Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

60284729 .. 60285856

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0471200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCGAAAGCAAAAGTTTTTTAGACTGAATGGTGGTTTGTTGTTGGAGCAACAGTTATCTTCTGGCGAAGTCAATGTTGAGAAGATTAAGCTGTTCAATGCAAAGGAGTTAGAGATAGCCACAGACCGGTTTAATGTACACAGAATTCTTGGTGAAGGAGGCCGAGGTACTGTTTATAAAGGAATGTTGACAGATGGAAGAGATGTTGCTGTCAAGAAGTCAAAAGTAGTAGATGGAGGAGAAGTGAGTCAATTCATTAATGAGATTGTCATTCTTTCACAAATTAACCACAGGAATGTGGTTAAACTCTTGGGATGCTGTTTAGAGAGCGAAGTTCCCCTATTGGTCTATGAATTTTTACCCAACGGAACCCTTTCTCAATACATTCAGAGCCGTGATGAGGATTTTCCTCTAACTTGGGAAATGCGATTACGAGTTGGTACCGAAGTTGCTGGAGCCCTTTCCTACTTACATTCATCTGTTTCAATGCCCATTTACCATCGAGACATTAAGTCTTCAAACATACTCTTGGATGATAAATATAGAGCAAAAGTTGCAGACTTTGGGACATCAAGAACTGTTTCCATTGACAAAACACATCTTACCATGACACATGTAAACGGAACATTTGGTTATTTGGACCCTGAGTACTTCCAGTCTAGCCAATTTACAGACAAGAGCGACGTTTACAGCTTCGGAGTAGTCCTTGCCGAACTCTTGACTGGACAAAAACCAGTTTCTGTAACAAGATCGCAGGAAGGGAAACAAGATGGGAGAAGCCTAGCAACACATTTTATTGTGTCCATGGAGGAGAGTTGTTTGTTTGATATTCTTGATGCTGAAGTTATGAAGGGAGGTAAGAAAGAAGAGATAGTGGCGGTTGCTAATCTTGCAAAACGTTGCTTGAATATGAAAGGAAAGAAGCGTCCAGCTATGAAAGAAATAGCAGTTAAGTTGGAGGAAATTCTAATGTCAAGTAAATCTTCTGATGTCGAACACATTGCAAAGGTTGAACATGTCCAGACGGAAATAGCCGAGGTTTGGGATGTTTCTACATCAACAGGCTCTCATATGGACACCGGTTCTTCATTAGATGGACAACCACTGCTGTCTTTCAAGTCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

375

Amino Acids

41.81

Weight (kDa)

