Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

78872800 .. 78874992

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG559800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGCCAGCATCAGCCATGGGGAAAAGTAACAACAACCCTCGTGCCTATGGTCGCCAAAGCTGCACCAAGCAGTTTTGGAAGGCTGGGGAATACGAAGGAGCTCCTCGCAACACCCGCAGACAAATGGATTCTTCTTCCACTAGTGGATTCGATCACGCCAGGATGCACCCCAAGTTTCTGCACTCCAATGCAACGAGTCACAAGTGGGCTCTTGGAGCTTTCGCGGAGCTTTTAGACAATGCACTGGACGAGGTGCACAGCGGTGCTACCTATGTCAATGTAGACGTGCTTGACAACAAGAAAGACGGAAGCAAAATGCTCCTGGTTGAAGACAATGGCGGTGGGATGGACCCGGAGAAGATGAGGAAGTGCATGTCATTGGGGTATTCAGAGAAAAGCAAGATGGCAGACACCATTGGACAGTACGGAAACGGTTTCAAAACAAGTACCATGAGGCTAGGGGCTGACGTCATCGTCTTCTCTCGTACTGACAGAACTCAGAGCATAGGGTTGTTGTCTTACACTTTCTTGAGGAGCACGGCAAAGGAGGATATTGTAGTTCCCATACTGGACTACGAGAGAAGACGAGTGAATGAAACTTGGGGTAAGATGTTCCGATCCTCGAGCGAAAACTGGGACAAAAGTTTGGAGACAATACTTGAGTGGTCGCCGTTTGAGAGTGAACGAGACTTGGATCATCAGTTTTATATGATGAAGCAGCACGGCACCCGAATAATCATATACAACCTTTGGGAGGACGATGAAGGAAACTTGGAGCTTGACTTGGACACTGAAGCTCATGATATTCAAATGCGAGGCGTGAACAGGGATGAGAAGAACATACAAATGGCTGAACAGTATCCAAACTCTCGTCATTTTTTGACCTACCGCCACTCGTTGAGGAGTTATGCAGCAATTCTCTACTTGCGGCTTCCCACTAACTTTCGAATCATTCTTCGCGGCAAGGATGTTGAGCATCACAACATTTTGAATGATTTGATGTGGTCCGAGCAGATTACGTATAGGCCTAAGCCTATCGAAAAGGAGGAGACATATATAGCGAAGAAAACCAAGAAGGAAAAGAAGGATACAAATATGGTTGCTGAGGTCACTCTTGGGTTTGTGAAAGATGCAAAAAACCATCTTGATGTTCAAGGGTTCAATGTATATCACAGGAATAGGCTGATCACGCCATTTTGGAGGGTGTGGAATGCTGCAGGAAGCGATGGCCGCGGTGTTATAGGTGTTATAGAAGCTGATTATATCAACCCAGCTCATGATAAGCAGGGGTTTGAGCATACCTTACTTCTTGACAGACTCAAGCAAAAGTTGGTAGAAACGCAAAAGGCATACTGGTCTACCAATTGTCATAAAATTGGCTATGCTCCACGCCGCAATGTCAGGGCTATTAATGAAGAGAGGGAAGCTGCTAAGTCAGGTAGCCAAAGACCAGTTTTAGATTCAAATCCAGACAAGTCCTCTTCACGCAAGACACCGGTTTTAGATTCAAATCCAGATGAGTCCCCTTCAAGCAAGAGACCAGTTTTAGATTCAAATCGAGACGAGGCCTCTTCACGAAAGAGACCAGTTTTAGATTCAAATCTAGACAAGTCCTCTTCACGCAAGAGATCACTTCCAGATTCGAATACAAATGAAGCCAAATCCCCCCCACACAAAAGTCAGAAAGTTTCTTCAGACAAATCTCCCAATGGGAATGCGGATATGCACAAGAAAAATACAGTGCAAACAACGACAAAGTCATCAACCCGTCGCCAAGAAATTGTTTTAGGATTAAGCGTTGTGGAGCAACCAAGGAATGTAGCTGCTGATGTGCAGACTGAAAGATGCAAGTCACGAAGAGAAAATGAGGAACTGATTCTCGCTGATGAGAAAGCACGAGGAGACAATGAGGAAAACAACTTGAAGGAAGAGTTGCGGAATGCATCCAATACCATTCGAGAATTGCGTACACAGCTGCAAAAGGCAAATGAAGAAATTAATAAGTTGAACATGCGGCAAGACGAGAGAGCACGACGAAACAAAGAAGAAAACAACTTACTGAAGGAAGAGTTGCGGGATAAATCCAATGAGCTGGAAAAGGCAAATGAAGAAATTAAGAAATTGAACATGCAGCAAGACGATCTGATTGACATGTTGGCTGAGAGCGAGATGAAGTTGCGGCACTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

730

Amino Acids

83.95

Weight (kDa)

8.69

