Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

24524775 .. 24531062

Gene Structure 6288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1151900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGAACGCGAGGGTGAAGCAGGAGCTTCTCGAAGCTTCGTTTATTCCAACGCCGAAGCGAACCGGCATCGGTTGTAAGTTGCCCCCGGATTCGGTAATTTGCCTAAGCACGAGTAGCGACAGCAGCAGCAGCAGCGACTCCGACTCCGACGATTCAGCGGATGGAGGCGGCGGCGCTTCGGGGGGTTTGGCGAAGAAGAGGAAGTTGGACGGGATGGGAGTTGGATTTCCGGTTGGGTTTTTGAACCCTCTGCCTCCGGAGGAAGTGGGGCGGCTGCTTCCCGCGCCGGAGGCGGCGGTTGCGCGGAGGAAAGAGGGCAGGGTTGTCAGTCGGTCGAACTGTAAGCAGTTTTGGAAGGCTGGGGATTATGAAGGAGCACCTTGTGCCAATTGGGATTCTTCTGCCGGTGGGATAGACCATGTCCGGGTTCACCCGAAGTTTCTGCATTCGAATGCTACGAGCCATAAGTGGGCTCTTGGAGCTTTCGCGGAGCTCTTGGACAATGCATTGGACGAGGTGTGCAGTGGTGCTACATATGTTAATGTAGATATGCTAGAAAATAAGAAAGACAGAAGCAGAATGTTGCTAATTGAAGATAATGGGGGTGGGATGGATCCAGATAAGATGCGACATTGCATGTCATTGGGGTATTCTGCGAAAAGCAAAGTTGCAAACACTATTGGACAATATGGAAATGGCTTTAAGACAAGTACCATGAGGCTTGGAGCAGATGTAATTGTGTTCTCTCGTTCTAGTGGAAAAGATGGAAAAAGTGCTACACAGAGCATTGGATTGCTGTCTTACACATTTTTGACAAGCACGGGAAAGGAAGATATTGTAGTTCCCATGCTTGATTATGAGAGAGGACAAGGGACTTGGAACAAGATGTTAAGATCCTCTTCAAGTGATTGGGATAAGAATTTGGAAACAATAGTTGAATGGGCACCATTTTTTGACGAAGAAGACCTGCATCATCAGTTCTATATGATGAAAAACCATGGAACCCGAATAATCATCTACAACCTTTGGGAGGATGATGAAGGACAGCTGGAGCTTGATTTCGAAGCTGATCCACATGATATTCAAATTAGAGGTGTTAATCGAGACGAGAAGAGTATACAAATGGCAAAAGACTACCCCAATTCTCGTTTTTTCTTGACCTACCAGCACTCATTGAGGAGCTATGTATCAATTCTCTATTTGCGGCTTCCTCATAACTTCCGAATTATTCTTCGTGGGAAGGATGTTGAGCACCACAACATAGTCAATGATATGATGTTGTCTCAGCAAGTCACATATCGGCCACAGCCTGGTCTTGATGGGGTTCCAAAGGAATTAAATATGGTTGCTGTTGTCACCATTGGTTTTGTGAAGGATGCAAAACATCATATTGATGTTCAAGGGTTTAATGTATATCACAAGAATCGACTGATTAAGCCATTTTGGAGGCTTTGGAATGCTGCTGGAAGTGATGGCCGTGGTGTTATAGGTCTTTTAGAAGCTAATTTTGTTGAACCAGCTCATGATAAGCAGGGGTTTGAGCGTACAACAGTTCTTCAAAGACTCGAGGGAAAATTAATAGCTATGCAAAAGACTTACTGGAGAAACAATTGTCATAGAATCGGCTATGCTCCACGTAATAAGAATGCCTCAGCAGATAAAGAGGGTTCTCCCTATGAAACAAATGGTAAAACATCAGGCAGCAAGAAACCAGTTAAAGGTTCCGGCAAGCTCCATTCCAGAACTTCAAAAGATATTCCTACTTATCATGGGCATGTGAATGTACACATGTCTGATAAAGCCACAAATAGAGTGCAATCCCCCTCAAAATCAGGGGAAGGATCGTCAAGTTCTTCTGAACCATCATCACCTTCGGCAGTCAATGTTACTGATAAACAAGTGAATGGCAGTAGTAGTAAGGCATTTTCTGCTAAGAAAGACTCTGGAAAAGGTGGCCCAGTGACTCGGTTATCTTCACGTGTGGACAGTACTCAGCAAGATTATTCACCGCATGCAGGAACCAGTTTACCCACCCGAAGTTCCAAGTCAAGGGGGAATGATGTCAATGGTGATTTAGGCGTTTTGGAGCAATTGAGAAAAGAGAATCATGAACTGAAAGAAAGGTTGGAGGCGATAAAGGACAGAGGAGCTTCTGCTGATTGGGAGCAGGCATTGCAGCGTGAAAAGGATAGGTCCAAATCACTTGAAACCCAGCTCCAAACGGCACAAGAAAAAATTGTGGAAATGAACAAAGAACAAGACACTCTAATTGGCATATTCTCCGAGGAAAGGGAGCGACGAGACAATGAAGAGGCCACTTTGAGAAAGAAGCTGGAGGATGCATCCAGTACCATTCAGTTATTGCTTGACAAGGTAAGGAAACTGGAAGCAACGAAGTCCGGGAACCTCAAATCCAATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

