCATACTGGACTACGAGAAAAGACGAGGGAATGAAACTTGGGGCAAGATGTTCCGATCCTCAAGCGAAAACTGGGACAAAAGTTTGGAGACAATACTTGAGTGGTCGCCGTTTGAGAGTGAACGAGACTTGGATCATCAGTTTTATATGATGAAGCAGCACGGCACCCGAATAATCATATACAACCTTTGGGAGGACGATGAAGGAAACTTGGAGCTTGACTTGGACACTGAAGCTCATGATATTCAAATGCGAGGCGTGAACCGGGATGAGAAGAACATACAAATGGCTGAACAGTATCCAAACTCTCGTCATTTTTTGACCTACCGCCACTCGTTGAGGAGTTATGCAGCAATTCTCTACTTGCGGCTTCCCACTGACTTTCGAATCATTCTTCGCGGCAAGGATGTTGAGCATCACAACATTTTGAATGATTTGATGTGGTCCGAGAAGATTACGTATAGGCCTAAGCCTATCGAAAAGGAGGAGACATATATAGCGAAGAAAACCAAGAAGGAAAAGAAGGATACAAATATGGTTGCTGAGGTCACTCTTGGGTTTGTGAAAGATGCAAAAAACCATCTTGATGTTCAAGGGTTCAATGTATATCACAGGAATAGGCTGATCACGCCATTTTGGAGGGTGTGGAATGCTGCAGGAAGCGATGGCCGCGGTGTTATAGGTGTTATAGAAGCTGATTATATCAACCCAGCTCATGATAAGCAGGGGTTTGAGCATACCTTACTTCTTGACAGACTCAAGCAAAAGTTGGTAGAAACGCAAAAGGCATACTGGTCTACCAATTGTCACAAAATTGGTTATGCTCCACGCCGCAATGTCAGGGCTATTAATGAAGAAAGGGAAGCTGCTAAGTCAGGTAGCCAGAGACCAGTTTTAGATTCAAATCCAGATGAGTCCTCTTCACGCAAGACACCAGTTTTAGATTCAAATCCAGATGAGTTCCCTTCAAGCAAGAGACCAGTTTTAGATTCAAATCGAGACGAGTCCTCTTCACGAAAGAGACCAGTTTTAGATTCAAATCTAGACAAGTCCTCTTCACGCAAGAGATCACTTCCAGATTCGAATACAAATGAAGCCAAATCCCCCCCACACAAAAGTCAGAAAGTTTCTTCAGACAAATCTCCCAATGGGAATGCGGATATGCACAAGAAAAATACAGTGCAAACAACAACAAAGTCATCAACCCGTCGCCAAGAAATTGTGTTAGGATTAAGCGTAGTGGAGCAACCAAGGAAGGAGAACCAAGGGAATGTAGCTGCTGATGTGCAGACTGAAAGGTGCAAGTCACGAAGAGAAAATGAGGAACTGATTCAATTATTCGCTGATGAGAAAGCACGAGGAGACAATGAGGAAAACAACTTGAAGGAAGAGTTGCGGAATGCATCCAATACCATTCGAGAATTGCGTATACAGCTGCAAAAGGCAAAGGAAGAAATTAAGAAGTTGAACATGCAGCAAGACGAGAGAGCACGACGAAACAAAGAAGAAAACAACTTGCTGCAGAAAGAGTTGCGGGATAAATCCAATCAGCTCGAAAAGGCAAATGAAGAAATTAAGAAATTGAACATGCAGCAAGACGATCTGATTGACATGTTGGCTGAGAGCGAGATGAAGTTGCGGCACTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

736

Amino Acids

84.78

Weight (kDa)

8.84

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	71 - 185	1.6e-19	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	72 - 151	1.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	297 - 451	2.3e-54	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
AatII	GACGTC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	722
AccI	GTMKAC	3 cut(s)	279, 1355, 1987
AccII	CGCG	3 cut(s)	221, 957, 1230
AclWI	GGATC	2 cut(s)	609, 699
AcoI	YGGCCR	1 cut(s)	1225
AcuI	CTGAAG	2 cut(s)	810, 1674
AcyI	GRCGYC	1 cut(s)	465
AfaI	GTAC	2 cut(s)	422, 445
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflIII	ACRYGT	1 cut(s)	2169
AhlI	ACTAGT	1 cut(s)	137
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	155, 318
AleI	CACNNNNGTG	1 cut(s)	258
Alw21I	GWGCWC	4 cut(s)	100, 255, 536, 2050
Alw26I	GTCTC	8 cut(s)	641, 678, 1040, 1438, 1528, 1551, 1573, 1914
Alw44I	GTGCAC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	609, 699
AoxI	GGCC	2 cut(s)	1022, 1225
ApaLI	GTGCAC	1 cut(s)	251
AseI	ATTAAT	1 cut(s)	1407
Asp700I	GAANNNNTTC	1 cut(s)	1887
AspS9I	GGNCC	2 cut(s)	346, 1002