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	72 - 186	1.3e-19	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	73 - 152	5.9e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	298 - 452	1.2e-54	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AatII	GACGTC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	725
AccI	GTMKAC	2 cut(s)	282, 1358
AccII	CGCG	3 cut(s)	224, 960, 1233
AclWI	GGATC	2 cut(s)	612, 702
AcoI	YGGCCR	1 cut(s)	1228
AcuI	CTGAAG	3 cut(s)	813, 1677, 2081
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	4 cut(s)	425, 448, 487, 1969
AfiI	CCNNNNNNNGG	1 cut(s)	754
AflIII	ACRYGT	1 cut(s)	2151
AgeI	ACCGGT	1 cut(s)	1495
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	158, 321
AleI	CACNNNNGTG	1 cut(s)	261
Alw21I	GWGCWC	4 cut(s)	103, 258, 539, 2032
Alw26I	GTCTC	7 cut(s)	644, 681, 1043, 1531, 1554, 1576, 1896
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	612, 702
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	1025, 1228, 1566
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	8 cut(s)	60, 718, 911, 1214, 1427, 1823, 1975, 2131
AseI	ATTAAT	2 cut(s)	1410, 1998
AsiGI	ACCGGT	1 cut(s)	1495
Asp700I	GAANNNNTTC	1 cut(s)	1875
AspS9I	GGNCC	2 cut(s)	349, 1005
AsuC2I	CCSGG	1 cut(s)	353
AsuII	TTCGAA	2 cut(s)	946, 1643
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	349, 1005
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	2 cut(s)	103, 211
BauI	CACGAG	2 cut(s)	39, 1896
BbsI	GAAGAC	3 cut(s)	336, 469, 589
Bbv12I	GWGCWC	4 cut(s)	103, 258, 539, 2032
BbvCI	CCTCAGC	1 cut(s)	1104
BbvI	GCAGC	8 cut(s)	47, 730, 923, 1201, 1414, 1810, 1962, 2143
BccI	CCATC	4 cut(s)	340, 397, 1149, 1220
BceAI	ACGGC	3 cut(s)	555, 655, 739
BciT130I	CCWGG	2 cut(s)	160, 323
BciVI	GTATCC	2 cut(s)	870, 1081
BclI	TGATCA	1 cut(s)	1185
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	7 cut(s)	644, 681, 1043, 1531, 1554, 1576, 1896
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	141, 458, 1604
BfmI	CTRYAG	1 cut(s)	1215
BfuI	GTATCC	2 cut(s)	870, 1081
Bme1390I	CCNGG	3 cut(s)	160, 323, 353
Bme18I	GGWCC	2 cut(s)	349, 1005
BmeT110I	CYCGRG	1 cut(s)	622
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	349, 1005
BmiI	GGNNCC	2 cut(s)	351, 727
BmrFI	CCNGG	3 cut(s)	160, 323, 353
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	6 cut(s)	17, 153, 985, 1120, 1835, 1952
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	3 cut(s)	336, 469, 589
Bpu10I	CCTNAGC	2 cut(s)	1029, 1104
Bpu14I	TTCGAA	2 cut(s)	946, 1643
BpuEI	CTTGAG	3 cut(s)	550, 680, 1304
BpuMI	CCSGG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	1020
BsaBI	GATNNNNATC	4 cut(s)	1464, 1509, 1554, 1599
BsaHI	GRCGYC	1 cut(s)	468
BsaI	GGTCTC	2 cut(s)	1531, 1576
BsaJI	CCNNGG	3 cut(s)	15, 1231, 1811