808

Amino Acids

89.49

Weight (kDa)

8.68

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	160 - 257	4.2e-17	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	390 - 534	3.7e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	975
AccB1I	GGYRCC	1 cut(s)	943
AccB7I	CCANNNNNTGG	1 cut(s)	1310
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	4 cut(s)	8, 284, 304, 488
AccIII	TCCGGA	1 cut(s)	256
AclWI	GGATC	5 cut(s)	608, 621, 888, 1064, 1849
AcoI	YGGCCR	2 cut(s)	1301, 1474
AcsI	RAATTY	1 cut(s)	919
AcvI	CACGTG	1 cut(s)	1979
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	5 cut(s)	712, 1546, 1785, 1990, 2350
AfiI	CCNNNNNNNGG	9 cut(s)	91, 424, 469, 1030, 1310, 1718, 2015, 2049, 2289
AflIII	ACRYGT	2 cut(s)	1788, 1978
AjnI	CCWGG	1 cut(s)	1309
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 2108, 2140
AloI	GAACNNNNNNTCC	1 cut(s)	2396
Alw21I	GWGCWC	3 cut(s)	379, 495, 1254
Alw26I	GTCTC	3 cut(s)	1098, 1287, 2295
AlwI	GGATC	5 cut(s)	608, 621, 888, 1064, 1849
Ama87I	CYCGRG	1 cut(s)	1565
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	4 cut(s)	1301, 1474, 1954, 2313
ApeKI	GCWGC	8 cut(s)	123, 126, 129, 132, 274, 1460, 1701, 2176
ApoI	RAATTY	1 cut(s)	919
AseI	ATTAAT	1 cut(s)	1577
AspLEI	GCGC	3 cut(s)	176, 286, 304
AspS9I	GGNCC	2 cut(s)	1955, 2193
AsuC2I	CCSGG	3 cut(s)	86, 425, 2401
AsuHPI	GGTGA	6 cut(s)	25, 422, 1348, 1860, 1998, 2081
AsuII	TTCGAA	2 cut(s)	449, 1062
AvaI	CYCGRG	1 cut(s)	1565
AvaII	GGWCC	1 cut(s)	2193
BaeGI	GKGCMC	1 cut(s)	946
BamHI	GGATCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	943
BanII	GRGCYC	2 cut(s)	475, 495
BauI	CACGAG	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	1979
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	3 cut(s)	379, 495, 1254
BbvCI	CCTCAGC	1 cut(s)	1651
BbvI	GCAGC	8 cut(s)	135, 138, 141, 144, 261, 1447, 1713, 2188
BccI	CCATC	7 cut(s)	155, 208, 604, 758, 1313, 1466, 1870
BceAI	ACGGC	2 cut(s)	1461, 2238
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	1311
BcnI	CCSGG	3 cut(s)	86, 425, 2401
BcoDI	GTCTC	3 cut(s)	1098, 1287, 2295
BfaI	CTAG	2 cut(s)	554, 753
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	975
BmcAI	AGTACT	1 cut(s)	1990
Bme1390I	CCNGG	4 cut(s)	86, 425, 1311, 2401
Bme18I	GGWCC	1 cut(s)	2193
BmeT110I	CYCGRG	1 cut(s)	1565
BmgT120I	GGNCC	2 cut(s)	1955, 2193
BmiI	GGNNCC	7 cut(s)	615, 945, 1003, 1326, 1723, 2020, 2405
BmrFI	CCNGG	4 cut(s)	86, 425, 1311, 2401
BmrI	ACTGGG	1 cut(s)	1952
BmsI	GCATC	6 cut(s)	75, 615, 979, 1366, 2329, 2351
BmuI	ACTGGG	1 cut(s)	1952
BpiI	GAAGAC	1 cut(s)	969
BpmI	CTGGAG	3 cut(s)	1070, 1621, 2354
Bpu10I	CCTNAGC	2 cut(s)	104, 1651
Bpu14I	TTCGAA	2 cut(s)	449, 1062
