Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8911581 .. 8918614

Gene Structure 7034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG104900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGCTTGAAAATCCGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATCAGACGATCCTCTCCCAGCGATTGGAACAAAAATTTGGAAACGATACTTGAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCTGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACATGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCAATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACTGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGACGGTACCACATCAGGTGTCAAGAGACCATGTTCACTTTCAGATACATTCCGTTCAAAAACGGCTGACAGTGGACATGGGAATATACATGTGTCCAGAAAAGGCAAAAGTACAGTGCAAATCCAAACAAAGTTTACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAACATGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAAAGTTAGGGGTGGAAACGTGCATAAACATATGCATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAAGCAAGTGAATGGCAGTTTTCATAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCATGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCATGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACGGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCCAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

721

Amino Acids

81.52

Weight (kDa)

9.01

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	5 - 73	9e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	207 - 352	5.7e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1054
Acc65I	GGTACC	1 cut(s)	1160
AccB1I	GGYRCC	1 cut(s)	1160
AccB7I	CCANNNNNTGG	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	1058
AccII	CGCG	2 cut(s)	555, 933
AciI	CCGC	8 cut(s)	655, 901, 931, 933, 1389, 1455, 1521, 1587
AclWI	GGATC	5 cut(s)	339, 344, 429, 515, 1296
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	3 cut(s)	1137, 1347, 1701
AfaI	GTAC	7 cut(s)	163, 332, 766, 1000, 1162, 1267, 1753
AfiI	CCNNNNNNNGG	7 cut(s)	20, 360, 1356, 1422, 1488, 1554, 1763
AflII	CTTAAG	1 cut(s)	1913
AflIII	ACRYGT	2 cut(s)	1243, 1615
AhdI	GACNNNNNGTC	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	8 cut(s)	505, 974, 1320, 1700, 1904, 1963, 2080, 2131
AluI	AGCT	8 cut(s)	505, 974, 1320, 1700, 1904, 1963, 2080, 2131
Alw21I	GWGCWC	2 cut(s)	272, 705
Alw26I	GTCTC	3 cut(s)	75, 1121, 1174
AlwI	GGATC	5 cut(s)	339, 344, 429, 515, 1296
Ama87I	CYCGRG	2 cut(s)	456, 1019
AoxI	GGCC	1 cut(s)	928
ApeKI	GCWGC	7 cut(s)	638, 800, 914, 1085, 1837, 2041, 2080
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	1778, 1810
Asp718I	GGTACC	1 cut(s)	1160
AspS9I	GGNCC	1 cut(s)	1694
AsuC2I	CCSGG	1 cut(s)	1306
AsuHPI	GGTGA	3 cut(s)	387, 416, 802
AvaI	CYCGRG	2 cut(s)	456, 1019
AvaII	GGWCC	1 cut(s)	1694
BaeI	ACNNNNGTAYC	4 cut(s)	276, 309, 374, 407
BanI	GGYRCC	1 cut(s)	1160
BarI	GAAGNNNNNNTAC	2 cut(s)	1320, 1352
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	272, 705
BbvI	GCAGC	7 cut(s)	650, 787, 901, 1072, 1849, 2053, 2067
BccI	CCATC	5 cut(s)	209, 767, 920, 1685, 2149
BceAI	ACGGC	1 cut(s)	1233
BciVI	GTATCC	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	1306
BcoDI	GTCTC	3 cut(s)	75, 1121, 1174
BfaI	CTAG	3 cut(s)	405, 762, 1599
BfmI	CTRYAG	2 cut(s)	915, 2081
BfrI	CTTAAG	1 cut(s)	1913