AsuC2I	CCSGG	2 cut(s)	350, 824
AsuII	TTCGAA	2 cut(s)	943, 1640
AvaII	GGWCC	2 cut(s)	346, 1002
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	100, 208
BauI	CACGAG	2 cut(s)	36, 1914
BbsI	GAAGAC	2 cut(s)	333, 466
Bbv12I	GWGCWC	4 cut(s)	100, 255, 536, 2050
BbvCI	CCTCAGC	1 cut(s)	1101
BccI	CCATC	4 cut(s)	337, 394, 1146, 1217
BceAI	ACGGC	3 cut(s)	552, 652, 736
BciT130I	CCWGG	2 cut(s)	157, 320
BciVI	GTATCC	2 cut(s)	867, 1078
BclI	TGATCA	2 cut(s)	148, 1182
BcnI	CCSGG	2 cut(s)	350, 824
BcoDI	GTCTC	8 cut(s)	641, 678, 1040, 1438, 1528, 1551, 1573, 1914
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	138, 455, 1601
BfmI	CTRYAG	2 cut(s)	1212, 2078
BfuI	GTATCC	2 cut(s)	867, 1078
Bme1390I	CCNGG	4 cut(s)	157, 320, 350, 824
Bme18I	GGWCC	2 cut(s)	346, 1002
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	346, 1002
BmiI	GGNNCC	2 cut(s)	348, 724
BmrFI	CCNGG	4 cut(s)	157, 320, 350, 824
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	5 cut(s)	17, 150, 982, 1117, 1970
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	2 cut(s)	333, 466
Bpu10I	CCTNAGC	2 cut(s)	1026, 1101
Bpu14I	TTCGAA	2 cut(s)	943, 1640
BpuEI	CTTGAG	4 cut(s)	547, 604, 677, 1301
BpuMI	CCSGG	2 cut(s)	350, 824
BsaAI	YACGTR	1 cut(s)	1017
BsaBI	GATNNNNATC	4 cut(s)	1461, 1506, 1551, 1596
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	3 cut(s)	1438, 1528, 1573
BsaJI	CCNNGG	4 cut(s)	15, 1228, 1808, 1822
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	8 cut(s)	246, 570, 635, 1355, 1448, 1493, 1538, 1583
Bse3DI	GCAATG	1 cut(s)	1399
Bse8I	GATNNNNATC	4 cut(s)	1461, 1506, 1551, 1596
BseBI	CCWGG	2 cut(s)	157, 320
BseDI	CCNNGG	4 cut(s)	15, 1228, 1808, 1822
BseGI	GGATG	5 cut(s)	165, 348, 832, 970, 1961
BseJI	GATNNNNATC	4 cut(s)	1461, 1506, 1551, 1596
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	1399
BseMII	CTCAG	3 cut(s)	509, 1092, 2169
BseNI	ACTGG	8 cut(s)	246, 570, 635, 1355, 1448, 1493, 1538, 1583
BseRI	GAGGAG	5 cut(s)	90, 544, 913, 1058, 1932
BseSI	GKGCMC	1 cut(s)	255
BseYI	CCCAGC	2 cut(s)	80, 1267
BsgI	GTGCAG	3 cut(s)	43, 161, 1865
Bsh1236I	CGCG	3 cut(s)	221, 957, 1230
BshFI	GGCC	2 cut(s)	1024, 1227
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	4 cut(s)	100, 255, 536, 2050
BsiSI	CCGG	2 cut(s)	350, 823
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	8 cut(s)	641, 678, 1040, 1438, 1528, 1551, 1573, 1914
BsmBI	CGTCTC	1 cut(s)	1551
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	3 cut(s)	1213, 1717, 1963
BsnI	GGCC	2 cut(s)	1024, 1227
Bso31I	GGTCTC	3 cut(s)	1438, 1528, 1573
Bsp119I	TTCGAA	2 cut(s)	943, 1640
Bsp1286I	GDGCHC	5 cut(s)	100, 208, 255, 536, 2050
Bsp143I	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	2 cut(s)	1024, 1227
BspCNI	CTCAG	3 cut(s)	508, 1093, 2170
BspFNI	CGCG	3 cut(s)	221, 957, 1230
BspHI	TCATGA	2 cut(s)	796, 1273
BspLI	GGNNCC	2 cut(s)	348, 724