BpuMI	CCSGG	3 cut(s)	86, 425, 2401
BsaAI	YACGTR	2 cut(s)	1637, 1979
BsaJI	CCNNGG	4 cut(s)	84, 997, 1477, 2283
BsaWI	WCCGGW	2 cut(s)	229, 256
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 717, 747
Bsc4I	CCNNNNNNNGG	9 cut(s)	91, 424, 469, 1030, 1310, 1718, 2015, 2049, 2289
Bse118I	RCCGGY	2 cut(s)	62, 404
Bse1I	ACTGG	6 cut(s)	1604, 1712, 1958, 2022, 2346, 2388
Bse3DI	GCAATG	2 cut(s)	631, 2171
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	1311
BseDI	CCNNGG	4 cut(s)	84, 997, 1477, 2283
BseGI	GGATG	8 cut(s)	166, 219, 615, 1039, 1249, 1381, 2342, 2344
BseLI	CCNNNNNNNGG	9 cut(s)	91, 424, 469, 1030, 1310, 1718, 2015, 2049, 2289
BseMI	GCAATG	2 cut(s)	631, 2171
BseMII	CTCAG	3 cut(s)	1298, 1665, 2006
BseNI	ACTGG	6 cut(s)	1604, 1712, 1958, 2022, 2346, 2388
BseRI	GAGGAG	2 cut(s)	1192, 2160
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	8 cut(s)	135, 138, 141, 144, 261, 1447, 1713, 2188
BseYI	CCCAGC	2 cut(s)	359, 2211
BsgI	GTGCAG	1 cut(s)	541
Bsh1236I	CGCG	4 cut(s)	8, 284, 304, 488
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	4 cut(s)	1303, 1476, 1956, 2315
BshNI	GGYRCC	1 cut(s)	943
BsiEI	CGRYCG	1 cut(s)	335
BsiHKAI	GWGCWC	3 cut(s)	379, 495, 1254
BsiHKCI	CYCGRG	1 cut(s)	1565
BsiSI	CCGG	9 cut(s)	63, 86, 230, 257, 287, 405, 424, 1725, 2400
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	9 cut(s)	91, 424, 469, 1030, 1310, 1718, 2015, 2049, 2289
BsmAI	GTCTC	3 cut(s)	1098, 1287, 2295
BsmBI	CGTCTC	1 cut(s)	1098
BsmFI	GGGAC	1 cut(s)	886
BsmI	GAATGC	4 cut(s)	445, 457, 1462, 1651
BsnI	GGCC	4 cut(s)	1303, 1476, 1956, 2315
BsoBI	CYCGRG	1 cut(s)	1565
Bsp119I	TTCGAA	2 cut(s)	449, 1062
Bsp1286I	GDGCHC	5 cut(s)	379, 475, 495, 946, 1254
Bsp13I	TCCGGA	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	1783
Bsp143I	GATC	4 cut(s)	613, 893, 1069, 1841
Bsp19I	CCATGG	1 cut(s)	997
BspANI	GGCC	4 cut(s)	1303, 1476, 1956, 2315
BspCNI	CTCAG	3 cut(s)	1297, 1664, 2005
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	4 cut(s)	8, 284, 304, 488
BspHI	TCATGA	2 cut(s)	1522, 2107
BspLI	GGNNCC	7 cut(s)	615, 945, 1003, 1326, 1723, 2020, 2405
BspMI	ACCTGC	1 cut(s)	975
BspPI	GGATC	5 cut(s)	608, 621, 888, 1064, 1849
BspT104I	TTCGAA	2 cut(s)	449, 1062
BspT107I	GGYRCC	1 cut(s)	943
BsrDI	GCAATG	2 cut(s)	631, 2171
BsrFI	RCCGGY	2 cut(s)	62, 404
BsrGI	TGTACA	1 cut(s)	1783
BsrI	ACTGG	6 cut(s)	1604, 1712, 1958, 2022, 2346, 2388
BssAI	RCCGGY	2 cut(s)	62, 404
BssECI	CCNNGG	4 cut(s)	84, 997, 1477, 2283
BssMI	GATC	4 cut(s)	613, 893, 1069, 1841
BssNAI	GTATAC	1 cut(s)	1118
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	997
Bst1107I	GTATAC	1 cut(s)	1118
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	1311