BsaWI	WCCGGW	1 cut(s)	1495
Bsc4I	CCNNNNNNNGG	1 cut(s)	754
Bse118I	RCCGGY	1 cut(s)	1495
Bse1I	ACTGG	7 cut(s)	249, 573, 638, 1358, 1451, 1541, 1586
Bse3DI	GCAATG	1 cut(s)	1402
Bse8I	GATNNNNATC	4 cut(s)	1464, 1509, 1554, 1599
BseBI	CCWGG	2 cut(s)	160, 323
BseDI	CCNNGG	3 cut(s)	15, 1231, 1811
BseGI	GGATG	5 cut(s)	168, 351, 835, 973, 1943
BseJI	GATNNNNATC	4 cut(s)	1464, 1509, 1554, 1599
BseLI	CCNNNNNNNGG	1 cut(s)	754
BseMI	GCAATG	1 cut(s)	1402
BseMII	CTCAG	3 cut(s)	512, 1095, 2151
BseNI	ACTGG	7 cut(s)	249, 573, 638, 1358, 1451, 1541, 1586
BseRI	GAGGAG	5 cut(s)	93, 547, 916, 1061, 1914
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	8 cut(s)	47, 730, 923, 1201, 1414, 1810, 1962, 2143
BseYI	CCCAGC	2 cut(s)	83, 1270
BsgI	GTGCAG	3 cut(s)	46, 164, 1853
Bsh1236I	CGCG	3 cut(s)	224, 960, 1233
BshFI	GGCC	3 cut(s)	1027, 1230, 1568
BshNI	GGYRCC	1 cut(s)	725
BshTI	ACCGGT	1 cut(s)	1495
BsiHKAI	GWGCWC	4 cut(s)	103, 258, 539, 2032
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	353, 1496
BslFI	GGGAC	2 cut(s)	650, 1507
BslI	CCNNNNNNNGG	1 cut(s)	754
BsmAI	GTCTC	7 cut(s)	644, 681, 1043, 1531, 1554, 1576, 1896
BsmBI	CGTCTC	1 cut(s)	1554
BsmFI	GGGAC	2 cut(s)	650, 1507
BsmI	GAATGC	3 cut(s)	1216, 1720, 1945
BsnI	GGCC	3 cut(s)	1027, 1230, 1568
Bso31I	GGTCTC	2 cut(s)	1531, 1576
BsoBI	CYCGRG	1 cut(s)	622
Bsp119I	TTCGAA	2 cut(s)	946, 1643
Bsp1286I	GDGCHC	5 cut(s)	103, 211, 258, 539, 2032
Bsp143I	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	3 cut(s)	1027, 1230, 1568
BspCNI	CTCAG	3 cut(s)	511, 1096, 2152
BspFNI	CGCG	3 cut(s)	224, 960, 1233
BspHI	TCATGA	2 cut(s)	799, 1276
BspLI	GGNNCC	2 cut(s)	351, 727
BspMAI	CTGCAG	1 cut(s)	1219
BspPI	GGATC	2 cut(s)	612, 702
BspT104I	TTCGAA	2 cut(s)	946, 1643
BspT107I	GGYRCC	1 cut(s)	725
BspTNI	GGTCTC	2 cut(s)	1531, 1576
BsrDI	GCAATG	1 cut(s)	1402
BsrFI	RCCGGY	1 cut(s)	1495
BsrI	ACTGG	7 cut(s)	249, 573, 638, 1358, 1451, 1541, 1586
BssAI	RCCGGY	1 cut(s)	1495
BssECI	CCNNGG	3 cut(s)	15, 1231, 1811
BssMI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	39, 1896
BssT1I	CCWWGG	2 cut(s)	15, 1811
Bst2BI	CACGAG	2 cut(s)	39, 1896
Bst2UI	CCWGG	2 cut(s)	160, 323
Bst4CI	ACNGT	4 cut(s)	423, 434, 858, 1741
Bst6I	CTCTTC	7 cut(s)	1410, 1486, 1576, 1621, 1852, 1923, 2061
BstACI	GRCGYC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	1020
BstBI	TTCGAA	2 cut(s)	946, 1643
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2160
BstDSI	CCRYGG	2 cut(s)	15, 1231
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	5 cut(s)	168, 351, 835, 973, 1943
BstFNI	CGCG	3 cut(s)	224, 960, 1233
BstKTI	GATC	6 cut(s)	154, 620, 697, 1188, 1631, 2143