BspMAI	CTGCAG	2 cut(s)	1216, 2082
BspPI	GGATC	2 cut(s)	609, 699
BspT104I	TTCGAA	2 cut(s)	943, 1640
BspT107I	GGYRCC	1 cut(s)	722
BspTNI	GGTCTC	3 cut(s)	1438, 1528, 1573
BsrDI	GCAATG	1 cut(s)	1399
BsrI	ACTGG	8 cut(s)	246, 570, 635, 1355, 1448, 1493, 1538, 1583
BssECI	CCNNGG	4 cut(s)	15, 1228, 1808, 1822
BssMI	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
BssNAI	GTATAC	1 cut(s)	1988
BssNI	GRCGYC	1 cut(s)	465
BssSI	CACGAG	2 cut(s)	36, 1914
BssT1I	CCWWGG	3 cut(s)	15, 1808, 1822
Bst1107I	GTATAC	1 cut(s)	1988
Bst2BI	CACGAG	2 cut(s)	36, 1914
Bst2UI	CCWGG	2 cut(s)	157, 320
Bst4CI	ACNGT	4 cut(s)	420, 431, 855, 1738
Bst6I	CTCTTC	5 cut(s)	1483, 1573, 1618, 1864, 1941
BstACI	GRCGYC	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	1017
BstBI	TTCGAA	2 cut(s)	943, 1640
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	495, 1026, 1101, 1428, 2178
BstDSI	CCRYGG	2 cut(s)	15, 1228
BstENI	CCTNNNNNAGG	1 cut(s)	749
BstF5I	GGATG	5 cut(s)	165, 348, 832, 970, 1961
BstFNI	CGCG	3 cut(s)	221, 957, 1230
BstKTI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2161
BstMAI	GTCTC	8 cut(s)	641, 678, 1040, 1438, 1528, 1551, 1573, 1914
BstMBI	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 111, 212, 1186, 1227, 1990
BstNI	CCWGG	2 cut(s)	157, 320
BstNSI	RCATGY	4 cut(s)	373, 2032, 2149, 2173
BstSCI	CCNGG	4 cut(s)	155, 318, 348, 822
BstSFI	CTRYAG	2 cut(s)	1212, 2078
BstSLI	GKGCMC	1 cut(s)	255
BstSNI	TACGTA	1 cut(s)	1017
BstUI	CGCG	3 cut(s)	221, 957, 1230
BstV2I	GAAGAC	2 cut(s)	333, 466
BstZ17I	GTATAC	1 cut(s)	1988
BsuI	GTATCC	2 cut(s)	867, 1078
BsuRI	GGCC	2 cut(s)	1024, 1227
BtgI	CCRYGG	2 cut(s)	15, 1228
BtgZI	GCGATG	1 cut(s)	1236
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	165, 348, 832, 970, 1961
BtsIMutI	CAGTG	4 cut(s)	239, 786, 933, 1743
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	796, 1273
Cfr13I	GGNCC	2 cut(s)	346, 1002
Cfr42I	CCGCGG	1 cut(s)	1231
Csp6I	GTAC	2 cut(s)	421, 444
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	8 cut(s)	16, 370, 448, 797, 1274, 2029, 2146, 2170
CviQI	GTAC	2 cut(s)	421, 444
DdeI	CTNAG	5 cut(s)	495, 1026, 1101, 1428, 2178
DpnI	GATC	6 cut(s)	150, 616, 693, 1184, 1627, 2160
DpnII	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	1225
Eam1104I	CTCTTC	5 cut(s)	1483, 1573, 1618, 1864, 1941
EarI	CTCTTC	5 cut(s)	1483, 1573, 1618, 1864, 1941
Ecl136II	GAGCTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	1017
Eco130I	CCWWGG	3 cut(s)	15, 1808, 1822
Eco147I	AGGCCT	1 cut(s)	1024
Eco24I	GRGCYC	2 cut(s)	100, 208
Eco31I	GGTCTC	3 cut(s)	1438, 1528, 1573
Eco47I	GGWCC	2 cut(s)	346, 1002
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	810, 1674
EcoICRI	GAGCTC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	155, 318
EcoT14I	CCWWGG	3 cut(s)	15, 1808, 1822
EcoT22I	ATGCAT	1 cut(s)	1963
EcoT38I	GRGCYC	2 cut(s)	100, 208