Bst4CI	ACNGT	3 cut(s)	341, 1552, 1988
Bst6I	CTCTTC	4 cut(s)	191, 904, 1106, 2304
BstAPI	GCANNNNNTGC	3 cut(s)	383, 1928, 2173
BstAUI	TGTACA	1 cut(s)	1783
BstBAI	YACGTR	2 cut(s)	1637, 1979
BstBI	TTCGAA	2 cut(s)	449, 1062
BstC8I	GCNNGC	3 cut(s)	1730, 2013, 2169
BstDEI	CTNAG	5 cut(s)	104, 1284, 1651, 1932, 1992
BstDSI	CCRYGG	2 cut(s)	997, 1477
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	8 cut(s)	166, 219, 615, 1039, 1249, 1381, 2342, 2344
BstFNI	CGCG	4 cut(s)	8, 284, 304, 488
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	176, 286, 304
BstKTI	GATC	4 cut(s)	616, 896, 1072, 1844
BstMAI	GTCTC	3 cut(s)	1098, 1287, 2295
BstMBI	GATC	4 cut(s)	613, 893, 1069, 1841
BstMCI	CGRYCG	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	1311
BstNSI	RCATGY	4 cut(s)	640, 1778, 1792, 2015
BstSCI	CCNGG	4 cut(s)	84, 423, 1309, 2399
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	4 cut(s)	8, 284, 304, 488
BstV1I	GCAGC	8 cut(s)	135, 138, 141, 144, 261, 1447, 1713, 2188
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	2 cut(s)	613, 893
BstYI	RGATCY	2 cut(s)	613, 893
BstZ17I	GTATAC	1 cut(s)	1118
BsuRI	GGCC	4 cut(s)	1303, 1476, 1956, 2315
BtgI	CCRYGG	2 cut(s)	997, 1477
BtsCI	GGATG	8 cut(s)	166, 219, 615, 1039, 1249, 1381, 2342, 2344
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	529, 1965
BveI	ACCTGC	1 cut(s)	975
Cac8I	GCNNGC	3 cut(s)	1730, 2013, 2169
CciI	TCATGA	2 cut(s)	1522, 2107
CfoI	GCGC	3 cut(s)	176, 286, 304
Cfr10I	RCCGGY	2 cut(s)	62, 404
Cfr13I	GGNCC	2 cut(s)	1955, 2193
Csp6I	GTAC	5 cut(s)	711, 1545, 1784, 1989, 2349
CviQI	GTAC	5 cut(s)	711, 1545, 1784, 1989, 2349
DdeI	CTNAG	5 cut(s)	104, 1284, 1651, 1932, 1992
DpnI	GATC	4 cut(s)	615, 895, 1071, 1843
DpnII	GATC	4 cut(s)	613, 893, 1069, 1841
DraIII	CACNNNGTG	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	1301, 1474
Eam1104I	CTCTTC	4 cut(s)	191, 904, 1106, 2304
EarI	CTCTTC	4 cut(s)	191, 904, 1106, 2304
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	997
Eco24I	GRGCYC	2 cut(s)	475, 495
Eco47I	GGWCC	1 cut(s)	2193
Eco53kI	GAGCTC	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	1979
Eco88I	CYCGRG	1 cut(s)	1565
EcoICRI	GAGCTC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	1309
EcoT14I	CCWWGG	1 cut(s)	997
EcoT22I	ATGCAT	2 cut(s)	508, 2344
EcoT38I	GRGCYC	2 cut(s)	475, 495
ErhI	CCWWGG	1 cut(s)	997
Esp3I	CGTCTC	1 cut(s)	1098
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FaqI	GGGAC	1 cut(s)	886
FauI	CCCGC	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	1117
FokI	GGATG	8 cut(s)	173, 226, 622, 1046, 1256, 1388, 2329, 2351
FriOI	GRGCYC	2 cut(s)	475, 495
FspBI	CTAG	2 cut(s)	554, 753
GlaI	GCGC	3 cut(s)	175, 285, 303