BstMAI	GTCTC	7 cut(s)	644, 681, 1043, 1531, 1554, 1576, 1896
BstMBI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1972
BstNI	CCWGG	2 cut(s)	160, 323
BstNSI	RCATGY	4 cut(s)	376, 2014, 2131, 2155
BstSCI	CCNGG	3 cut(s)	158, 321, 351
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	258
BstSNI	TACGTA	1 cut(s)	1020
BstUI	CGCG	3 cut(s)	224, 960, 1233
BstV1I	GCAGC	8 cut(s)	47, 730, 923, 1201, 1414, 1810, 1962, 2143
BstV2I	GAAGAC	3 cut(s)	336, 469, 589
BstXI	CCANNNNNNTGG	1 cut(s)	2092
BsuI	GTATCC	2 cut(s)	870, 1081
BsuRI	GGCC	3 cut(s)	1027, 1230, 1568
BtgI	CCRYGG	2 cut(s)	15, 1231
BtgZI	GCGATG	1 cut(s)	1239
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	168, 351, 835, 973, 1943
BtsIMutI	CAGTG	3 cut(s)	242, 789, 1746
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	799, 1276
Cfr10I	RCCGGY	1 cut(s)	1495
Cfr13I	GGNCC	2 cut(s)	349, 1005
Cfr42I	CCGCGG	1 cut(s)	1234
Csp6I	GTAC	4 cut(s)	424, 447, 486, 1968
CspAI	ACCGGT	1 cut(s)	1495
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	8 cut(s)	16, 373, 451, 800, 1277, 2011, 2128, 2152
CviQI	GTAC	4 cut(s)	424, 447, 486, 1968
DdeI	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2160
DpnI	GATC	6 cut(s)	153, 619, 696, 1187, 1630, 2142
DpnII	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	1228
Eam1104I	CTCTTC	7 cut(s)	1410, 1486, 1576, 1621, 1852, 1923, 2061
EarI	CTCTTC	7 cut(s)	1410, 1486, 1576, 1621, 1852, 1923, 2061
Ecl136II	GAGCTC	1 cut(s)	101
Eco105I	TACGTA	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	15, 1811
Eco147I	AGGCCT	2 cut(s)	1027, 1568
Eco24I	GRGCYC	2 cut(s)	103, 211
Eco31I	GGTCTC	2 cut(s)	1531, 1576
Eco47I	GGWCC	2 cut(s)	349, 1005
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	3 cut(s)	813, 1677, 2081
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	158, 321
EcoT14I	CCWWGG	2 cut(s)	15, 1811
EcoT22I	ATGCAT	1 cut(s)	1945
EcoT38I	GRGCYC	2 cut(s)	103, 211
ErhI	CCWWGG	2 cut(s)	15, 1811
Esp3I	CGTCTC	1 cut(s)	1554
FaeI	CATG	8 cut(s)	19, 376, 454, 803, 1280, 2014, 2131, 2155
FaqI	GGGAC	2 cut(s)	650, 1507
FatI	CATG	8 cut(s)	15, 372, 450, 799, 1276, 2010, 2127, 2151
FauI	CCCGC	2 cut(s)	122, 2067
FbaI	TGATCA	1 cut(s)	1185
FblI	GTMKAC	2 cut(s)	282, 1358
FokI	GGATG	5 cut(s)	175, 358, 842, 980, 1930
FriOI	GRGCYC	2 cut(s)	103, 211
FspBI	CTAG	3 cut(s)	141, 458, 1604
GsaI	CCCAGC	2 cut(s)	87, 1274
HaeIII	GGCC	3 cut(s)	1027, 1230, 1568
HapII	CCGG	2 cut(s)	353, 1496
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	8 cut(s)	19, 376, 454, 803, 1280, 2014, 2131, 2155
HpaII	CCGG	2 cut(s)	353, 1496
Hpy166II	GTNNAC	6 cut(s)	256, 283, 683, 823, 1359, 1970