ErhI	CCWWGG	3 cut(s)	15, 1808, 1822
Esp3I	CGTCTC	1 cut(s)	1551
FaeI	CATG	8 cut(s)	19, 373, 451, 800, 1277, 2032, 2149, 2173
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	8 cut(s)	15, 369, 447, 796, 1273, 2028, 2145, 2169
FauI	CCCGC	2 cut(s)	119, 2085
FbaI	TGATCA	2 cut(s)	148, 1182
FblI	GTMKAC	3 cut(s)	279, 1355, 1987
FokI	GGATG	5 cut(s)	172, 355, 839, 977, 1948
FriOI	GRGCYC	2 cut(s)	100, 208
FspBI	CTAG	3 cut(s)	138, 455, 1601
GsaI	CCCAGC	2 cut(s)	84, 1271
HaeIII	GGCC	2 cut(s)	1024, 1227
HapII	CCGG	2 cut(s)	350, 823
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	8 cut(s)	19, 373, 451, 800, 1277, 2032, 2149, 2173
HpaII	CCGG	2 cut(s)	350, 823
Hpy166II	GTNNAC	6 cut(s)	253, 280, 680, 820, 1356, 1988
Hpy188I	TCNGA	7 cut(s)	388, 498, 614, 1006, 1680, 1693, 2163
Hpy8I	GTNNAC	6 cut(s)	253, 280, 680, 820, 1356, 1988
Hpy99I	CGWCG	2 cut(s)	1770, 2055
HpyAV	CCTTC	8 cut(s)	70, 86, 755, 1066, 1075, 1533, 1807, 1936
HpyCH4III	ACNGT	4 cut(s)	420, 431, 855, 1738
HpyCH4IV	ACGT	3 cut(s)	282, 465, 1016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 111, 212, 1186, 1227, 1990
HpyF3I	CTNAG	5 cut(s)	495, 1026, 1101, 1428, 2178
HpySE526I	ACGT	3 cut(s)	282, 465, 1016
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	8 cut(s)	19, 373, 451, 800, 1277, 2032, 2149, 2173
Ksp22I	TGATCA	2 cut(s)	148, 1182
KspI	CCGCGG	1 cut(s)	1231
Kzo9I	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
LmnI	GCTCC	9 cut(s)	95, 103, 212, 223, 321, 531, 772, 1387, 1801
LweI	GCATC	5 cut(s)	17, 150, 982, 1117, 1970
MaeI	CTAG	3 cut(s)	138, 455, 1601
MaeII	ACGT	3 cut(s)	282, 465, 1016
MaeIII	GTNAC	6 cut(s)	26, 194, 485, 1105, 1364, 1863
MalI	GATC	6 cut(s)	150, 616, 693, 1184, 1627, 2160
MboI	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
MfeI	CAATTG	1 cut(s)	1360
MhlI	GDGCHC	5 cut(s)	100, 208, 255, 536, 2050
MluCI	AATT	9 cut(s)	912, 1360, 1371, 1776, 1892, 1979, 2013, 2130, 2138
MlyI	GAGTC	4 cut(s)	202, 1308, 1481, 1571
Mph1103I	ATGCAT	1 cut(s)	1963
MroXI	GAANNNNTTC	1 cut(s)	1887
MseI	TTAA	4 cut(s)	1407, 1790, 2016, 2133
MslI	CAYNNNNRTG	4 cut(s)	183, 258, 842, 1143
MspA1I	CMGCKG	3 cut(s)	258, 1230, 1993
MspI	CCGG	2 cut(s)	350, 823
MspR9I	CCNGG	4 cut(s)	157, 320, 350, 824
MunI	CAATTG	1 cut(s)	1360
Mva1269I	GAATGC	3 cut(s)	1213, 1717, 1963
MvaI	CCWGG	2 cut(s)	157, 320
MvnI	CGCG	3 cut(s)	221, 957, 1230
MwoI	GCNNNNNNNGC	6 cut(s)	57, 111, 212, 1186, 1227, 1990
NciI	CCSGG	2 cut(s)	350, 824
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
NlaIII	CATG	8 cut(s)	19, 373, 451, 800, 1277, 2032, 2149, 2173
NlaIV	GGNNCC	2 cut(s)	348, 724
NmuCI	GTSAC	5 cut(s)	194, 485, 1105, 1364, 1863
NsiI	ATGCAT	1 cut(s)	1963
NspI	RCATGY	4 cut(s)	373, 2032, 2149, 2173
NspV	TTCGAA	2 cut(s)	943, 1640
OliI	CACNNNNGTG	1 cut(s)	258
PagI	TCATGA	2 cut(s)	796, 1273
PceI	AGGCCT	1 cut(s)	1024
PciI	ACATGT	1 cut(s)	2169