BfuI	GTATCC	1 cut(s)	771
BglI	GCCNNNNNGGC	1 cut(s)	898
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	1306
Bme18I	GGWCC	1 cut(s)	1694
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmeT110I	CYCGRG	2 cut(s)	456, 1019
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	1694
BmiI	GGNNCC	3 cut(s)	1162, 1768, 1899
BmrFI	CCNGG	1 cut(s)	1306
BmsI	GCATC	7 cut(s)	505, 778, 820, 1340, 1914, 2077, 2099
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	2131, 2163
BpmI	CTGGAG	1 cut(s)	1884
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	1306
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	1174
BsaJI	CCNNGG	4 cut(s)	448, 783, 931, 1305
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 360, 1356, 1422, 1488, 1554, 1763
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	3 cut(s)	427, 1058, 1770
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	4 cut(s)	448, 783, 931, 1305
BseGI	GGATG	8 cut(s)	66, 490, 700, 793, 835, 2038, 2090, 2092
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	7 cut(s)	20, 360, 1356, 1422, 1488, 1554, 1763
BseNI	ACTGG	3 cut(s)	427, 1058, 1770
BseRI	GAGGAG	2 cut(s)	280, 643
BseXI	GCAGC	7 cut(s)	650, 787, 901, 1072, 1849, 2053, 2067
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	1071, 1856
Bsh1236I	CGCG	2 cut(s)	555, 933
BshFI	GGCC	1 cut(s)	930
BshNI	GGYRCC	1 cut(s)	1160
BsiHKAI	GWGCWC	2 cut(s)	272, 705
BsiHKCI	CYCGRG	2 cut(s)	456, 1019
BsiSI	CCGG	2 cut(s)	616, 1305
BslFI	GGGAC	3 cut(s)	718, 1169, 1616
BslI	CCNNNNNNNGG	7 cut(s)	20, 360, 1356, 1422, 1488, 1554, 1763
BsmAI	GTCTC	3 cut(s)	75, 1121, 1174
BsmFI	GGGAC	3 cut(s)	718, 1169, 1616
BsnI	GGCC	1 cut(s)	930
Bso31I	GGTCTC	1 cut(s)	1174
BsoBI	CYCGRG	2 cut(s)	456, 1019
Bsp1286I	GDGCHC	2 cut(s)	272, 705
Bsp1407I	TGTACA	1 cut(s)	1751
Bsp143I	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	8 cut(s)	655, 901, 931, 933, 1389, 1455, 1521, 1587
BspANI	GGCC	1 cut(s)	930
BspFNI	CGCG	2 cut(s)	555, 933
BspHI	TCATGA	2 cut(s)	976, 1858
BspLI	GGNNCC	3 cut(s)	1162, 1768, 1899
BspMAI	CTGCAG	2 cut(s)	919, 2085
BspPI	GGATC	5 cut(s)	339, 344, 429, 515, 1296
BspQI	GCTCTTC	1 cut(s)	1327
BspT107I	GGYRCC	1 cut(s)	1160
BspTI	CTTAAG	1 cut(s)	1913
BspTNI	GGTCTC	1 cut(s)	1174
BsrFI	RCCGGY	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	1751
BsrI	ACTGG	3 cut(s)	427, 1058, 1770
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	4 cut(s)	448, 783, 931, 1305
BssMI	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
BssT1I	CCWWGG	2 cut(s)	448, 783
Bst4CI	ACNGT	8 cut(s)	289, 498, 585, 808, 1160, 1226, 1270, 2012
Bst6I	CTCTTC	2 cut(s)	1327, 2052
BstAFI	CTTAAG	1 cut(s)	1913
BstAUI	TGTACA	1 cut(s)	1751
BstC8I	GCNNGC	4 cut(s)	1347, 1413, 1479, 1545
BstDEI	CTNAG	1 cut(s)	2151
BstDSI	CCRYGG	1 cut(s)	931
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	8 cut(s)	66, 490, 700, 793, 835, 2038, 2090, 2092
BstFNI	CGCG	2 cut(s)	555, 933
BstKTI	GATC	6 cut(s)	339, 347, 424, 523, 1304, 1986
BstMAI	GTCTC	3 cut(s)	75, 1121, 1174
BstMBI	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
BstMWI	GCNNNNNNNGC	2 cut(s)	797, 898
BstNSI	RCATGY	4 cut(s)	91, 1247, 1372, 1619
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	1304