Hpy188I	TCNGA	7 cut(s)	391, 501, 617, 1009, 1683, 1696, 2145
Hpy8I	GTNNAC	6 cut(s)	256, 283, 683, 823, 1359, 1970
Hpy99I	CGWCG	2 cut(s)	1773, 2037
HpyAV	CCTTC	8 cut(s)	73, 89, 758, 1069, 1078, 1536, 1918, 2056
HpyCH4III	ACNGT	4 cut(s)	423, 434, 858, 1741
HpyCH4IV	ACGT	3 cut(s)	285, 468, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1972
HpyF3I	CTNAG	5 cut(s)	498, 1029, 1104, 1431, 2160
HpySE526I	ACGT	3 cut(s)	285, 468, 1019
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	8 cut(s)	19, 376, 454, 803, 1280, 2014, 2131, 2155
Ksp22I	TGATCA	1 cut(s)	1185
KspI	CCGCGG	1 cut(s)	1234
Kzo9I	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
LmnI	GCTCC	9 cut(s)	98, 106, 215, 226, 324, 534, 775, 1390, 1804
Lsp1109I	GCAGC	8 cut(s)	47, 730, 923, 1201, 1414, 1810, 1962, 2143
LweI	GCATC	6 cut(s)	17, 153, 985, 1120, 1835, 1952
MaeI	CTAG	3 cut(s)	141, 458, 1604
MaeII	ACGT	3 cut(s)	285, 468, 1019
MaeIII	GTNAC	4 cut(s)	26, 197, 1108, 1851
MalI	GATC	6 cut(s)	153, 619, 696, 1187, 1630, 2142
MboI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
MfeI	CAATTG	1 cut(s)	1363
MhlI	GDGCHC	5 cut(s)	103, 211, 258, 539, 2032
MluCI	AATT	8 cut(s)	915, 1363, 1374, 1779, 1961, 1995, 2112, 2120
MlyI	GAGTC	3 cut(s)	205, 1311, 1529
Mph1103I	ATGCAT	1 cut(s)	1945
MroXI	GAANNNNTTC	1 cut(s)	1875
MseI	TTAA	4 cut(s)	1410, 1793, 1998, 2115
MslI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
MspA1I	CMGCKG	3 cut(s)	261, 1233, 1975
MspI	CCGG	2 cut(s)	353, 1496
MspR9I	CCNGG	3 cut(s)	160, 323, 353
MunI	CAATTG	1 cut(s)	1363
Mva1269I	GAATGC	3 cut(s)	1216, 1720, 1945
MvaI	CCWGG	2 cut(s)	160, 323
MvnI	CGCG	3 cut(s)	224, 960, 1233
MwoI	GCNNNNNNNGC	6 cut(s)	60, 114, 215, 1189, 1230, 1972
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
NlaIII	CATG	8 cut(s)	19, 376, 454, 803, 1280, 2014, 2131, 2155
NlaIV	GGNNCC	2 cut(s)	351, 727
NmuCI	GTSAC	3 cut(s)	197, 1108, 1851
NsiI	ATGCAT	1 cut(s)	1945
NspI	RCATGY	4 cut(s)	376, 2014, 2131, 2155
NspV	TTCGAA	2 cut(s)	946, 1643
OliI	CACNNNNGTG	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	622
PagI	TCATGA	2 cut(s)	799, 1276
PceI	AGGCCT	2 cut(s)	1027, 1568
PciI	ACATGT	1 cut(s)	2151
PcsI	WCGNNNNNNNCGW	1 cut(s)	1963
PctI	GAATGC	3 cut(s)	1216, 1720, 1945
PdmI	GAANNNNTTC	1 cut(s)	1875
PfeI	GAWTC	9 cut(s)	128, 147, 948, 1460, 1505, 1550, 1595, 1640, 1876
PflFI	GACNNNGTC	1 cut(s)	1756
PinAI	ACCGGT	1 cut(s)	1495
PleI	GAGTC	3 cut(s)	204, 1311, 1528
PpsI	GAGTC	3 cut(s)	204, 1311, 1528
Ppu21I	YACGTR	1 cut(s)	1020
PscI	ACATGT	1 cut(s)	2151
PshBI	ATTAAT	2 cut(s)	1410, 1998
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	158, 321
PspFI	CCCAGC	2 cut(s)	83, 1270