PcsI	WCGNNNNNNNCGW	1 cut(s)	1981
PctI	GAATGC	3 cut(s)	1213, 1717, 1963
PdmI	GAANNNNTTC	1 cut(s)	1887
PfeI	GAWTC	8 cut(s)	125, 945, 1457, 1502, 1547, 1592, 1637, 1888
PleI	GAGTC	4 cut(s)	201, 1308, 1480, 1570
PpsI	GAGTC	4 cut(s)	201, 1308, 1480, 1570
Ppu21I	YACGTR	1 cut(s)	1017
PscI	ACATGT	1 cut(s)	2169
PshBI	ATTAAT	1 cut(s)	1407
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	155, 318
PspFI	CCCAGC	2 cut(s)	80, 1267
PspGI	CCWGG	2 cut(s)	155, 318
PspN4I	GGNNCC	2 cut(s)	348, 724
PspPI	GGNCC	2 cut(s)	346, 1002
PstI	CTGCAG	2 cut(s)	1216, 2082
PvuII	CAGCTG	1 cut(s)	1993
RsaI	GTAC	2 cut(s)	422, 445
RsaNI	GTAC	2 cut(s)	421, 444
RseI	CAYNNNNRTG	4 cut(s)	183, 258, 842, 1143
SacI	GAGCTC	1 cut(s)	100
SacII	CCGCGG	1 cut(s)	1231
SaqAI	TTAA	4 cut(s)	1407, 1790, 2016, 2133
Sau3AI	GATC	6 cut(s)	148, 614, 691, 1182, 1625, 2158
Sau96I	GGNCC	2 cut(s)	346, 1002
SchI	GAGTC	4 cut(s)	202, 1308, 1481, 1571
ScrFI	CCNGG	4 cut(s)	157, 320, 350, 824
SduI	GDGCHC	5 cut(s)	100, 208, 255, 536, 2050
SfaNI	GCATC	5 cut(s)	17, 150, 982, 1117, 1970
SfcI	CTRYAG	2 cut(s)	1212, 2078
Sfr303I	CCGCGG	1 cut(s)	1231
SfuI	TTCGAA	2 cut(s)	943, 1640
SgrBI	CCGCGG	1 cut(s)	1231
SinI	GGWCC	2 cut(s)	346, 1002
SmiMI	CAYNNNNRTG	4 cut(s)	183, 258, 842, 1143
SmlI	CTYRAG	4 cut(s)	526, 619, 656, 1316
SmoI	CTYRAG	4 cut(s)	526, 619, 656, 1316
SnaBI	TACGTA	1 cut(s)	1017
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	9 cut(s)	912, 1360, 1371, 1776, 1892, 1979, 2013, 2130, 2138
SseBI	AGGCCT	1 cut(s)	1024
SspMI	CTAG	3 cut(s)	138, 455, 1601
SstI	GAGCTC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	1024
StyD4I	CCNGG	4 cut(s)	155, 318, 348, 822
StyI	CCWWGG	3 cut(s)	15, 1808, 1822
TaaI	ACNGT	4 cut(s)	420, 431, 855, 1738
TaiI	ACGT	3 cut(s)	285, 468, 1019
TaqI	TCGA	6 cut(s)	943, 1035, 1555, 1640, 1975, 2112
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	9 cut(s)	912, 1360, 1371, 1776, 1892, 1979, 2013, 2130, 2138
TauI	GCSGC	5 cut(s)	928, 960, 1230, 1392, 2200
TfiI	GAWTC	8 cut(s)	125, 945, 1457, 1502, 1547, 1592, 1637, 1888
Tru1I	TTAA	4 cut(s)	1407, 1790, 2016, 2133
Tru9I	TTAA	4 cut(s)	1407, 1790, 2016, 2133
TscAI	CASTG	4 cut(s)	246, 793, 940, 1743
TseFI	GTSAC	5 cut(s)	194, 485, 1105, 1364, 1863
Tsp45I	GTSAC	5 cut(s)	194, 485, 1105, 1364, 1863
TspDTI	ATGAA	7 cut(s)	606, 725, 774, 1425, 1665, 2139, 2204
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	4 cut(s)	246, 793, 940, 1743
VneI	GTGCAC	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	346, 1002
VspI	ATTAAT	1 cut(s)	1407
XagI	CCTNNNNNAGG	1 cut(s)	749
XbaI	TCTAGA	1 cut(s)	1600
XceI	RCATGY	4 cut(s)	373, 2032, 2149, 2173
XmiI	GTMKAC	3 cut(s)	279, 1355, 1987
XmnI	GAANNNNTTC	1 cut(s)	1887
XspI	CTAG	3 cut(s)	138, 455, 1601
ZraI	GACGTC	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	1963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.