BstSFI	CTRYAG	2 cut(s)	915, 2081
BstUI	CGCG	2 cut(s)	555, 933
BstV1I	GCAGC	7 cut(s)	650, 787, 901, 1072, 1849, 2053, 2067
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	1301
BstYI	RGATCY	1 cut(s)	1301
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	930
BtgI	CCRYGG	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	8 cut(s)	66, 490, 700, 793, 835, 2038, 2090, 2092
BtsIMutI	CAGTG	2 cut(s)	1231, 1275
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	4 cut(s)	1347, 1413, 1479, 1545
CciI	TCATGA	2 cut(s)	976, 1858
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	1694
Cfr42I	CCGCGG	1 cut(s)	934
Csp6I	GTAC	7 cut(s)	162, 331, 765, 999, 1161, 1266, 1752
CviQI	GTAC	7 cut(s)	162, 331, 765, 999, 1161, 1266, 1752
DdeI	CTNAG	1 cut(s)	2151
DpnI	GATC	6 cut(s)	338, 346, 423, 522, 1303, 1985
DpnII	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
DraI	TTTAAA	1 cut(s)	154
DrdI	GACNNNNNNGTC	1 cut(s)	1054
DriI	GACNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	1054
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	1327, 2052
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	2 cut(s)	1327, 2052
Eco130I	CCWWGG	2 cut(s)	448, 783
Eco31I	GGTCTC	1 cut(s)	1174
Eco47I	GGWCC	1 cut(s)	1694
Eco57I	CTGAAG	3 cut(s)	1137, 1347, 1701
Eco88I	CYCGRG	2 cut(s)	456, 1019
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	448, 783
EcoT22I	ATGCAT	4 cut(s)	1374, 1452, 1677, 2092
ErhI	CCWWGG	2 cut(s)	448, 783
FaqI	GGGAC	3 cut(s)	718, 1169, 1616
FauNDI	CATATG	1 cut(s)	1446
FblI	GTMKAC	1 cut(s)	1058
FokI	GGATG	8 cut(s)	73, 497, 707, 800, 842, 2045, 2077, 2099
FspBI	CTAG	3 cut(s)	405, 762, 1599
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	1884
HaeIII	GGCC	1 cut(s)	930
HapII	CCGG	2 cut(s)	616, 1305
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HpaII	CCGG	2 cut(s)	616, 1305
HphI	GGTGA	3 cut(s)	387, 416, 802
Hpy166II	GTNNAC	7 cut(s)	1059, 1108, 1190, 1229, 1290, 1752, 1754
Hpy188I	TCNGA	9 cut(s)	15, 341, 438, 542, 674, 1150, 1198, 1327, 1720
Hpy8I	GTNNAC	7 cut(s)	1059, 1108, 1190, 1229, 1290, 1752, 1754
Hpy99I	CGWCG	2 cut(s)	1095, 2049
HpyAV	CCTTC	8 cut(s)	485, 685, 820, 1096, 1416, 1482, 1548, 2113
HpyCH4III	ACNGT	8 cut(s)	289, 498, 585, 808, 1160, 1226, 1270, 2012
HpyCH4IV	ACGT	5 cut(s)	183, 1093, 1434, 1500, 1566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	797, 898
HpyF3I	CTNAG	1 cut(s)	2151
HpySE526I	ACGT	5 cut(s)	183, 1093, 1434, 1500, 1566
KpnI	GGTACC	1 cut(s)	1164
KspI	CCGCGG	1 cut(s)	934
Kzo9I	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
LguI	GCTCTTC	1 cut(s)	1327
LmnI	GCTCC	5 cut(s)	267, 320, 502, 1903, 2128
Lsp1109I	GCAGC	7 cut(s)	650, 787, 901, 1072, 1849, 2053, 2067
LweI	GCATC	7 cut(s)	505, 778, 820, 1340, 1914, 2077, 2099
MaeI	CTAG	3 cut(s)	405, 762, 1599
MaeII	ACGT	5 cut(s)	183, 1093, 1434, 1500, 1566
MaeIII	GTNAC	4 cut(s)	393, 742, 808, 1702
MalI	GATC	6 cut(s)	338, 346, 423, 522, 1303, 1985
MboI	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	1301
MhlI	GDGCHC	2 cut(s)	272, 705
MlyI	GAGTC	1 cut(s)	1011
MmeI	TCCRAC	1 cut(s)	480
Mph1103I	ATGCAT	4 cut(s)	1374, 1452, 1677, 2092
MseI	TTAA	4 cut(s)	153, 888, 1812, 1914
MslI	CAYNNNNRTG	2 cut(s)	846, 1449