GsaI	CCCAGC	2 cut(s)	363, 2215
GsuI	CTGGAG	3 cut(s)	1070, 1621, 2354
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	1303, 1476, 1956, 2315
HapII	CCGG	9 cut(s)	63, 86, 230, 257, 287, 405, 424, 1725, 2400
HhaI	GCGC	3 cut(s)	176, 286, 304
Hin6I	GCGC	3 cut(s)	174, 284, 302
HinP1I	GCGC	3 cut(s)	174, 284, 302
HindIII	AAGCTT	1 cut(s)	33
HpaII	CCGG	9 cut(s)	63, 86, 230, 257, 287, 405, 424, 1725, 2400
HphI	GGTGA	6 cut(s)	25, 422, 1348, 1860, 1998, 2081
Hpy166II	GTNNAC	5 cut(s)	430, 1118, 1786, 1984, 2027
Hpy188I	TCNGA	6 cut(s)	142, 148, 1223, 1795, 1858, 2284
Hpy8I	GTNNAC	5 cut(s)	430, 1118, 1786, 1984, 2027
Hpy99I	CGWCG	2 cut(s)	152, 2301
HpyAV	CCTTC	7 cut(s)	349, 365, 1034, 1234, 1366, 1832, 1881
HpyCH4III	ACNGT	3 cut(s)	341, 1552, 1988
HpyCH4IV	ACGT	2 cut(s)	1636, 1978
HpyF3I	CTNAG	5 cut(s)	104, 1284, 1651, 1932, 1992
HpySE526I	ACGT	2 cut(s)	1636, 1978
HspAI	GCGC	3 cut(s)	174, 284, 302
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	613, 893, 1069, 1841
Lsp1109I	GCAGC	8 cut(s)	135, 138, 141, 144, 261, 1447, 1713, 2188
LweI	GCATC	6 cut(s)	75, 615, 979, 1366, 2329, 2351
MaeI	CTAG	2 cut(s)	554, 753
MaeII	ACGT	2 cut(s)	1636, 1978
MaeIII	GTNAC	4 cut(s)	1291, 1354, 1885, 1960
MalI	GATC	4 cut(s)	615, 895, 1071, 1843
MboI	GATC	4 cut(s)	613, 893, 1069, 1841
MfeI	CAATTG	3 cut(s)	388, 1609, 2090
MflI	RGATCY	2 cut(s)	613, 893
MhlI	GDGCHC	5 cut(s)	379, 475, 495, 946, 1254
MlyI	GAGTC	5 cut(s)	131, 137, 1557, 1934, 1957
MmeI	TCCRAC	6 cut(s)	71, 165, 171, 186, 202, 2106
Mph1103I	ATGCAT	2 cut(s)	508, 2344
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	9 cut(s)	540, 702, 890, 1098, 1337, 1407, 1434, 1577, 1716
MslI	CAYNNNNRTG	4 cut(s)	450, 1392, 1773, 1779
MspA1I	CMGCKG	2 cut(s)	158, 1048
MspI	CCGG	9 cut(s)	63, 86, 230, 257, 287, 405, 424, 1725, 2400
MspR9I	CCNGG	4 cut(s)	86, 425, 1311, 2401
MunI	CAATTG	3 cut(s)	388, 1609, 2090
Mva1269I	GAATGC	4 cut(s)	445, 457, 1462, 1651
MvaI	CCWGG	1 cut(s)	1311
MvnI	CGCG	4 cut(s)	8, 284, 304, 488
NciI	CCSGG	3 cut(s)	86, 425, 2401
NcoI	CCATGG	1 cut(s)	997
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	613, 893, 1069, 1841
NlaIV	GGNNCC	7 cut(s)	615, 945, 1003, 1326, 1723, 2020, 2405
NmuCI	GTSAC	3 cut(s)	1291, 1354, 1960
NsiI	ATGCAT	2 cut(s)	508, 2344
NspI	RCATGY	4 cut(s)	640, 1778, 1792, 2015
NspV	TTCGAA	2 cut(s)	449, 1062
PaeI	GCATGC	1 cut(s)	2015
PaeR7I	CTCGAG	1 cut(s)	1565
PagI	TCATGA	2 cut(s)	1522, 2107
PciI	ACATGT	1 cut(s)	1788
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PctI	GAATGC	4 cut(s)	445, 457, 1462, 1651
PfeI	GAWTC	6 cut(s)	89, 152, 395, 1423, 1620, 2104
PflFI	GACNNNGTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	1310
PfoI	TCCNGGA	1 cut(s)	2399