6.39

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 315	2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	46 - 319	1.1e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	1 cut(s)	878
AclI	AACGTT	1 cut(s)	898
AcsI	RAATTY	3 cut(s)	144, 353, 963
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	4 cut(s)	138, 169, 442, 650
AfiI	CCNNNNNNNGG	3 cut(s)	126, 400, 1041
AflIII	ACRYGT	2 cut(s)	613, 1015
AgeI	ACCGGT	2 cut(s)	126, 1079
AgsI	TTSAA	6 cut(s)	97, 486, 519, 907, 1013, 1117
AhdI	GACNNNNNGTC	1 cut(s)	511
AluBI	AGCT	3 cut(s)	91, 693, 932
AluI	AGCT	3 cut(s)	91, 693, 932
Alw26I	GTCTC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	3 cut(s)	144, 353, 963
AseI	ATTAAT	1 cut(s)	258
AsiGI	ACCGGT	2 cut(s)	126, 1079
Asp700I	GAANNNNTTC	2 cut(s)	373, 580
Asp718I	GGTACC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	507
BccI	CCATC	5 cut(s)	188, 227, 507, 764, 1088
BceAI	ACGGC	1 cut(s)	378
BcgI	CGANNNNNNTGC	2 cut(s)	983, 1017
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	660, 782
BmcAI	AGTACT	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	370, 442, 457, 642
BmsI	GCATC	2 cut(s)	305, 826
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	163, 804, 1035
BsaWI	WCCGGW	2 cut(s)	126, 1079
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 400, 1041
Bse118I	RCCGGY	2 cut(s)	126, 1079
Bse1I	ACTGG	3 cut(s)	655, 727, 734
Bse3DI	GCAATG	1 cut(s)	999
BseDI	CCNNGG	3 cut(s)	163, 804, 1035
BseGI	GGATG	3 cut(s)	320, 538, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	126, 400, 1041
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	3 cut(s)	655, 727, 734
BseRI	GAGGAG	2 cut(s)	252, 824
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	440
BshTI	ACCGGT	2 cut(s)	126, 1079
BsiSI	CCGG	2 cut(s)	127, 1080
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	3 cut(s)	126, 400, 1041
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	749
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	637
BspLI	GGNNCC	4 cut(s)	370, 442, 457, 642
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	999
BsrFI	RCCGGY	2 cut(s)	126, 1079
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	655, 727, 734
BssAI	RCCGGY	2 cut(s)	126, 1079
BssECI	CCNNGG	3 cut(s)	163, 804, 1035
BssMI	GATC	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	804
Bst4CI	ACNGT	3 cut(s)	54, 172, 580
Bst6I	CTCTTC	2 cut(s)	193, 861
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	3 cut(s)	320, 538, 1051
BstKTI	GATC	1 cut(s)	752
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	749
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 890
BstNSI	RCATGY	2 cut(s)	617, 1019
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	3 cut(s)	320, 538, 1051
BtsI	GCAGTG	1 cut(s)	1103
BtsIMutI	CAGTG	1 cut(s)	1103
CaiI	CAGNNNCTG	1 cut(s)	740
Cfr10I	RCCGGY	2 cut(s)	126, 1079
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	914
Csp6I	GTAC	4 cut(s)	137, 168, 441, 649
CspAI	ACCGGT	2 cut(s)	126, 1079
CviAII	CATG	4 cut(s)	607, 614, 805, 1016
CviQI	GTAC	4 cut(s)	137, 168, 441, 649
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	1 cut(s)	751
DpnII	GATC	1 cut(s)	749
DriI	GACNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	193, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	2 cut(s)	193, 861
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	4 cut(s)	610, 617, 808, 1019
FalI	AAGNNNNNCTT	2 cut(s)	967, 999
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	4 cut(s)	606, 613, 804, 1015
FauNDI	CATATG	1 cut(s)	1071
FokI	GGATG	3 cut(s)	327, 545, 1058
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	2 cut(s)	660, 782
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	127, 1080
HgaI	GACGC	1 cut(s)	914
Hin1II	CATG	4 cut(s)	610, 617, 808, 1019
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	127, 1080
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	139, 189, 619, 688
Hpy188I	TCNGA	3 cut(s)	390, 698, 988
Hpy188III	TCNNGA	6 cut(s)	214, 503, 573, 718, 833, 1021
Hpy8I	GTNNAC	4 cut(s)	139, 189, 619, 688
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	149, 752, 844
HpyCH4III	ACNGT	3 cut(s)	54, 172, 580
HpyCH4IV	ACGT	2 cut(s)	684, 898
HpyCH4V	TGCA	4 cut(s)	101, 557, 893, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 890
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	2 cut(s)	684, 898
Hsp92II	CATG	4 cut(s)	610, 617, 808, 1019
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	749
LmnI	GCTCC	2 cut(s)	46, 455
LweI	GCATC	2 cut(s)	305, 826
MaeI	CTAG	2 cut(s)	660, 782
MaeII	ACGT	2 cut(s)	684, 898
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	1 cut(s)	751
MboI	GATC	1 cut(s)	749
MboII	GAAGA	7 cut(s)	51, 94, 210, 507, 878, 975, 1077
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	6 cut(s)	144, 251, 282, 353, 665, 963
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	2 cut(s)	24, 936
MnlI	CCTC	9 cut(s)	152, 158, 230, 394, 420, 802, 848, 952, 1030
MroXI	GAANNNNTTC	2 cut(s)	373, 580
MseI	TTAA	7 cut(s)	87, 132, 258, 285, 303, 510, 951
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	127, 1080
MwoI	GCNNNNNNNGC	2 cut(s)	554, 890
NcoI	CCATGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	1071
NdeII	GATC	1 cut(s)	749
NlaIII	CATG	4 cut(s)	610, 617, 808, 1019
NlaIV	GGNNCC	4 cut(s)	370, 442, 457, 642
NmeAIII	GCCGAG	2 cut(s)	188, 1060
NspI	RCATGY	2 cut(s)	617, 1019
PciI	ACATGT	2 cut(s)	613, 1015
PdmI	GAANNNNTTC	2 cut(s)	373, 580
PinAI	ACCGGT	2 cut(s)	126, 1079
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PscI	ACATGT	2 cut(s)	613, 1015
PshBI	ATTAAT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	898
PspN4I	GGNNCC	4 cut(s)	370, 442, 457, 642
PspPI	GGNCC	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	740
RsaI	GTAC	4 cut(s)	138, 169, 442, 650
RsaNI	GTAC	4 cut(s)	137, 168, 441, 649
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	87, 132, 258, 285, 303, 510, 951
Sau3AI	GATC	1 cut(s)	749
Sau96I	GGNCC	1 cut(s)	640
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	9 cut(s)	93, 169, 687, 695, 859, 901, 934, 1011, 1041
SfaNI	GCATC	2 cut(s)	305, 826
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	6 cut(s)	144, 251, 282, 353, 665, 963
SsiI	CCGC	1 cut(s)	878
SspMI	CTAG	2 cut(s)	660, 782
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	54, 172, 580
TaiI	ACGT	2 cut(s)	687, 901
TaqI	TCGA	2 cut(s)	502, 993
TasI	AATT	6 cut(s)	144, 251, 282, 353, 665, 963
TatI	WGTACW	2 cut(s)	136, 648
Tru1I	TTAA	7 cut(s)	87, 132, 258, 285, 303, 510, 951
Tru9I	TTAA	7 cut(s)	87, 132, 258, 285, 303, 510, 951
TscAI	CASTG	1 cut(s)	1110
TspDTI	ATGAA	7 cut(s)	244, 366, 465, 863, 926, 950, 1077
TspGWI	ACGGA	3 cut(s)	381, 636, 1040
TspRI	CASTG	1 cut(s)	1110
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	3 cut(s)	144, 353, 963
XceI	RCATGY	2 cut(s)	617, 1019
XmnI	GAANNNNTTC	2 cut(s)	373, 580
XspI	CTAG	2 cut(s)	660, 782
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.