MspA1I	CMGCKG	3 cut(s)	933, 1700, 1904
MspCI	CTTAAG	1 cut(s)	1913
MspI	CCGG	2 cut(s)	616, 1305
MspR9I	CCNGG	1 cut(s)	1306
MunI	CAATTG	1 cut(s)	129
MvnI	CGCG	2 cut(s)	555, 933
MwoI	GCNNNNNNNGC	2 cut(s)	797, 898
NciI	CCSGG	1 cut(s)	1306
NdeI	CATATG	1 cut(s)	1446
NdeII	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
NlaIV	GGNNCC	3 cut(s)	1162, 1768, 1899
NmuCI	GTSAC	4 cut(s)	393, 742, 808, 1702
NruI	TCGCGA	1 cut(s)	555
NsiI	ATGCAT	4 cut(s)	1374, 1452, 1677, 2092
NspI	RCATGY	4 cut(s)	91, 1247, 1372, 1619
PaeR7I	CTCGAG	2 cut(s)	456, 1019
PagI	TCATGA	2 cut(s)	976, 1858
PciI	ACATGT	2 cut(s)	1243, 1615
PciSI	GCTCTTC	1 cut(s)	1327
PfeI	GAWTC	9 cut(s)	64, 877, 1313, 1397, 1463, 1529, 1595, 1736, 1855
PflMI	CCANNNNNTGG	1 cut(s)	360
PleI	GAGTC	1 cut(s)	1011
PpsI	GAGTC	1 cut(s)	1011
PscI	ACATGT	2 cut(s)	1243, 1615
PspEI	GGTNACC	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	1162, 1768, 1899
PspPI	GGNCC	1 cut(s)	1694
PspXI	VCTCGAGB	2 cut(s)	456, 1019
PstI	CTGCAG	2 cut(s)	919, 2085
PsuI	RGATCY	1 cut(s)	1301
PvuII	CAGCTG	2 cut(s)	1700, 1904
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	7 cut(s)	163, 332, 766, 1000, 1162, 1267, 1753
RsaNI	GTAC	7 cut(s)	162, 331, 765, 999, 1161, 1266, 1752
RseI	CAYNNNNRTG	2 cut(s)	846, 1449
SacII	CCGCGG	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	1327
SaqAI	TTAA	4 cut(s)	153, 888, 1812, 1914
Sau3AI	GATC	6 cut(s)	336, 344, 421, 520, 1301, 1983
Sau96I	GGNCC	1 cut(s)	1694
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	1 cut(s)	1011
ScrFI	CCNGG	1 cut(s)	1306
SduI	GDGCHC	2 cut(s)	272, 705
SfaNI	GCATC	7 cut(s)	505, 778, 820, 1340, 1914, 2077, 2099
SfcI	CTRYAG	2 cut(s)	915, 2081
Sfr274I	CTCGAG	2 cut(s)	456, 1019
Sfr303I	CCGCGG	1 cut(s)	934
SgrBI	CCGCGG	1 cut(s)	934
SinI	GGWCC	1 cut(s)	1694
SlaI	CTCGAG	2 cut(s)	456, 1019
SmiMI	CAYNNNNRTG	2 cut(s)	846, 1449
SmlI	CTYRAG	4 cut(s)	386, 456, 1019, 1913
SmoI	CTYRAG	4 cut(s)	386, 456, 1019, 1913
SsiI	CCGC	8 cut(s)	655, 901, 931, 933, 1389, 1455, 1521, 1587
SspMI	CTAG	3 cut(s)	405, 762, 1599
StyD4I	CCNGG	1 cut(s)	1304
StyI	CCWWGG	2 cut(s)	448, 783
TaaI	ACNGT	8 cut(s)	289, 498, 585, 808, 1160, 1226, 1270, 2012
TaiI	ACGT	5 cut(s)	186, 1096, 1437, 1503, 1569
TaqI	TCGA	5 cut(s)	457, 666, 880, 1020, 1986
TatI	WGTACW	3 cut(s)	764, 1265, 1751
TauI	GCSGC	3 cut(s)	658, 904, 933
TfiI	GAWTC	9 cut(s)	64, 877, 1313, 1397, 1463, 1529, 1595, 1736, 1855
Tru1I	TTAA	4 cut(s)	153, 888, 1812, 1914
Tru9I	TTAA	4 cut(s)	153, 888, 1812, 1914
TscAI	CASTG	2 cut(s)	1231, 1275
TseFI	GTSAC	4 cut(s)	393, 742, 808, 1702
TseI	GCWGC	7 cut(s)	638, 800, 914, 1085, 1837, 2041, 2080
Tsp45I	GTSAC	4 cut(s)	393, 742, 808, 1702
TspDTI	ATGAA	8 cut(s)	77, 324, 455, 504, 573, 1643, 1875, 2070
TspGWI	ACGGA	3 cut(s)	36, 1196, 2045
TspRI	CASTG	2 cut(s)	1231, 1275
Van91I	CCANNNNNTGG	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	1913
VpaK11BI	GGWCC	1 cut(s)	1694
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	404
XceI	RCATGY	4 cut(s)	91, 1247, 1372, 1619
XhoI	CTCGAG	2 cut(s)	456, 1019
XmiI	GTMKAC	1 cut(s)	1058
XspI	CTAG	3 cut(s)	405, 762, 1599
ZrmI	AGTACT	1 cut(s)	766
Zsp2I	ATGCAT	4 cut(s)	1374, 1452, 1677, 2092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.