PleI	GAGTC	5 cut(s)	131, 137, 1557, 1934, 1957
PmaCI	CACGTG	1 cut(s)	1979
PmlI	CACGTG	1 cut(s)	1979
PpsI	GAGTC	5 cut(s)	131, 137, 1557, 1934, 1957
Ppu21I	YACGTR	2 cut(s)	1637, 1979
PscI	ACATGT	1 cut(s)	1788
PshBI	ATTAAT	1 cut(s)	1577
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	1309
PspCI	CACGTG	1 cut(s)	1979
PspFI	CCCAGC	2 cut(s)	359, 2211
PspGI	CCWGG	1 cut(s)	1309
PspN4I	GGNNCC	7 cut(s)	615, 945, 1003, 1326, 1723, 2020, 2405
PspPI	GGNCC	2 cut(s)	1955, 2193
PspXI	VCTCGAGB	1 cut(s)	1565
PsuI	RGATCY	2 cut(s)	613, 893
PsyI	GACNNNGTC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	1048
RsaI	GTAC	5 cut(s)	712, 1546, 1785, 1990, 2350
RsaNI	GTAC	5 cut(s)	711, 1545, 1784, 1989, 2349
RseI	CAYNNNNRTG	4 cut(s)	450, 1392, 1773, 1779
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	9 cut(s)	540, 702, 890, 1098, 1337, 1407, 1434, 1577, 1716
Sau3AI	GATC	4 cut(s)	613, 893, 1069, 1841
Sau96I	GGNCC	2 cut(s)	1955, 2193
ScaI	AGTACT	1 cut(s)	1990
SchI	GAGTC	5 cut(s)	131, 137, 1557, 1934, 1957
ScrFI	CCNGG	4 cut(s)	86, 425, 1311, 2401
SduI	GDGCHC	5 cut(s)	379, 475, 495, 946, 1254
SfaNI	GCATC	6 cut(s)	75, 615, 979, 1366, 2329, 2351
Sfr274I	CTCGAG	1 cut(s)	1565
SfuI	TTCGAA	2 cut(s)	449, 1062
SinI	GGWCC	1 cut(s)	2193
SlaI	CTCGAG	1 cut(s)	1565
SmiMI	CAYNNNNRTG	4 cut(s)	450, 1392, 1773, 1779
SmlI	CTYRAG	1 cut(s)	1565
SmoI	CTYRAG	1 cut(s)	1565
SphI	GCATGC	1 cut(s)	2015
SspMI	CTAG	2 cut(s)	554, 753
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	4 cut(s)	84, 423, 1309, 2399
StyI	CCWWGG	1 cut(s)	997
TaaI	ACNGT	3 cut(s)	341, 1552, 1988
TaiI	ACGT	2 cut(s)	1639, 1981
TaqI	TCGA	7 cut(s)	30, 335, 449, 1062, 1102, 1426, 1566
TaqII	GACCGA	1 cut(s)	321
TatI	WGTACW	2 cut(s)	1783, 1988
TauI	GCSGC	5 cut(s)	171, 174, 274, 296, 1207
TfiI	GAWTC	6 cut(s)	89, 152, 395, 1423, 1620, 2104
Tru1I	TTAA	9 cut(s)	540, 702, 890, 1098, 1337, 1407, 1434, 1577, 1716
Tru9I	TTAA	9 cut(s)	540, 702, 890, 1098, 1337, 1407, 1434, 1577, 1716
TscAI	CASTG	2 cut(s)	529, 1965
TseFI	GTSAC	3 cut(s)	1291, 1354, 1960
TseI	GCWGC	8 cut(s)	123, 126, 129, 132, 274, 1460, 1701, 2176
Tsp45I	GTSAC	3 cut(s)	1291, 1354, 1960
TspDTI	ATGAA	8 cut(s)	17, 384, 1004, 1053, 1692, 2124, 2261, 2322
TspRI	CASTG	2 cut(s)	529, 1965
Tth111I	GACNNNGTC	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	1310
VpaK11BI	GGWCC	1 cut(s)	2193
VspI	ATTAAT	1 cut(s)	1577
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	1 cut(s)	919
XceI	RCATGY	4 cut(s)	640, 1778, 1792, 2015
XhoI	CTCGAG	1 cut(s)	1565
XmiI	GTMKAC	1 cut(s)	1117
XspI	CTAG	2 cut(s)	554, 753
ZrmI	AGTACT	1 cut(s)	1990
Zsp2I	ATGCAT	2 cut(s)	508, 2344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.