PspGI	CCWGG	2 cut(s)	158, 321
PspN4I	GGNNCC	2 cut(s)	351, 727
PspPI	GGNCC	2 cut(s)	349, 1005
PspXI	VCTCGAGB	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	1219
PsyI	GACNNNGTC	1 cut(s)	1756
PvuII	CAGCTG	1 cut(s)	1975
RsaI	GTAC	4 cut(s)	425, 448, 487, 1969
RsaNI	GTAC	4 cut(s)	424, 447, 486, 1968
RseI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
SacI	GAGCTC	1 cut(s)	103
SacII	CCGCGG	1 cut(s)	1234
SaqAI	TTAA	4 cut(s)	1410, 1793, 1998, 2115
Sau3AI	GATC	6 cut(s)	151, 617, 694, 1185, 1628, 2140
Sau96I	GGNCC	2 cut(s)	349, 1005
SchI	GAGTC	3 cut(s)	205, 1311, 1529
ScrFI	CCNGG	3 cut(s)	160, 323, 353
SduI	GDGCHC	5 cut(s)	103, 211, 258, 539, 2032
SfaNI	GCATC	6 cut(s)	17, 153, 985, 1120, 1835, 1952
SfcI	CTRYAG	1 cut(s)	1215
Sfr274I	CTCGAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	1234
SfuI	TTCGAA	2 cut(s)	946, 1643
SgrBI	CCGCGG	1 cut(s)	1234
SinI	GGWCC	2 cut(s)	349, 1005
SlaI	CTCGAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	4 cut(s)	186, 261, 845, 1146
SmlI	CTYRAG	4 cut(s)	529, 622, 659, 1319
SmoI	CTYRAG	4 cut(s)	529, 622, 659, 1319
SnaBI	TACGTA	1 cut(s)	1020
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	8 cut(s)	915, 1363, 1374, 1779, 1961, 1995, 2112, 2120
SseBI	AGGCCT	2 cut(s)	1027, 1568
SspMI	CTAG	3 cut(s)	141, 458, 1604
SstI	GAGCTC	1 cut(s)	103
StuI	AGGCCT	2 cut(s)	1027, 1568
StyD4I	CCNGG	3 cut(s)	158, 321, 351
StyI	CCWWGG	2 cut(s)	15, 1811
TaaI	ACNGT	4 cut(s)	423, 434, 858, 1741
TaiI	ACGT	3 cut(s)	288, 471, 1022
TaqI	TCGA	7 cut(s)	150, 623, 946, 1038, 1558, 1643, 1957
TasI	AATT	8 cut(s)	915, 1363, 1374, 1779, 1961, 1995, 2112, 2120
TauI	GCSGC	6 cut(s)	931, 963, 1233, 1395, 2017, 2182
TfiI	GAWTC	9 cut(s)	128, 147, 948, 1460, 1505, 1550, 1595, 1640, 1876
Tru1I	TTAA	4 cut(s)	1410, 1793, 1998, 2115
Tru9I	TTAA	4 cut(s)	1410, 1793, 1998, 2115
TscAI	CASTG	3 cut(s)	249, 796, 1746
TseFI	GTSAC	3 cut(s)	197, 1108, 1851
TseI	GCWGC	8 cut(s)	60, 718, 911, 1214, 1427, 1823, 1975, 2131
Tsp45I	GTSAC	3 cut(s)	197, 1108, 1851
TspDTI	ATGAA	8 cut(s)	609, 728, 777, 1428, 1668, 2004, 2121, 2186
TspGWI	ACGGA	2 cut(s)	321, 441
TspRI	CASTG	3 cut(s)	249, 796, 1746
Tth111I	GACNNNGTC	1 cut(s)	1756
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	349, 1005
VspI	ATTAAT	2 cut(s)	1410, 1998
XagI	CCTNNNNNAGG	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	1603
XceI	RCATGY	4 cut(s)	376, 2014, 2131, 2155
XhoI	CTCGAG	1 cut(s)	622
XmiI	GTMKAC	2 cut(s)	282, 1358
XmnI	GAANNNNTTC	1 cut(s)	1875
XspI	CTAG	3 cut(s)	141, 458, 1604
ZraI	GACGTC	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	1945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.